Pregenerated sensors for PIGF (Homo sapiens)
Ensembl gene IDs: ENSG00000151665Ensembl transcript IDs: ENST00000306465.8, ENST00000420164.5, ENST00000474980.1, ENST00000482786.5, ENST00000495933.1
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TACCTCACAGTGCTTTACCTAGCATATCAGCTTTATCTTATTGTGATACAAGACTATCTGCTTCTGCCATaGTCTTTCCCAATCCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: YLTVLYLAYQLYLIVIQDYLLLP*SFPIQW Trigger: CCACTGGATTGGGAAAGACCATGGCAGAAGCAGATA...GTCTTGTATCACAATAAGATAAAGCTGATATGCTAGGTAAAGCACTGTGAGGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420164.5 |
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| CDS-3UTR GCA 90 bp | CACAGTGCTTTACCTAGCATATCAGCTTTATCTTATTGTGATACAAGACGAAAAAACACAGGCCGCTGCTaGAAAAATTACCTTGCTATC | + |
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Preference number: 4 (lower is better) Translates to: HSALPSISALSYCDTRRKNTGRC*KNYLAI Trigger: GATAGCAAGGTAATTTTTGCAGCAGCGGCCTGTGTT...TTTTCGTCTTGTATCACAATAAGATAAAGCTGATATGCTAGGTAAAGCACTGTG 39% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENST00000420164.5 |
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| CDS-3UTR GCA 90 bp | CACAGTGCTTTACCTAGCATATCAGCTTTATCTTATTGTGATACAAGACGAAAAGATAACACAGGCCGCTaGTGCAAAAATTACCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: HSALPSISALSYCDTRRKDNTGR*CKNYLA Trigger: AGCAAGGTAATTTTTGCAGCAGCGGCCTGTGTTATC...TTTTCGTCTTGTATCACAATAAGATAAAGCTGATATGCTAGGTAAAGCACTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000420164.5 |
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| CDS-3UTR CCA 90 bp | CACAGTGCTTTACCTAGCATATCAGCTTTATCTTATTGTGATACAAGACGAAAATCTTTCCCAATCCAGTaGAATAGGAAGTGCTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: HSALPSISALSYCDTRRKSFPIQ*NRKCSK Trigger: CTTGGAGCACTTCCTATTCCACTGGATTGGGAAAGA...TTTTCGTCTTGTATCACAATAAGATAAAGCTGATATGCTAGGTAAAGCACTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420164.5 |
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| CDS-3UTR GCA 90 bp | CACAGTGCTTTACCTAGCATATCAGCTTTATCTTATTGTGATACAAGACGAAAAAATTACCTTGCTATCTaGTTCTGCCATGGTCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: HSALPSISALSYCDTRRKNYLAI*FCHGLS Trigger: GGAAAGACCATGGCAGAAGCAGATAGCAAGGTAATT...TTTTCGTCTTGTATCACAATAAGATAAAGCTGATATGCTAGGTAAAGCACTGTG 38% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENST00000420164.5 |
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| CDS TCA 90 bp | AAGGGGGTCTGTCCATCAGGGCACGCCGGAAGAGTGGCGCTGAGCTaGCGGCGAGCGCCGGCGGGTCGGGGCGCCAAGGCTCAGGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: KGVCPSGHAGRVALS*RRAPAGRGAKAQGC Trigger: GCAGCCCTGAGCCTTGGCGCCCCGACCCGCCGGCGCTCGCCGTCAGCTCAGCGCCACTCTTCCGGCGTGCCCTGATGGACAGACCCCCTT 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000474980.1 ENST00000495933.1 |
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| CDS TCA 90 bp | TCCGAAAGGGGGTCTGTCCATCAGGGCACGCCGGAAGAGTGGCGCTaGGCTGACGGCGAGCGCCGGCGGGTCGGGGCGCCAAGGCTCAGG | + |
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Preference number: 5 (lower is better) Translates to: SERGSVHQGTPEEWR*ADGERRRVGAPRLR Trigger: CCTGAGCCTTGGCGCCCCGACCCGCCGGCGCTCGCCGTCAGCTCAGCGCCACTCTTCCGGCGTGCCCTGATGGACAGACCCCCTTTCGGA 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000474980.1 ENST00000495933.1 |
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| CDS GCA 90 bp | CACCTTCACCGGCAGCCCCACCCCAACCCGGGTCCCTCGGGATTCTaGCCGAGCCTACGCCGGCGCAAGCGTGGGCAGCGAGGAACCAGC | + |
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Preference number: 5 (lower is better) Translates to: HLHRQPHPNPGPSGF*PSLRRRKRGQRGTS Trigger: GCTGGTTCCTCGCTGCCCACGCTTGCGCCGGCGTAGGCTCGGGCAGAATCCCGAGGGACCCGGGTTGGGGTGGGGCTGCCGGTGAAGGTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000474980.1 ENST00000495933.1 |
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| CDS GCA 90 bp | CAGCACCGGTTAGGCCCTGGCGTGCCCCCAGGACGCCTGCAGAAGTaGCACGGGCATGACCCGGCCCACCTCGCTACGCACCGCAGCGGA | + |
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Preference number: 5 (lower is better) Translates to: QHRLGPGVPPGRLQK*HGHDPAHLATHRSG Trigger: TCCGCTGCGGTGCGTAGCGAGGTGGGCCGGGTCATGCCCGTGGCACTTCTGCAGGCGTCCTGGGGGCACGCCAGGGCCTAACCGGTGCTG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000495933.1 |
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| CDS TCA 90 bp | AGGCCCTGGCGTGCCCCCAGGACGCCTGCAGAAGTGCCACGGGCATaGCCCGGCCCACCTCGCTACGCACCGCAGCGGAGAGAAGGCTCT | + |
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Preference number: 5 (lower is better) Translates to: RPWRAPRTPAEVPRA*PGPPRYAPQRREGS Trigger: AGAGCCTTCTCTCCGCTGCGGTGCGTAGCGAGGTGGGCCGGGTCATGCCCGTGGCACTTCTGCAGGCGTCCTGGGGGCACGCCAGGGCCT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000495933.1 |
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| CDS CCA 90 bp | CCCGGGTCCCTCGGGATTCTGCCCGAGCCTACGCCGGCGCAAGCGTaGGCAGCGAGGAACCAGCTGAGAGGCAGGATCAAAGAGCATGGG | + |
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Preference number: 5 (lower is better) Translates to: PGSLGILPEPTPAQA*AARNQLRGRIKEHG Trigger: CCCATGCTCTTTGATCCTGCCTCTCAGCTGGTTCCTCGCTGCCCACGCTTGCGCCGGCGTAGGCTCGGGCAGAATCCCGAGGGACCCGGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000474980.1 ENST00000495933.1 |
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| CDS TCA 90 bp | GGCTCAGGGCTGCTTCGGCAATTCGCGGGGGTAGCTTGCACCTCGTaGGGCGAGACGCCGAGGGCGTCCAGCGGGGCTTACCTAACTCTC | + |
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Preference number: 5 (lower is better) Translates to: GSGLLRQFAGVACTS*GETPRASSGAYLTL Trigger: GAGAGTTAGGTAAGCCCCGCTGGACGCCCTCGGCGTCTCGCCTCACGAGGTGCAAGCTACCCCCGCGAATTGCCGAAGCAGCCCTGAGCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000474980.1 ENST00000495933.1 |
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| CDS TCA 90 bp | TGCCCGAGCCTACGCCGGCGCAAGCGTGGGCAGCGAGGAACCAGCTaGGAGGCAGGATCAAAGAGCATGGGAGTTGAAGACAAGGGAAAA | + |
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Preference number: 5 (lower is better) Translates to: CPSLRRRKRGQRGTS*EAGSKSMGVEDKGK Trigger: TTTTCCCTTGTCTTCAACTCCCATGCTCTTTGATCCTGCCTCTCAGCTGGTTCCTCGCTGCCCACGCTTGCGCCGGCGTAGGCTCGGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000474980.1 ENST00000495933.1 |
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| CDS TCA 90 bp | ATCAGGAATCCATTCTCTCAACAGATAGCCCTTCAGCGATTTTTCTaGGCCACCCTCGGAATCGCAGCTGCCAGCAGCAGATGTGGATGT | + |
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Preference number: 5 (lower is better) Translates to: IRNPFSQQIALQRFF*ATLGIAAASSRCGC Trigger: ACATCCACATCTGCTGCTGGCAGCTGCGATTCCGAGGGTGGCTCAGAAAAATCGCTGAAGGGCTATCTGTTGAGAGAATGGATTCCTGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000495933.1 |
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| CDS GCA 90 bp | TCACAGTACCAAGCCCCCTGCAGGGTACATGGAGAGATCTATAAGTaGTACGTTTTCTTTCTACTGTCATCTGCCATGGTCTTTCCCAAT | + |
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Preference number: 5 (lower is better) Translates to: SQYQAPCRVHGEIYK*YVFFLLSSAMVFPN Trigger: ATTGGGAAAGACCATGGCAGATGACAGTAGAAAGAAAACGTAGCACTTATAGATCTCTCCATGTACCCTGCAGGGGGCTTGGTACTGTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000306465.8 |
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| CDS CCA 90 bp | CCAAATGACACCAAGTGCACATTCCAATACTCAAATGGTGGCCAGTaGAATCAAGAGTTCAAAGAGCACCACACTAAACCAAGGGATCCC | + |
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Preference number: 5 (lower is better) Translates to: PNDTKCTFQYSNGGQ*NQEFKEHHTKPRDP Trigger: GGGATCCCTTGGTTTAGTGTGGTGCTCTTTGAACTCTTGATTCCACTGGCCACCATTTGAGTATTGGAATGTGCACTTGGTGTCATTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000495933.1 |
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| CDS TCA 90 bp | CAAGAAGGGACAAAGGGAAAGTTTCCCATAGATTCTATCTTAAGCTaGTTGAGGGAGGGCAAGGGGATCAGGAATCCATTCTCTCAACAG | + |
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Preference number: 5 (lower is better) Translates to: QEGTKGKFPIDSILS*LREGKGIRNPFSQQ Trigger: CTGTTGAGAGAATGGATTCCTGATCCCCTTGCCCTCCCTCAATCAGCTTAAGATAGAATCTATGGGAAACTTTCCCTTTGTCCCTTCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495933.1 |
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| CDS GCA 90 bp | TCACAGTACCAAGCCCCCTGCAGGGTACATGGAGAGATCTATAAGTaGTACGTTTTCTTTCTACTGTCATCTGAAATGTCAGACAGGATT | + |
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Preference number: 5 (lower is better) Translates to: SQYQAPCRVHGEIYK*YVFFLLSSEMSDRI Trigger: AATCCTGTCTGACATTTCAGATGACAGTAGAAAGAAAACGTAGCACTTATAGATCTCTCCATGTACCCTGCAGGGGGCTTGGTACTGTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000482786.5 |
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| CDS GCA 90 bp | ACGGTTGTCAGGATTAAGTTACTCATTTCACAGTACCAAGCCCCCTaGAGGGTACATGGAGAGATCTATAAGTGCTACGTTTTCTTTCTA | + |
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Preference number: 5 (lower is better) Translates to: TVVRIKLLISQYQAP*RVHGEIYKCYVFFL Trigger: TAGAAAGAAAACGTAGCACTTATAGATCTCTCCATGTACCCTGCAGGGGGCTTGGTACTGTGAAATGAGTAACTTAATCCTGACAACCGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000306465.8 ENST00000482786.5 |
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| CDS-3UTR CAA 90 bp | GCCATACCTCACAGTGCTTTACCTAGCATATCAGCTTTATCTTATTGTGATACAGCTGCAAAAATTACCTaGCTATCTGCTTCTGCCATG | + |
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Preference number: 5 (lower is better) Translates to: AIPHSALPSISALSYCDTAAKIT*LSASAM Trigger: CATGGCAGAAGCAGATAGCAAGGTAATTTTTGCAGC...TGTATCACAATAAGATAAAGCTGATATGCTAGGTAAAGCACTGTGAGGTATGGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000420164.5 |
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| CDS TCA 72 bp | GGGTCTGTCCATCAGGGCACGCCGGAAGAGTGGCGCTaGGCTGACGGCGAGCGCCGGCGGGTCGGGGCGCCA | + |
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Preference number: 6 (lower is better) Translates to: GSVHQGTPEEWR*ADGERRRVGAP Trigger: TGGCGCCCCGACCCGCCGGCGCTCGCCGTCAGCTCAGCGCCACTCTTCCGGCGTGCCCTGATGGACAGACCC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000474980.1 ENST00000495933.1 |
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| CDS GCA 72 bp | CGGCAGCCCCACCCCAACCCGGGTCCCTCGGGATTCTaGCCGAGCCTACGCCGGCGCAAGCGTGGGCAGCGA | + |
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Preference number: 6 (lower is better) Translates to: RQPHPNPGPSGF*PSLRRRKRGQR Trigger: TCGCTGCCCACGCTTGCGCCGGCGTAGGCTCGGGCAGAATCCCGAGGGACCCGGGTTGGGGTGGGGCTGCCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000474980.1 ENST00000495933.1 |
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| CDS TCA 72 bp | TGTCCATCAGGGCACGCCGGAAGAGTGGCGCTGAGCTaGCGGCGAGCGCCGGCGGGTCGGGGCGCCAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: CPSGHAGRVALS*RRAPAGRGAKA Trigger: AGCCTTGGCGCCCCGACCCGCCGGCGCTCGCCGTCAGCTCAGCGCCACTCTTCCGGCGTGCCCTGATGGACA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000474980.1 ENST00000495933.1 |
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| CDS TCA 72 bp | CGTGCCCCCAGGACGCCTGCAGAAGTGCCACGGGCATaGCCCGGCCCACCTCGCTACGCACCGCAGCGGAGA | + |
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Preference number: 6 (lower is better) Translates to: RAPRTPAEVPRA*PGPPRYAPQRR Trigger: TCTCCGCTGCGGTGCGTAGCGAGGTGGGCCGGGTCATGCCCGTGGCACTTCTGCAGGCGTCCTGGGGGCACG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000495933.1 |
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| CDS TCA 72 bp | CTGCTTCGGCAATTCGCGGGGGTAGCTTGCACCTCGTaGGGCGAGACGCCGAGGGCGTCCAGCGGGGCTTAC | + |
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Preference number: 6 (lower is better) Translates to: LLRQFAGVACTS*GETPRASSGAY Trigger: GTAAGCCCCGCTGGACGCCCTCGGCGTCTCGCCTCACGAGGTGCAAGCTACCCCCGCGAATTGCCGAAGCAG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000474980.1 ENST00000495933.1 |
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| CDS CAA 72 bp | AGGCTCAGGGCTGCTTCGGCAATTCGCGGGGGTAGCTaGCACCTCGTGAGGCGAGACGCCGAGGGCGTCCAG | + |
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Preference number: 6 (lower is better) Translates to: RLRAASAIRGGS*HLVRRDAEGVQ Trigger: CTGGACGCCCTCGGCGTCTCGCCTCACGAGGTGCAAGCTACCCCCGCGAATTGCCGAAGCAGCCCTGAGCCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000474980.1 ENST00000495933.1 |
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| CDS CCA 72 bp | CTCGGGATTCTGCCCGAGCCTACGCCGGCGCAAGCGTaGGCAGCGAGGAACCAGCTGAGAGGCAGGATCAAA | + |
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Preference number: 6 (lower is better) Translates to: LGILPEPTPAQA*AARNQLRGRIK Trigger: TTTGATCCTGCCTCTCAGCTGGTTCCTCGCTGCCCACGCTTGCGCCGGCGTAGGCTCGGGCAGAATCCCGAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000474980.1 ENST00000495933.1 |
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| CDS TCA 72 bp | CCATTCTCTCAACAGATAGCCCTTCAGCGATTTTTCTaGGCCACCCTCGGAATCGCAGCTGCCAGCAGCAGA | + |
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Preference number: 6 (lower is better) Translates to: PFSQQIALQRFF*ATLGIAAASSR Trigger: TCTGCTGCTGGCAGCTGCGATTCCGAGGGTGGCTCAGAAAAATCGCTGAAGGGCTATCTGTTGAGAGAATGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000495933.1 |
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| CDS CCA 72 bp | AGCGAGGAACCAGCTGAGAGGCAGGATCAAAGAGCATaGGAGTTGAAGACAAGGGAAAACTGGGGGACAGAG | + |
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Preference number: 6 (lower is better) Translates to: SEEPAERQDQRA*ELKTRENWGTE Trigger: CTCTGTCCCCCAGTTTTCCCTTGTCTTCAACTCCCATGCTCTTTGATCCTGCCTCTCAGCTGGTTCCTCGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000474980.1 ENST00000495933.1 |
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| CDS CAA 72 bp | GAACCAGCTGAGAGGCAGGATCAAAGAGCATGGGAGTaGAAGACAAGGGAAAACTGGGGGACAGAGGCGAAA | + |
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Preference number: 6 (lower is better) Translates to: EPAERQDQRAWE*KTRENWGTEAK Trigger: TTTCGCCTCTGTCCCCCAGTTTTCCCTTGTCTTCAACTCCCATGCTCTTTGATCCTGCCTCTCAGCTGGTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000474980.1 ENST00000495933.1 |
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| CDS TCA 72 bp | AACCAGCTGAGAGGCAGGATCAAAGAGCATGGGAGTTaGAGACAAGGGAAAACTGGGGGACAGAGGCGAAAA | + |
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Preference number: 6 (lower is better) Translates to: NQLRGRIKEHGS*RQGKTGGQRRK Trigger: TTTTCGCCTCTGTCCCCCAGTTTTCCCTTGTCTTCAACTCCCATGCTCTTTGATCCTGCCTCTCAGCTGGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000474980.1 ENST00000495933.1 |
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| CDS CCA 72 bp | ATTTTACTGATAAGGAAACACGGCAAACAGGTGAGGTaGTCCAAGGTCCCATGCGCTACAGCCATCTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: ILLIRKHGKQVR*SKVPCATAISL Trigger: CAGAGAGATGGCTGTAGCGCATGGGACCTTGGACCACCTCACCTGTTTGCCGTGTTTCCTTATCAGTAAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495933.1 |
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| CDS GCA 72 bp | CAAGCCCCCTGCAGGGTACATGGAGAGATCTATAAGTaGTACGTTTTCTTTCTACTGTCATCTGCCATGGTC | + |
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Preference number: 6 (lower is better) Translates to: QAPCRVHGEIYK*YVFFLLSSAMV Trigger: GACCATGGCAGATGACAGTAGAAAGAAAACGTAGCACTTATAGATCTCTCCATGTACCCTGCAGGGGGCTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000306465.8 |
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| CDS TCA 72 bp | TCGCAGCTGCCAGCAGCAGATGTGGATGTAATACAGTaGGCAGGACCCAAACTCAAATGTTTGCTGAATGAA | + |
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Preference number: 6 (lower is better) Translates to: SQLPAADVDVIQ*AGPKLKCLLNE Trigger: TTCATTCAGCAAACATTTGAGTTTGGGTCCTGCTCACTGTATTACATCCACATCTGCTGCTGGCAGCTGCGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000495933.1 |
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| CDS TCA 72 bp | ACAAAGGGAAAGTTTCCCATAGATTCTATCTTAAGCTaGTTGAGGGAGGGCAAGGGGATCAGGAATCCATTC | + |
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Preference number: 6 (lower is better) Translates to: TKGKFPIDSILS*LREGKGIRNPF Trigger: GAATGGATTCCTGATCCCCTTGCCCTCCCTCAATCAGCTTAAGATAGAATCTATGGGAAACTTTCCCTTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495933.1 |
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| CDS GCA 72 bp | AGGATTAAGTTACTCATTTCACAGTACCAAGCCCCCTaGAGGGTACATGGAGAGATCTATAAGTGCTACGTT | + |
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Preference number: 6 (lower is better) Translates to: RIKLLISQYQAP*RVHGEIYKCYV Trigger: AACGTAGCACTTATAGATCTCTCCATGTACCCTGCAGGGGGCTTGGTACTGTGAAATGAGTAACTTAATCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000306465.8 ENST00000482786.5 |
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| CDS CCA 72 bp | ACCAAGTGCACATTCCAATACTCAAATGGTGGCCAGTaGAATCAAGAGTTCAAAGAGCACCACACTAAACCA | + |
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Preference number: 6 (lower is better) Translates to: TKCTFQYSNGGQ*NQEFKEHHTKP Trigger: TGGTTTAGTGTGGTGCTCTTTGAACTCTTGATTCCACTGGCCACCATTTGAGTATTGGAATGTGCACTTGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000495933.1 |
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| CDS CAA 90 bp | GTCAAGGAAGGCCATGTTGGAAACAAGCATTACCACAGGCTTATATaGCAATTTCTGAAAATCCCACTAAGTGGCTTTCAGAAATGCAAA | + |
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Preference number: 6 (lower is better) Translates to: VKEGHVGNKHYHRLI*QFLKIPLSGFQKCK Trigger: TTTGCATTTCTGAAAGCCACTTAGTGGGATTTTCAGAAATTGCAATATAAGCCTGTGGTAATGCTTGTTTCCAACATGGCCTTCCTTGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495933.1 |
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| CDS TCA 72 bp | AAACCAAGGGATCCCAATGCTTCAGAAATACCAAGATaGCAACGTCTGTTACAGGTGTTAAATTCCAACCAA | + |
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Preference number: 6 (lower is better) Translates to: KPRDPNASEIPR*QRLLQVLNSNQ Trigger: TTGGTTGGAATTTAACACCTGTAACAGACGTTGTCATCTTGGTATTTCTGAAGCATTGGGATCCCTTGGTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000495933.1 |
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