Pregenerated sensors for PGA4 (Homo sapiens)
Ensembl gene IDs: ENSG00000229183Ensembl transcript IDs: ENST00000537932.5, ENST00000544899.1, ENST00000624544.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 72 bp | AGGCCACCTGCCCAAGGTCATACAGCGGGGGAGTGGTaGAACTACGTTTGGAAGAACACAGGCCTTTTAGGT | + |
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Preference number: 6 (lower is better) Translates to: RPPAQGHTAGEW*NYVWKNTGLLG Trigger: ACCTAAAAGGCCTGTGTTCTTCCAAACGTAGTTCCACCACTCCCCCGCTGTATGACCTTGGGCAGGTGGCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000537932.5 ENST00000624544.1 |
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| CDS CCA 72 bp | GTGAGGCCACCTGCCCAAGGTCATACAGCGGGGGAGTaGTGGAACTACGTTTGGAAGAACACAGGCCTTTTA | + |
|
Preference number: 6 (lower is better) Translates to: VRPPAQGHTAGE*WNYVWKNTGLL Trigger: TAAAAGGCCTGTGTTCTTCCAAACGTAGTTCCACCACTCCCCCGCTGTATGACCTTGGGCAGGTGGCCTCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000537932.5 ENST00000624544.1 |
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| CDS CCA 72 bp | TCACAGTTCCAGGCTGCAGGGAGCTCCCTGCCTAGCTaGCAAGATAAGTTATGTTGGCAGAAGGGCAAGATG | + |
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Preference number: 6 (lower is better) Translates to: SQFQAAGSSLPS*QDKLCWQKGKM Trigger: CATCTTGCCCTTCTGCCAACATAACTTATCTTGCCAGCTAGGCAGGGAGCTCCCTGCAGCCTGGAACTGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000544899.1 ENST00000624544.1 |
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| CDS CAA 90 bp | TGGGCTGGTCCCAGTTTTAGTACTGAAAGTCTCTGTCCTGGGAAATaGTTCATTCTTGGGAAAACCCACACCACTGAGCACGCTAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: WAGPSFSTESLCPGK*FILGKTHTTEHASR Trigger: CCTGCTAGCGTGCTCAGTGGTGTGGGTTTTCCCAAGAATGAACAATTTCCCAGGACAGAGACTTTCAGTACTAAAACTGGGACCAGCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000624544.1 |
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| CDS CAA 72 bp | GTACTGAAAGTCTCTGTCCTGGGAAATTGTTCATTCTaGGGAAAACCCACACCACTGAGCACGCTAGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: VLKVSVLGNCSF*GKPTPLSTLAG Trigger: GCCTGCTAGCGTGCTCAGTGGTGTGGGTTTTCCCAAGAATGAACAATTTCCCAGGACAGAGACTTTCAGTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000624544.1 |
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| CDS TCA 72 bp | GCTGGCAAGATAAGTTATGTTGGCAGAAGGGCAAGATaGTCAGTCAGGCATGAGGCAGGGAACAAAAACAGG | + |
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Preference number: 6 (lower is better) Translates to: AGKISYVGRRAR*SVRHEAGNKNR Trigger: CCTGTTTTTGTTCCCTGCCTCATGCCTGACTGATCATCTTGCCCTTCTGCCAACATAACTTATCTTGCCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000624544.1 |
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| CDS CAA 90 bp | TGTAGCTTGCTCAGAATCAATGGGCTAGTAATTCAGACCCAGGACTaGGACCCAGGGGTCCAAATAGAATCCTCTTTTCACTCCATTAAC | + |
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Preference number: 6 (lower is better) Translates to: CSLLRINGLVIQTQD*DPGVQIESSFHSIN Trigger: GTTAATGGAGTGAAAAGAGGATTCTATTTGGACCCCTGGGTCCAAGTCCTGGGTCTGAATTACTAGCCCATTGATTCTGAGCAAGCTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000624544.1 |
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| CDS CAA 90 bp | CTCTACTTTTTGGATGAGAAAACTGAGGGTGAGATGAGCTGTAGCTaGCTCAGAATCAATGGGCTAGTAATTCAGACCCAGGACTTGGAC | + |
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Preference number: 6 (lower is better) Translates to: LYFLDEKTEGEMSCS*LRINGLVIQTQDLD Trigger: GTCCAAGTCCTGGGTCTGAATTACTAGCCCATTGATTCTGAGCAAGCTACAGCTCATCTCACCCTCAGTTTTCTCATCCAAAAAGTAGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000624544.1 |
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| CDS CAA 72 bp | CCCAGTTTTAGTACTGAAAGTCTCTGTCCTGGGAAATaGTTCATTCTTGGGAAAACCCACACCACTGAGCAC | + |
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Preference number: 6 (lower is better) Translates to: PSFSTESLCPGK*FILGKTHTTEH Trigger: GTGCTCAGTGGTGTGGGTTTTCCCAAGAATGAACAATTTCCCAGGACAGAGACTTTCAGTACTAAAACTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000624544.1 |
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| CDS CAA 72 bp | TTGGATGAGAAAACTGAGGGTGAGATGAGCTGTAGCTaGCTCAGAATCAATGGGCTAGTAATTCAGACCCAG | + |
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Preference number: 6 (lower is better) Translates to: LDEKTEGEMSCS*LRINGLVIQTQ Trigger: CTGGGTCTGAATTACTAGCCCATTGATTCTGAGCAAGCTACAGCTCATCTCACCCTCAGTTTTCTCATCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000624544.1 |
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