Pregenerated sensors for PFDN5 (Homo sapiens)
Ensembl gene IDs: ENSG00000123349Ensembl transcript IDs: ENST00000243040.10, ENST00000547130.6, ENST00000547228.1, ENST00000548984.1, ENST00000549995.1, ENST00000550069.2, ENST00000550513.1, ENST00000550846.5, ENST00000550880.5, ENST00000550964.6, ENST00000551018.5, ENST00000551223.5, ENST00000552341.5, ENST00000552548.6, ENST00000552742.6, ENST00000553171.2, ENST00000676468.1, ENST00000677184.1, ENST00000677199.1, ENST00000677326.1, ENST00000677712.1, ENST00000678256.1, ENST00000678284.1
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | GACGGCCTGTTTCATGGCGTGCTTCTCCTGAAGAGCTGGTTGGATTTTCTCCATCTCTTGAAGAAGTCCTaGGCATCCTCAGCTGTCTTC | + |
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Preference number: 3 (lower is better) Translates to: DGLFHGVLLLKSWLDFLHLLKKS*ASSAVF Trigger: GAAGACAGCTGAGGATGCCAAGGACTTCTTCAAGAG...ATGGAGAAAATCCAACCAGCTCTTCAGGAGAAGCACGCCATGAAACAGGCCGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000243040.10 ENST00000550880.5 ENST00000676468.1 |
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| CDS-3UTR CCA 90 bp | GCAGCTTCCCAGGGACATACATCTAAAGTCCCAGCTACTCGGGAGACTGAGGCACATTGCGCTCCAGCCTaGGCGACAGAGCGAAATTCC | + |
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Preference number: 4 (lower is better) Translates to: AASQGHTSKVPATRETEAHCAPA*ATERNS Trigger: GGAATTTCGCTCTGTCGCCCAGGCTGGAGCGCAATG...TGCCTCAGTCTCCCGAGTAGCTGGGACTTTAGATGTATGTCCCTGGGAAGCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000550880.5 |
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| CDS-3UTR GCA 90 bp | GCAGCTTCCCAGGGACATACATCTAAAGTCCCAGCTACTCGGGAGACTGAGGCATCGGGAGGCGGAGGTTaGAGTAAGCCAAGATCTCAC | + |
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Preference number: 4 (lower is better) Translates to: AASQGHTSKVPATRETEASGGGG*SKPRSH Trigger: GTGAGATCTTGGCTTACTGCAACCTCCGCCTCCCGA...TGCCTCAGTCTCCCGAGTAGCTGGGACTTTAGATGTATGTCCCTGGGAAGCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000550880.5 |
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| CDS-3UTR GCA 90 bp | ATGCAGCTTCCCAGGGACATACATCTAAAGTCCCAGCTACTCGGGAGACTGAGGGTGATGTTAATAGACTaGGCCATGTTGGGAAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: MQLPRDIHLKSQLLGRLRVMLID*AMLGRP Trigger: CGGCCTTCCCAACATGGCGCAGTCTATTAACATCAC...CCTCAGTCTCCCGAGTAGCTGGGACTTTAGATGTATGTCCCTGGGAAGCTGCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000550880.5 |
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| CDS-3UTR CCA 90 bp | GACGGCCTGTTTCATGGCGTGCTTCTCCTGAAGAGCTGGTTGGATTTTCTCCATGAGCGAAATTCCGTCTaGTCCAGCTGGTTCTTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: DGLFHGVLLLKSWLDFLHERNSV*SSWFLS Trigger: GCTCAAGAACCAGCTGGACCAGACGGAATTTCGCTC...ATGGAGAAAATCCAACCAGCTCTTCAGGAGAAGCACGCCATGAAACAGGCCGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000550880.5 |
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| CDS-3UTR GCA 90 bp | GACGGCCTGTTTCATGGCGTGCTTCTCCTGAAGAGCTGGTTGGATTTTCTCCATGTGATGTTAATAGACTaGGCCATGTTGGGAAGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: DGLFHGVLLLKSWLDFLHVMLID*AMLGRP Trigger: CGGCCTTCCCAACATGGCGCAGTCTATTAACATCAC...ATGGAGAAAATCCAACCAGCTCTTCAGGAGAAGCACGCCATGAAACAGGCCGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000243040.10 ENST00000550880.5 ENST00000676468.1 |
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| CDS-3UTR GCA 90 bp | ATGCAGCTTCCCAGGGACATACATCTAAAGTCCCAGCTACTCGGGAGACTGAGGCCTCTGCCCCATTTCTaGAAAAACTCTCAGGCCTTA | + |
|
Preference number: 4 (lower is better) Translates to: MQLPRDIHLKSQLLGRLRPLPHF*KNSQAL Trigger: TAAGGCCTGAGAGTTTTTGCAGAAATGGGGCAGAGG...CCTCAGTCTCCCGAGTAGCTGGGACTTTAGATGTATGTCCCTGGGAAGCTGCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000550880.5 |
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| CDS-3UTR GCA 90 bp | GACGGCCTGTTTCATGGCGTGCTTCTCCTGAAGAGCTGGTTGGATTTTCTCCATCCTCTGCCCCATTTCTaGAAAAACTCTCAGGCCTTA | + |
|
Preference number: 4 (lower is better) Translates to: DGLFHGVLLLKSWLDFLHPLPHF*KNSQAL Trigger: TAAGGCCTGAGAGTTTTTGCAGAAATGGGGCAGAGG...ATGGAGAAAATCCAACCAGCTCTTCAGGAGAAGCACGCCATGAAACAGGCCGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENST00000243040.10 ENST00000550880.5 ENST00000676468.1 |
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| CDS-3UTR GCA 90 bp | GACGGCCTGTTTCATGGCGTGCTTCTCCTGAAGAGCTGGTTGGATTTTCTCCATGACAAACACCCTCGTTaGTCTTGTTCAGCACGTTCA | + |
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Preference number: 4 (lower is better) Translates to: DGLFHGVLLLKSWLDFLHDKHPR*SCSARS Trigger: TGAACGTGCTGAACAAGAGCAACGAGGGTGTTTGTC...ATGGAGAAAATCCAACCAGCTCTTCAGGAGAAGCACGCCATGAAACAGGCCGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000676468.1 |
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| CDS-3UTR GCA 90 bp | GACGGCCTGTTTCATGGCGTGCTTCTCCTGAAGAGCTGGTTGGATTTTCTCCATGACATACATCCTCGTTaGTCTTGTTCAGCACGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: DGLFHGVLLLKSWLDFLHDIHPR*SCSARS Trigger: TGAACGTGCTGAACAAGAGCAACGAGGATGTATGTC...ATGGAGAAAATCCAACCAGCTCTTCAGGAGAAGCACGCCATGAAACAGGCCGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000243040.10 |
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| CDS-3UTR CCA 90 bp | ATGCAGCTTCCCAGGGACATACATCTAAAGTCCCAGCTACTCGGGAGACTGAGGTTTTCTCCATCTGCTTaGTTAGAAAATCTATCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: MQLPRDIHLKSQLLGRLRFSPSA*LENLSS Trigger: GGAAGATAGATTTTCTAACCAAGCAGATGGAGAAAA...CCTCAGTCTCCCGAGTAGCTGGGACTTTAGATGTATGTCCCTGGGAAGCTGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000550880.5 |
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| CDS-3UTR CCA 90 bp | GACGGCCTGTTTCATGGCGTGCTTCTCCTGAAGAGCTGGTTGGATTTTCTCCATTTTTCTCCATCTGCTTaGTTAGAAAATCTATCTTCC | + |
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Preference number: 4 (lower is better) Translates to: DGLFHGVLLLKSWLDFLHFSPSA*LENLSS Trigger: GGAAGATAGATTTTCTAACCAAGCAGATGGAGAAAA...ATGGAGAAAATCCAACCAGCTCTTCAGGAGAAGCACGCCATGAAACAGGCCGTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENST00000243040.10 ENST00000550880.5 ENST00000676468.1 |
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| CDS TCA 90 bp | GCGTCTCGGTGGCGCCGGGAGGCCTCGCTGCGCCAGACAGCTCTATaGTCCTCCGTCCCGGAAGGGAAGGAGGGGCTTGAGCCTCTCAGA | + |
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Preference number: 5 (lower is better) Translates to: ASRWRREASLRQTAL*SSVPEGKEGLEPLR Trigger: TCTGAGAGGCTCAAGCCCCTCCTTCCCTTCCGGGACGGAGGATCATAGAGCTGTCTGGCGCAGCGAGGCCTCCCGGCGCCACCGAGACGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000551018.5 |
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| CDS CCA 90 bp | TGGGATCGGATAGAGGTTTCGCCTGGGAAAGGTAGGCTGCCAACTTaGAACCGGGCGCGAGAAGTACGCGTGGGCAAGGGGGATGTAGAG | + |
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Preference number: 5 (lower is better) Translates to: WDRIEVSPGKGRLPT*NRAREVRVGKGDVE Trigger: CTCTACATCCCCCTTGCCCACGCGTACTTCTCGCGCCCGGTTCCAAGTTGGCAGCCTACCTTTCCCAGGCGAAACCTCTATCCGATCCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000550513.1 |
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| CDS CCA 90 bp | GGCGGAGGTTGCAGTAAGCCAAGATCTCACCATTGCGCTCCAGCCTaGGCGACAGAGCGAAATTCCGTCTGGTCCAGCTGGTTCTTGAGC | + |
|
Preference number: 5 (lower is better) Translates to: GGGCSKPRSHHCAPA*ATERNSVWSSWFLS Trigger: GCTCAAGAACCAGCTGGACCAGACGGAATTTCGCTCTGTCGCCCAGGCTGGAGCGCAATGGTGAGATCTTGGCTTACTGCAACCTCCGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000550880.5 |
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| CDS CCA 90 bp | GGCGGAGGTTGCAGTAAGCCAAGATCTCACCATTGCGCTCCAGCCTaGGCGACAGAGCGAAATTCCGTCCTCGTTGCTCTTGTTCAGCAC | + |
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Preference number: 5 (lower is better) Translates to: GGGCSKPRSHHCAPA*ATERNSVLVALVQH Trigger: GTGCTGAACAAGAGCAACGAGGACGGAATTTCGCTCTGTCGCCCAGGCTGGAGCGCAATGGTGAGATCTTGGCTTACTGCAACCTCCGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000551223.5 ENST00000552341.5 ENST00000553171.2 |
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| CDS-3UTR CAA 90 bp | ATGCAGCTTCCCAGGGACATACATCTAAAGTCCCAGCTACTCGGGAGACTGAGGGCCAAGATCTCACCATaGCGCTCCAGCCTGGGCGAC | + |
|
Preference number: 5 (lower is better) Translates to: MQLPRDIHLKSQLLGRLRAKISP*RSSLGD Trigger: GTCGCCCAGGCTGGAGCGCAATGGTGAGATCTTGGC...CCTCAGTCTCCCGAGTAGCTGGGACTTTAGATGTATGTCCCTGGGAAGCTGCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000550880.5 |
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| CDS-3UTR CAA 90 bp | GCAGCTTCCCAGGGACATACATCTAAAGTCCCAGCTACTCGGGAGACTGAGGCAAGGCAGAAGAATCTCTaGAACTCGGGAGGCGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: AASQGHTSKVPATRETEARQKNL*NSGGGG Trigger: ACCTCCGCCTCCCGAGTTCAAGAGATTCTTCTGCCT...TGCCTCAGTCTCCCGAGTAGCTGGGACTTTAGATGTATGTCCCTGGGAAGCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000550880.5 |
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| CDS TCA 90 bp | ACATCTGAGAAGCAAGAATTAAGGGAAAAACTAGCCAGCCCAGCATaGGCCATGATTCCGCCAGCCAGCCTGCTTGGCCTCCAAAGACCC | + |
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Preference number: 5 (lower is better) Translates to: TSEKQELREKLASPA*AMIPPASLLGLQRP Trigger: GGGTCTTTGGAGGCCAAGCAGGCTGGCTGGCGGAATCATGGCTCATGCTGGGCTGGCTAGTTTTTCCCTTAATTCTTGCTTCTCAGATGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000550513.1 ENST00000550964.6 ENST00000552341.5 ENST00000677184.1 ENST00000677712.1 ENST00000678256.1 |
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| CDS-3UTR CAA 90 bp | GACGGCCTGTTTCATGGCGTGCTTCTCCTGAAGAGCTGGTTGGATTTTCTCCATACACCCTCGTTGCTCTaGTTCAGCACGTTCAGACAG | + |
|
Preference number: 5 (lower is better) Translates to: DGLFHGVLLLKSWLDFLHTPSLL*FSTFRQ Trigger: CTGTCTGAACGTGCTGAACAAGAGCAACGAGGGTGT...ATGGAGAAAATCCAACCAGCTCTTCAGGAGAAGCACGCCATGAAACAGGCCGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000676468.1 |
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| CDS-3UTR CAA 90 bp | GACGGCCTGTTTCATGGCGTGCTTCTCCTGAAGAGCTGGTTGGATTTTCTCCATACATCCTCGTTGCTCTaGTTCAGCACGTTCAGACAG | + |
|
Preference number: 5 (lower is better) Translates to: DGLFHGVLLLKSWLDFLHTSSLL*FSTFRQ Trigger: CTGTCTGAACGTGCTGAACAAGAGCAACGAGGATGT...ATGGAGAAAATCCAACCAGCTCTTCAGGAGAAGCACGCCATGAAACAGGCCGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000243040.10 |
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| CDS-3UTR CAA 90 bp | GACGGCCTGTTTCATGGCGTGCTTCTCCTGAAGAGCTGGTTGGATTTTCTCCATGGACATACATCCTCGTaGCTCTTGTTCAGCACGTTC | + |
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Preference number: 5 (lower is better) Translates to: DGLFHGVLLLKSWLDFLHGHTSS*LLFSTF Trigger: GAACGTGCTGAACAAGAGCAACGAGGATGTATGTCC...ATGGAGAAAATCCAACCAGCTCTTCAGGAGAAGCACGCCATGAAACAGGCCGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000243040.10 |
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| CDS-3UTR CAA 90 bp | GACGGCCTGTTTCATGGCGTGCTTCTCCTGAAGAGCTGGTTGGATTTTCTCCATAGACAAACACCCTCGTaGCTCTTGTTCAGCACGTTC | + |
|
Preference number: 5 (lower is better) Translates to: DGLFHGVLLLKSWLDFLHRQTPS*LLFSTF Trigger: GAACGTGCTGAACAAGAGCAACGAGGGTGTTTGTCT...ATGGAGAAAATCCAACCAGCTCTTCAGGAGAAGCACGCCATGAAACAGGCCGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000676468.1 |
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| CDS CCA 90 bp | GTAATGGATTTTCTCGTTTCAGGTAAGAAAAACTGGGTTAGGAGGTaGGACGAGAGAAGCAGGTTCGCCACTTTAGGTTACCCTCACCCG | + |
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Preference number: 5 (lower is better) Translates to: VMDFLVSGKKNWVRR*DERSRFATLGYPHP Trigger: CGGGTGAGGGTAACCTAAAGTGGCGAACCTGCTTCTCTCGTCCCACCTCCTAACCCAGTTTTTCTTACCTGAAACGAGAAAATCCATTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 10 transcripts: ENST00000547228.1 ENST00000549995.1 ENST00000550069.2 ENST00000550513.1 ENST00000552548.6 ENST00000677184.1 ENST00000677199.1 ENST00000677712.1 ENST00000678256.1 ENST00000678284.1 |
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| CDS CCA 90 bp | GGTATACGATATGTAATGGATTTTCTCGTTTCAGGTAAGAAAAACTaGGTTAGGAGGTGGGACGAGAGAAGCAGGTTCGCCACTTTAGGT | + |
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Preference number: 5 (lower is better) Translates to: GIRYVMDFLVSGKKN*VRRWDERSRFATLG Trigger: ACCTAAAGTGGCGAACCTGCTTCTCTCGTCCCACCTCCTAACCCAGTTTTTCTTACCTGAAACGAGAAAATCCATTACATATCGTATACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 10 transcripts: ENST00000547228.1 ENST00000549995.1 ENST00000550069.2 ENST00000550513.1 ENST00000552548.6 ENST00000677184.1 ENST00000677199.1 ENST00000677712.1 ENST00000678256.1 ENST00000678284.1 |
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| CDS GCA 90 bp | GGAGCAGAGGAATGTCCTGTACTTTTCAATTCTAGGCAGGCAACATaGAAAGGGTTCATGAAGCGGTATACGATATGTAATGGATTTTCT | + |
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Preference number: 5 (lower is better) Translates to: GAEECPVLFNSRQAT*KGFMKRYTICNGFS Trigger: AGAAAATCCATTACATATCGTATACCGCTTCATGAACCCTTTGCATGTTGCCTGCCTAGAATTGAAAAGTACAGGACATTCCTCTGCTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 10 transcripts: ENST00000547228.1 ENST00000549995.1 ENST00000550069.2 ENST00000550513.1 ENST00000552548.6 ENST00000677184.1 ENST00000677199.1 ENST00000677712.1 ENST00000678256.1 ENST00000678284.1 |
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| CDS TCA 90 bp | GTCCTGTACTTTTCAATTCTAGGCAGGCAACATGCAAAGGGTTCATaGAGCGGTATACGATATGTAATGGATTTTCTCGTTTCAGGTAAG | + |
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Preference number: 5 (lower is better) Translates to: VLYFSILGRQHAKGS*SGIRYVMDFLVSGK Trigger: CTTACCTGAAACGAGAAAATCCATTACATATCGTATACCGCTTCATGAACCCTTTGCATGTTGCCTGCCTAGAATTGAAAAGTACAGGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 10 transcripts: ENST00000547228.1 ENST00000549995.1 ENST00000550069.2 ENST00000550513.1 ENST00000552548.6 ENST00000677184.1 ENST00000677199.1 ENST00000677712.1 ENST00000678256.1 ENST00000678284.1 |
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| CDS TCA 90 bp | CTACTACACACTACTATTCCTGTGTTCCTTTTAGCCTGTCAGTTCTaGGACTACAGATTAAAGATGCCCTACTGCCATAACTTGCTCATT | + |
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Preference number: 5 (lower is better) Translates to: LLHTTIPVFLLACQF*DYRLKMPYCHNLLI Trigger: AATGAGCAAGTTATGGCAGTAGGGCATCTTTAATCTGTAGTCTCAGAACTGACAGGCTAAAAGGAACACAGGAATAGTAGTGTGTAGTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000552341.5 ENST00000677712.1 ENST00000678256.1 |
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| CDS GCA 72 bp | GGAAGTCTCTCGGCGAGCAACGCTCTAGCCGTCCTCTaGGCGTCTCGGTGGCGCCGGGAGGCCTCGCTGCGC | + |
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Preference number: 6 (lower is better) Translates to: GSLSASNALAVL*ASRWRREASLR Trigger: GCGCAGCGAGGCCTCCCGGCGCCACCGAGACGCGCAGAGGACGGCTAGAGCGTTGCTCGCCGAGAGACTTCC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000551018.5 |
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| CDS CCA 72 bp | GCGAGCAACGCTCTAGCCGTCCTCTGCGCGTCTCGGTaGCGCCGGGAGGCCTCGCTGCGCCAGACAGCTCTA | + |
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Preference number: 6 (lower is better) Translates to: ASNALAVLCASR*RREASLRQTAL Trigger: TAGAGCTGTCTGGCGCAGCGAGGCCTCCCGGCGCCACCGAGACGCGCAGAGGACGGCTAGAGCGTTGCTCGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000551018.5 |
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| CDS GCA 72 bp | TCCTCTGCGCGTCTCGGTGGCGCCGGGAGGCCTCGCTaGGCCAGACAGCTCTATGATCCTCCGTCCCGGAAG | + |
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Preference number: 6 (lower is better) Translates to: SSARLGGAGRPR*ARQLYDPPSRK Trigger: CTTCCGGGACGGAGGATCATAGAGCTGTCTGGCGCAGCGAGGCCTCCCGGCGCCACCGAGACGCGCAGAGGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000551018.5 |
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| CDS TCA 72 bp | TGGCGCCGGGAGGCCTCGCTGCGCCAGACAGCTCTATaGTCCTCCGTCCCGGAAGGGAAGGAGGGGCTTGAG | + |
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Preference number: 6 (lower is better) Translates to: WRREASLRQTAL*SSVPEGKEGLE Trigger: CTCAAGCCCCTCCTTCCCTTCCGGGACGGAGGATCATAGAGCTGTCTGGCGCAGCGAGGCCTCCCGGCGCCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000551018.5 |
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| CDS CCA 72 bp | GGGAGAAAGGAGCGCGGCCGGGGAGGGGGCAGGTCCTaGGATCGGATAGAGGTTTCGCCTGGGAAAGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: GRKERGRGGGRS*DRIEVSPGKGR Trigger: CCTACCTTTCCCAGGCGAAACCTCTATCCGATCCCAGGACCTGCCCCCTCCCCGGCCGCGCTCCTTTCTCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000550513.1 |
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| CDS CCA 72 bp | ATAGAGGTTTCGCCTGGGAAAGGTAGGCTGCCAACTTaGAACCGGGCGCGAGAAGTACGCGTGGGCAAGGGG | + |
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Preference number: 6 (lower is better) Translates to: IEVSPGKGRLPT*NRAREVRVGKG Trigger: CCCCTTGCCCACGCGTACTTCTCGCGCCCGGTTCCAAGTTGGCAGCCTACCTTTCCCAGGCGAAACCTCTAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000550513.1 |
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| CDS GCA 72 bp | AGGCAGAAGAATCTCTTGAACTCGGGAGGCGGAGGTTaGAGTAAGCCAAGATCTCACCATTGCGCTCCAGCC | + |
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Preference number: 6 (lower is better) Translates to: RQKNLLNSGGGG*SKPRSHHCAPA Trigger: GGCTGGAGCGCAATGGTGAGATCTTGGCTTACTGCAACCTCCGCCTCCCGAGTTCAAGAGATTCTTCTGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 9 transcripts: ENST00000547130.6 ENST00000550880.5 ENST00000551223.5 ENST00000552341.5 ENST00000552548.6 ENST00000552742.6 ENST00000553171.2 ENST00000677712.1 ENST00000678256.1 |
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| CDS CCA 72 bp | TGCAGTAAGCCAAGATCTCACCATTGCGCTCCAGCCTaGGCGACAGAGCGAAATTCCGTCCTCGTTGCTCTT | + |
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Preference number: 6 (lower is better) Translates to: CSKPRSHHCAPA*ATERNSVLVAL Trigger: AAGAGCAACGAGGACGGAATTTCGCTCTGTCGCCCAGGCTGGAGCGCAATGGTGAGATCTTGGCTTACTGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000551223.5 ENST00000552341.5 ENST00000553171.2 |
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| CDS TCA 72 bp | AAGCAAGAATTAAGGGAAAAACTAGCCAGCCCAGCATaGGCCATGATTCCGCCAGCCAGCCTGCTTGGCCTC | + |
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Preference number: 6 (lower is better) Translates to: KQELREKLASPA*AMIPPASLLGL Trigger: GAGGCCAAGCAGGCTGGCTGGCGGAATCATGGCTCATGCTGGGCTGGCTAGTTTTTCCCTTAATTCTTGCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000550513.1 ENST00000550964.6 ENST00000552341.5 ENST00000677184.1 ENST00000677712.1 ENST00000678256.1 |
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| CDS GCA 72 bp | CTGAATTTCCCTTCCCTGTTTAGAGGGGCATCCACATaGTCTCACTCACCTTCTCTACATAGTACCCAGTTC | + |
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Preference number: 6 (lower is better) Translates to: LNFPSLFRGAST*SHSPSLHSTQF Trigger: GAACTGGGTACTATGTAGAGAAGGTGAGTGAGAGCATGTGGATGCCCCTCTAAACAGGGAAGGGAAATTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000548984.1 ENST00000677184.1 ENST00000677326.1 ENST00000678256.1 ENST00000678284.1 |
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| CDS CAA 72 bp | CCTGCCTCATCCCATCTCTCACTCTCTAAGCAGTTCTaGCAATTCTTCCCATTAGCCCCTCCAGAAAGACTA | + |
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Preference number: 6 (lower is better) Translates to: PASSHLSLSKQF*QFFPLAPPERL Trigger: TAGTCTTTCTGGAGGGGCTAATGGGAAGAATTGCAAGAACTGCTTAGAGAGTGAGAGATGGGATGAGGCAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000550964.6 ENST00000552341.5 ENST00000677184.1 ENST00000677712.1 ENST00000678256.1 |
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| CDS CAA 90 bp | CCCTCTTGTCCTGCCTCATCCCATCTCTCACTCTCTAAGCAGTTCTaGCAATTCTTCCCATTAGCCCCTCCAGAAAGACTAGACATGTTT | + |
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Preference number: 6 (lower is better) Translates to: PSCPASSHLSLSKQF*QFFPLAPPERLDMF Trigger: AAACATGTCTAGTCTTTCTGGAGGGGCTAATGGGAAGAATTGCAAGAACTGCTTAGAGAGTGAGAGATGGGATGAGGCAGGACAAGAGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000550964.6 ENST00000552341.5 ENST00000677184.1 ENST00000677712.1 ENST00000678256.1 |
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| CDS CCA 72 bp | AACTCTACTATTAATACAAAAATTAGCCGGTCGTGGTaGCGCGTACCTAAAGTCCCAGCTACTCGGGAGACT | + |
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Preference number: 6 (lower is better) Translates to: NSTINTKISRSW*RVPKVPATRET Trigger: AGTCTCCCGAGTAGCTGGGACTTTAGGTACGCGCCACCACGACCGGCTAATTTTTGTATTAATAGTAGAGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000551223.5 ENST00000552341.5 ENST00000677712.1 ENST00000678256.1 |
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| CDS CAA 72 bp | TTGGTTAGAAAATCTATCTTCCTCTTGAAGAAGTCCTaGGCATCCTCAGCTGTCTGGTCCAGCTGGTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: LVRKSIFLLKKS*ASSAVWSSWFL Trigger: CAAGAACCAGCTGGACCAGACAGCTGAGGATGCCAAGGACTTCTTCAAGAGGAAGATAGATTTTCTAACCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000550846.5 |
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| CDS TCA 72 bp | GGAAGGAGGGGCTTGAGCCTCTCAGAGACTGTTGTGTaGGTTCATTTCATAAAATGTCTTAAGCCTAGTATT | + |
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Preference number: 6 (lower is better) Translates to: GRRGLSLSETVV*VHFIKCLKPSI Trigger: AATACTAGGCTTAAGACATTTTATGAAATGAACTCACACAACAGTCTCTGAGAGGCTCAAGCCCCTCCTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000551018.5 |
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| CDS CAA 72 bp | TTGGTTAGAAAATCTATCTTCCTCTTGAAGAAGTCCTaGGCATCCTCAGCTGTCTACAAGATCAGAGGTGAA | + |
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Preference number: 6 (lower is better) Translates to: LVRKSIFLLKKS*ASSAVYKIRGE Trigger: TTCACCTCTGATCTTGTAGACAGCTGAGGATGCCAAGGACTTCTTCAAGAGGAAGATAGATTTTCTAACCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000548984.1 ENST00000552742.6 ENST00000677184.1 ENST00000677326.1 ENST00000678256.1 ENST00000678284.1 |
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| CDS GCA 72 bp | GAATGTCCTGTACTTTTCAATTCTAGGCAGGCAACATaGAAAGGGTTCATGAAGCGGTATACGATATGTAAT | + |
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Preference number: 6 (lower is better) Translates to: ECPVLFNSRQAT*KGFMKRYTICN Trigger: ATTACATATCGTATACCGCTTCATGAACCCTTTGCATGTTGCCTGCCTAGAATTGAAAAGTACAGGACATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 10 transcripts: ENST00000547228.1 ENST00000549995.1 ENST00000550069.2 ENST00000550513.1 ENST00000552548.6 ENST00000677184.1 ENST00000677199.1 ENST00000677712.1 ENST00000678256.1 ENST00000678284.1 |
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| CDS CAA 72 bp | TGCAGTCGGGGTTATAATTGCTGGTATTTAGTTCGTTaGGATCATGATTCCTTCCTGTGTGTTCATCTCATT | + |
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Preference number: 6 (lower is better) Translates to: CSRGYNCWYLVR*DHDSFLCVHLI Trigger: AATGAGATGAACACACAGGAAGGAATCATGATCCAAACGAACTAAATACCAGCAATTATAACCCCGACTGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000553171.2 ENST00000677199.1 ENST00000678284.1 |
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| CDS CAA 90 bp | AACAGAGCCAAGCTCCCTGTTTCTATATCCTCCTATTTTTGTCTATaGCCTGTATCTTCTAAGATATTAGCAAAGTGTAAACCACCAGCT | + |
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Preference number: 6 (lower is better) Translates to: NRAKLPVSISSYFCL*PVSSKILAKCKPPA Trigger: AGCTGGTGGTTTACACTTTGCTAATATCTTAGAAGATACAGGCAATAGACAAAAATAGGAGGATATAGAAACAGGGAGCTTGGCTCTGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000552341.5 ENST00000677712.1 ENST00000678256.1 |
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| CDS TCA 72 bp | TTTTCAATTCTAGGCAGGCAACATGCAAAGGGTTCATaGAGCGGTATACGATATGTAATGGATTTTCTCGTT | + |
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Preference number: 6 (lower is better) Translates to: FSILGRQHAKGS*SGIRYVMDFLV Trigger: AACGAGAAAATCCATTACATATCGTATACCGCTTCATGAACCCTTTGCATGTTGCCTGCCTAGAATTGAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 10 transcripts: ENST00000547228.1 ENST00000549995.1 ENST00000550069.2 ENST00000550513.1 ENST00000552548.6 ENST00000677184.1 ENST00000677199.1 ENST00000677712.1 ENST00000678256.1 ENST00000678284.1 |
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