RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PFDN4 (Homo sapiens)

Ensembl gene IDs: ENSG00000101132

Ensembl transcript IDs: ENST00000371419.7, ENST00000441080.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp CCTGGAGGCCTCAGGAAACTTACAATCATGGCAGAAGGCGAAGAGGAAGTAAGCGTGACTCTTGTCCGTTaGCTTTTCCATCATCTTCTT +
Preference number: 2 (lower is better)
Translates to: PGGLRKLTIMAEGEEEVSVTLVR*LFHHLL
Trigger: AAGAAGATGATGGAAAAGTCAACGGACAAGAGTCAC...GCTTACTTCCTCTTCGCCTTCTGCCATGATTGTAAGTTTCCTGAGGCCTCCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000441080.2
3UTR CAA 90 bp CACATCTCTTGGTTTCTAAAACGTTCTTCTGTGGTTCTGCCCTGTTaGTATAAAGCTCCACATGCCTCCACATGTTTAAACATTACCCAT +
Preference number: 2 (lower is better)
Translates to: HISWFLKRSSVVLPC*YKAPHASTCLNITH
Trigger: ATGGGTAATGTTTAAACATGTGGAGGCATGTGGAGCTTTATACAAACAGGGCAGAACCACAGAAGAACGTTTTAGAAACCAAGAGATGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371419.7
3UTR-3UTR TCA 90 bp CTGCCCTGTTTGTATAAAGCTCCACATGCCTCCACATGTTTAAACATTACCCATCTGATTTTAATAACATaGCATGAAGCCCCTAGACTT +
Preference number: 2 (lower is better)
Translates to: LPCLYKAPHASTCLNITHLILIT*HEAPRL
Trigger: AAGTCTAGGGGCTTCATGTCATGTTATTAAAATCAG...ATGGGTAATGTTTAAACATGTGGAGGCATGTGGAGCTTTATACAAACAGGGCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371419.7
3UTR-3UTR CAA 90 bp GTGGTTCTGCCCTGTTTGTATAAAGCTCCACATGCCTCCACATGTTTAAACATTAGCAAGGATGCAGGATaGTACATCTTTTCATCGTGC +
Preference number: 3 (lower is better)
Translates to: VVLPCLYKAPHASTCLNISKDAG*YIFSSC
Trigger: GCACGATGAAAAGATGTACAATCCTGCATCCTTGCT...AATGTTTAAACATGTGGAGGCATGTGGAGCTTTATACAAACAGGGCAGAACCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371419.7
CDS-3UTR CCA 90 bp GAAATAAGCAAGGATGCAGGATTGTACATCTTTTCATCGTGCTTTCCCCGTCATCAGCCGCCTTCTTCATaGTGGCCGCCATCTTGGGAC +
Preference number: 4 (lower is better)
Translates to: EISKDAGLYIFSSCFPRHQPPSS*WPPSWD
Trigger: GTCCCAAGATGGCGGCCACCATGAAGAAGGCGGCTG...ATGACGGGGAAAGCACGATGAAAAGATGTACAATCCTGCATCCTTGCTTATTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371419.7
CDS-3UTR CCA 90 bp TTCTGCAGGCTTAACAGGAAGCATGACCTGGAGGCCTCAGGAAACTTACAATCAACAGGAAGCATGACCTaGAGGCCTCAGGAAACTTAC +
Preference number: 4 (lower is better)
Translates to: FCRLNRKHDLEASGNLQSTGSMT*RPQETY
Trigger: GTAAGTTTCCTGAGGCCTCCAGGTCATGCTTCCTGT...TGATTGTAAGTTTCCTGAGGCCTCCAGGTCATGCTTCCTGTTAAGCCTGCAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000441080.2
CDS-3UTR GCA 90 bp GGCTTAACAGGAAGCATGACCTGGAGGCCTCAGGAAACTTACAATCATGGCAGAAACATTGACATCTTCTaGAGCCGCCTTCTTCATGGT +
Preference number: 4 (lower is better)
Translates to: GLTGSMTWRPQETYNHGRNIDIF*SRLLHG
Trigger: ACCATGAAGAAGGCGGCTGCAGAAGATGTCAATGTT...TCTGCCATGATTGTAAGTTTCCTGAGGCCTCCAGGTCATGCTTCCTGTTAAGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000441080.2
CDS-3UTR TCA 90 bp GGCTTAACAGGAAGCATGACCTGGAGGCCTCAGGAAACTTACAATCATGGCAGAGTGACTCTTGTCCGTTaGCTTTTCCATCATCTTCTT +
Preference number: 4 (lower is better)
Translates to: GLTGSMTWRPQETYNHGRVTLVR*LFHHLL
Trigger: AAGAAGATGATGGAAAAGTCAACGGACAAGAGTCAC...TCTGCCATGATTGTAAGTTTCCTGAGGCCTCCAGGTCATGCTTCCTGTTAAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000441080.2
CDS-3UTR GCA 90 bp AGTTGTGAAATAAGCAAGGATGCAGGATTGTACATCTTTTCATCGTGCTTTCCCAACATTGACATCTTCTaGAGCCGCCTTCTTCATGGT +
Preference number: 4 (lower is better)
Translates to: SCEISKDAGLYIFSSCFPNIDIF*SRLLHG
Trigger: ACCATGAAGAAGGCGGCTGCAGAAGATGTCAATGTT...GGGAAAGCACGATGAAAAGATGTACAATCCTGCATCCTTGCTTATTTCACAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371419.7
CDS-3UTR GCA 90 bp CTGCCCTGTTTGTATAAAGCTCCACATGCCTCCACATGTTTAAACATTACCCATGTTCTTCTGTGGTTCTaGCCTGTTTGTATAAAGCTC +
Preference number: 4 (lower is better)
Translates to: LPCLYKAPHASTCLNITHVLLWF*PVCIKL
Trigger: GAGCTTTATACAAACAGGGCAGAACCACAGAAGAAC...ATGGGTAATGTTTAAACATGTGGAGGCATGTGGAGCTTTATACAAACAGGGCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000371419.7
3UTR CAA 72 bp TGGTTTCTAAAACGTTCTTCTGTGGTTCTGCCCTGTTaGTATAAAGCTCCACATGCCTCCACATGTTTAAAC +
Preference number: 4 (lower is better)
Translates to: WFLKRSSVVLPC*YKAPHASTCLN
Trigger: GTTTAAACATGTGGAGGCATGTGGAGCTTTATACAAACAGGGCAGAACCACAGAAGAACGTTTTAGAAACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371419.7
CDS-3UTR TCA 90 bp GTGGTTCTGCCCTGTTTGTATAAAGCTCCACATGCCTCCACATGTTTAAACATTCTGATTTTAATAACATaGCATGAAGCCCCTAGACTT +
Preference number: 4 (lower is better)
Translates to: VVLPCLYKAPHASTCLNILILIT*HEAPRL
Trigger: AAGTCTAGGGGCTTCATGTCATGTTATTAAAATCAG...AATGTTTAAACATGTGGAGGCATGTGGAGCTTTATACAAACAGGGCAGAACCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371419.7
CDS-3UTR CCA 90 bp CTGCCCTGTTTGTATAAAGCTCCACATGCCTCCACATGTTTAAACATTACCCATTTTCTGCACATCTCTTaGTTTCTAAAACGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: LPCLYKAPHASTCLNITHFLHIS*FLKRSS
Trigger: AGAAGAACGTTTTAGAAACCAAGAGATGTGCAGAAA...ATGGGTAATGTTTAAACATGTGGAGGCATGTGGAGCTTTATACAAACAGGGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371419.7
CDS-3UTR CAA 90 bp AGTTGTGAAATAAGCAAGGATGCAGGATTGTACATCTTTTCATCGTGCTTTCCCGTGGTTCTGCCCTGTTaGTATAAAGCTCCACATGCC +
Preference number: 5 (lower is better)
Translates to: SCEISKDAGLYIFSSCFPVVLPC*YKAPHA
Trigger: GGCATGTGGAGCTTTATACAAACAGGGCAGAACCAC...GGGAAAGCACGATGAAAAGATGTACAATCCTGCATCCTTGCTTATTTCACAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371419.7
CDS-3UTR CAA 90 bp AGTTGTGAAATAAGCAAGGATGCAGGATTGTACATCTTTTCATCGTGCTTTCCCAGCAAGGATGCAGGATaGTACATCTTTTCATCGTGC +
Preference number: 5 (lower is better)
Translates to: SCEISKDAGLYIFSSCFPSKDAG*YIFSSC
Trigger: GCACGATGAAAAGATGTACAATCCTGCATCCTTGCT...GGGAAAGCACGATGAAAAGATGTACAATCCTGCATCCTTGCTTATTTCACAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371419.7