Pregenerated sensors for PFDN2 (Homo sapiens)

Ensembl gene IDs: ENSG00000143256

Ensembl transcript IDs: ENST00000368010.4, ENST00000468311.1

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TCCATCTCCAACTCAGCTGCTTTGGATGCCAGGCCTCGCTGTTCCTaGCGAAGGCGGTTGAAGCCAGCAATCACCTGCTCTGCGGACACC	+
Preference number: 5 (lower is better) Translates to: SISNSAALDARPRCS*RRRLKPAITCSADT Trigger: GGTGTCCGCAGAGCAGGTGATTGCTGGCTTCAACCGCCTTCGGCAGGAACAGCGAGGCCTGGCATCCAAAGCAGCTGAGTTGGAGATGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368010.4
CDS TCA 90 bp	TCTGTATCTGCTCCTTGTTGTTCTCCAAAGCGGGCAGCACCTCTTTaGCAGTTCGCTCCACCAGCACTCCTCCAACCATGCGGTAGCACT	+
Preference number: 5 (lower is better) Translates to: SVSAPCCSPKRAAPL*QFAPPALLQPCGST Trigger: AGTGCTACCGCATGGTTGGAGGAGTGCTGGTGGAGCGAACTGTCAAAGAGGTGCTGCCCGCTTTGGAGAACAACAAGGAGCAGATACAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368010.4
CDS TCA 90 bp	ATGTTGTGCTTTTCCCGGAATTCATTTAGTTCTTTTCCCTTTGCCTaGAGCTGCTGTGTCAGTGTCTCAATGATCTTCTGTATCTGCTCC	+
Preference number: 5 (lower is better) Translates to: MLCFSRNSFSSFPFA*SCCVSVSMIFCICS Trigger: GGAGCAGATACAGAAGATCATTGAGACACTGACACAGCAGCTTCAGGCAAAGGGAAAAGAACTAAATGAATTCCGGGAAAAGCACAACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368010.4
CDS TCA 90 bp	ATGTTGTGCTTTTCCCGGAATTCATTTAGTTCTTTTCCCTTTGCCTaGAGCTGCTGTGTCAGTGTCTCAATGATCTTCTGTATCTGCTCT	+
Preference number: 5 (lower is better) Translates to: MLCFSRNSFSSFPFA*SCCVSVSMIFCICS Trigger: AGAGCAGATACAGAAGATCATTGAGACACTGACACAGCAGCTTCAGGCAAAGGGAAAAGAACTAAATGAATTCCGGGAAAAGCACAACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000468311.1
CDS TCA 72 bp	TGGATGCCAGGCCTCGCTGTTCCTGCCGAAGGCGGTTaGAGCCAGCAATCACCTGCTCTGCGGACACCGCCC	+
Preference number: 6 (lower is better) Translates to: WMPGLAVPAEGG*SQQSPALRTPP Trigger: GGGCGGTGTCCGCAGAGCAGGTGATTGCTGGCTTCAACCGCCTTCGGCAGGAACAGCGAGGCCTGGCATCCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368010.4
CDS CAA 72 bp	TTGGATGCCAGGCCTCGCTGTTCCTGCCGAAGGCGGTaGAAGCCAGCAATCACCTGCTCTGCGGACACCGCC	+
Preference number: 6 (lower is better) Translates to: LDARPRCSCRRR*KPAITCSADTA Trigger: GGCGGTGTCCGCAGAGCAGGTGATTGCTGGCTTCAACCGCCTTCGGCAGGAACAGCGAGGCCTGGCATCCAA 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368010.4
CDS GCA 72 bp	AACTCAGCTGCTTTGGATGCCAGGCCTCGCTGTTCCTaGCGAAGGCGGTTGAAGCCAGCAATCACCTGCTCT	+
Preference number: 6 (lower is better) Translates to: NSAALDARPRCS*RRRLKPAITCS Trigger: AGAGCAGGTGATTGCTGGCTTCAACCGCCTTCGGCAGGAACAGCGAGGCCTGGCATCCAAAGCAGCTGAGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368010.4
CDS CAA 72 bp	CTGTGCTCATTCAACTCCATCTCCAACTCAGCTGCTTaGGATGCCAGGCCTCGCTGTTCCTGCCGAAGGCGG	+
Preference number: 6 (lower is better) Translates to: LCSFNSISNSAA*DARPRCSCRRR Trigger: CCGCCTTCGGCAGGAACAGCGAGGCCTGGCATCCAAAGCAGCTGAGTTGGAGATGGAGTTGAATGAGCACAG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368010.4
CDS CAA 90 bp	ATCACTAGGCTGTGCTCATTCAACTCCATCTCCAACTCAGCTGCTTaGGATGCCAGGCCTCGCTGTTCCTGCCGAAGGCGGTTGAAGCCA	+
Preference number: 6 (lower is better) Translates to: ITRLCSFNSISNSAA*DARPRCSCRRRLKP Trigger: TGGCTTCAACCGCCTTCGGCAGGAACAGCGAGGCCTGGCATCCAAAGCAGCTGAGTTGGAGATGGAGTTGAATGAGCACAGCCTAGTGAT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368010.4
CDS GCA 72 bp	CTCATTCAACTCCATCTCCAACTCAGCTGCTTTGGATaGCAGGCCTCGCTGTTCCTGCCGAAGGCGGTTGAA	+
Preference number: 6 (lower is better) Translates to: LIQLHLQLSCFG*QASLFLPKAVE Trigger: TTCAACCGCCTTCGGCAGGAACAGCGAGGCCTGGCATCCAAAGCAGCTGAGTTGGAGATGGAGTTGAATGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368010.4
CDS CAA 72 bp	TGCTCCTTGTTGTTCTCCAAAGCGGGCAGCACCTCTTaGACAGTTCGCTCCACCAGCACTCCTCCAACCATG	+
Preference number: 6 (lower is better) Translates to: CSLLFSKAGSTS*TVRSTSTPPTM Trigger: CATGGTTGGAGGAGTGCTGGTGGAGCGAACTGTCAAAGAGGTGCTGCCCGCTTTGGAGAACAACAAGGAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368010.4
CDS GCA 72 bp	GCTGGCTTCTCATCTTCTCCCATGAGACGAATGTTGTaGTTTTCCCGGAATTCATTTAGTTCTTTTCCCTTT	+
Preference number: 6 (lower is better) Translates to: AGFSSSPMRRML*FSRNSFSSFPF Trigger: AAAGGGAAAAGAACTAAATGAATTCCGGGAAAAGCACAACATTCGTCTCATGGGAGAAGATGAGAAGCCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000368010.4 ENST00000468311.1
CDS TCA 72 bp	TTTTCCCGGAATTCATTTAGTTCTTTTCCCTTTGCCTaGAGCTGCTGTGTCAGTGTCTCAATGATCTTCTGT	+
Preference number: 6 (lower is better) Translates to: FSRNSFSSFPFA*SCCVSVSMIFC Trigger: ACAGAAGATCATTGAGACACTGACACAGCAGCTTCAGGCAAAGGGAAAAGAACTAAATGAATTCCGGGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000368010.4 ENST00000468311.1

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