Pregenerated sensors for PEF1 (Homo sapiens)
Ensembl gene IDs: ENSG00000162517Ensembl transcript IDs: ENST00000471219.1, ENST00000472443.1, ENST00000489164.5, ENST00000492061.5, ENST00000496805.5
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTGCAGCTCCTGGGCAGCCCTCGGCCCTGCTGCCTAACTGCCTGGTaGCTTCAGGTAAGTTCTGTGTCTTCTCGGGGTTCACTTTTCTAC | + |
|
Preference number: 5 (lower is better) Translates to: LQLLGSPRPCCLTAW*LQVSSVSSRGSLFY Trigger: GTAGAAAAGTGAACCCCGAGAAGACACAGAACTTACCTGAAGTCACCAGGCAGTTAGGCAGCAGGGCCGAGGGCTGCCCAGGAGCTGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000472443.1 |
||
| CDS GCA 90 bp | GGTGTTGAACTAAGTCAGTGGTCAAACCAGCTCACTTGTGGCGCCTaGTACAACCAGAGTTTCCTGATGACTCTGATGCAGTGTGGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: GVELSQWSNQLTCGA*YNQSFLMTLMQCGV Trigger: CACCCCACACTGCATCAGAGTCATCAGGAAACTCTGGTTGTAGCAGGCGCCACAAGTGAGCTGGTTTGACCACTGACTTAGTTCAACACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000472443.1 ENST00000492061.5 ENST00000496805.5 |
||
| CDS TCA 90 bp | TGTGTCTTCTCGGGGTTCACTTTTCTACACGCGAAATGGCGGTGTTaGACTAAGTCAGTGGTCAAACCAGCTCACTTGTGGCGCCTGCTA | + |
|
Preference number: 5 (lower is better) Translates to: CVFSGFTFLHAKWRC*TKSVVKPAHLWRLL Trigger: TAGCAGGCGCCACAAGTGAGCTGGTTTGACCACTGACTTAGTTCAACACCGCCATTTCGCGTGTAGAAAAGTGAACCCCGAGAAGACACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000472443.1 ENST00000492061.5 ENST00000496805.5 |
||
| CDS CCA 90 bp | GGTTCACTTTTCTACACGCGAAATGGCGGTGTTGAACTAAGTCAGTaGTCAAACCAGCTCACTTGTGGCGCCTGCTACAACCAGAGTTTC | + |
|
Preference number: 5 (lower is better) Translates to: GSLFYTRNGGVELSQ*SNQLTCGACYNQSF Trigger: GAAACTCTGGTTGTAGCAGGCGCCACAAGTGAGCTGGTTTGACCACTGACTTAGTTCAACACCGCCATTTCGCGTGTAGAAAAGTGAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000472443.1 ENST00000492061.5 ENST00000496805.5 |
||
| CDS TCA 90 bp | CCAACAAAGAATTCTGGCCACAGAATCACCTTGCTGCGGTATTCCTaGCTGAATCAAGATACGCTGGGGAAGAGGCATCTGAAGATAGCC | + |
|
Preference number: 5 (lower is better) Translates to: PTKNSGHRITLLRYS*LNQDTLGKRHLKIA Trigger: GGCTATCTTCAGATGCCTCTTCCCCAGCGTATCTTGATTCAGTCAGGAATACCGCAGCAAGGTGATTCTGTGGCCAGAATTCTTTGTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492061.5 |
||
| CDS CCA 72 bp | GAGATCGGCGGAACCAGAACTCTAAACCTCCGGTCATaGCTGATGCCCCCGCCCAAGGCCCCCATGAGGGCC | + |
|
Preference number: 6 (lower is better) Translates to: EIGGTRTLNLRS*LMPPPKAPMRA Trigger: GGCCCTCATGGGGGCCTTGGGCGGGGGCATCAGCCATGACCGGAGGTTTAGAGTTCTGGTTCCGCCGATCTC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENST00000472443.1 ENST00000489164.5 ENST00000492061.5 ENST00000496805.5 |
||
| CDS TCA 72 bp | CTGGGCAGCCCTCGGCCCTGCTGCCTAACTGCCTGGTaGCTTCAGGTAAGTTCTGTGTCTTCTCGGGGTTCA | + |
|
Preference number: 6 (lower is better) Translates to: LGSPRPCCLTAW*LQVSSVSSRGS Trigger: TGAACCCCGAGAAGACACAGAACTTACCTGAAGTCACCAGGCAGTTAGGCAGCAGGGCCGAGGGCTGCCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000472443.1 |
||
| CDS TCA 72 bp | GGTCCGGAAGCCTGGATTTTTATCCGACGCCCCAAATaGGATCGGCGGAACCAGAACTCTAAACCTCCGGTC | + |
|
Preference number: 6 (lower is better) Translates to: GPEAWIFIRRPK*DRRNQNSKPPV Trigger: GACCGGAGGTTTAGAGTTCTGGTTCCGCCGATCTCATTTGGGGCGTCGGATAAAAATCCAGGCTTCCGGACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000472443.1 ENST00000489164.5 ENST00000492061.5 ENST00000496805.5 |
||
| CDS GCA 72 bp | GTCCTGCAGCTCCTGGGCAGCCCTCTGACACCAAAGTaGACTTCAACACCCTACTATCACCCAACAAAGAAT | + |
|
Preference number: 6 (lower is better) Translates to: VLQLLGSPLTPK*TSTPYYHPTKN Trigger: ATTCTTTGTTGGGTGATAGTAGGGTGTTGAAGTGCACTTTGGTGTCAGAGGGCTGCCCAGGAGCTGCAGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492061.5 |
||
| CDS GCA 72 bp | CTAAGTCAGTGGTCAAACCAGCTCACTTGTGGCGCCTaGTACAACCAGAGTTTCCTGATGACTCTGATGCAG | + |
|
Preference number: 6 (lower is better) Translates to: LSQWSNQLTCGA*YNQSFLMTLMQ Trigger: CTGCATCAGAGTCATCAGGAAACTCTGGTTGTAGCAGGCGCCACAAGTGAGCTGGTTTGACCACTGACTTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000472443.1 ENST00000492061.5 ENST00000496805.5 |
||
| CDS CCA 72 bp | TTCTACACGCGAAATGGCGGTGTTGAACTAAGTCAGTaGTCAAACCAGCTCACTTGTGGCGCCTGCTACAAC | + |
|
Preference number: 6 (lower is better) Translates to: FYTRNGGVELSQ*SNQLTCGACYN Trigger: GTTGTAGCAGGCGCCACAAGTGAGCTGGTTTGACCACTGACTTAGTTCAACACCGCCATTTCGCGTGTAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000472443.1 ENST00000492061.5 ENST00000496805.5 |
||
| CDS TCA 72 bp | TCGGGGTTCACTTTTCTACACGCGAAATGGCGGTGTTaGACTAAGTCAGTGGTCAAACCAGCTCACTTGTGG | + |
|
Preference number: 6 (lower is better) Translates to: SGFTFLHAKWRC*TKSVVKPAHLW Trigger: CCACAAGTGAGCTGGTTTGACCACTGACTTAGTTCAACACCGCCATTTCGCGTGTAGAAAAGTGAACCCCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000472443.1 ENST00000492061.5 ENST00000496805.5 |
||
| CDS TCA 72 bp | AATTCTGGCCACAGAATCACCTTGCTGCGGTATTCCTaGCTGAATCAAGATACGCTGGGGAAGAGGCATCTG | + |
|
Preference number: 6 (lower is better) Translates to: NSGHRITLLRYS*LNQDTLGKRHL Trigger: CAGATGCCTCTTCCCCAGCGTATCTTGATTCAGTCAGGAATACCGCAGCAAGGTGATTCTGTGGCCAGAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492061.5 |
||
| CDS CAA 90 bp | GGAGGGGCGCCACTTCAGAGAAGCTTTAAGAGGCATTGTGCATTCTaGCTAGCTCTCCTGCTCCTTCTCTCTGCCACAAAGATAACATAT | + |
|
Preference number: 6 (lower is better) Translates to: GGAPLQRSFKRHCAF*LALLLLLSATKITY Trigger: ATATGTTATCTTTGTGGCAGAGAGAAGGAGCAGGAGAGCTAGCAAGAATGCACAATGCCTCTTAAAGCTTCTCTGAAGTGGCGCCCCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471219.1 |
||