Pregenerated sensors for PDZK1 (Homo sapiens)
Ensembl gene IDs: ENSG00000174827Ensembl transcript IDs: ENST00000344770.6, ENST00000417171.6, ENST00000443667.1, ENST00000451928.6
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GATCCTAAGAACTCTGTCTCCATCTTGAAGGCCAGCCTTCTCTGCTaGGCTACACTTCTCAACCACCCGGACCAGGTGGCCCTCGGTGTC | + |
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Preference number: 5 (lower is better) Translates to: DPKNSVSILKASLLC*ATLLNHPDQVALGV Trigger: GACACCGAGGGCCACCTGGTCCGGGTGGTTGAGAAGTGTAGCCCAGCAGAGAAGGCTGGCCTTCAAGATGGAGACAGAGTTCTTAGGATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000344770.6 ENST00000417171.6 ENST00000443667.1 ENST00000451928.6 |
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| CDS GCA 90 bp | ATTGATCCTAAGAACTCTGTCTCCATCTTGAAGGCCAGCCTTCTCTaGTGGGCTACACTTCTCAACCACCCGGACCAGGTGGCCCTCGGT | + |
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Preference number: 5 (lower is better) Translates to: IDPKNSVSILKASLL*WATLLNHPDQVALG Trigger: ACCGAGGGCCACCTGGTCCGGGTGGTTGAGAAGTGTAGCCCAGCAGAGAAGGCTGGCCTTCAAGATGGAGACAGAGTTCTTAGGATCAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000344770.6 ENST00000417171.6 ENST00000443667.1 ENST00000451928.6 |
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| CDS TCA 90 bp | GAGGAGCTGCTCTGTTCGTTCACTCAGGAATTCTGTCTCTGCAGGTaGGCATTAAGCTTGCAACTCACTGGACTGATGGTGCTCTTTCTA | + |
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Preference number: 5 (lower is better) Translates to: EELLCSFTQEFCLCR*ALSLQLTGLMVLFL Trigger: TAGAAAGAGCACCATCAGTCCAGTGAGTTGCAAGCTTAATGCTCACCTGCAGAGACAGAATTCCTGAGTGAACGAACAGAGCAGCTCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443667.1 |
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| CDS CCA 72 bp | AACTCTGTCTCCATCTTGAAGGCCAGCCTTCTCTGCTaGGCTACACTTCTCAACCACCCGGACCAGGTGGCC | + |
|
Preference number: 6 (lower is better) Translates to: NSVSILKASLLC*ATLLNHPDQVA Trigger: GGCCACCTGGTCCGGGTGGTTGAGAAGTGTAGCCCAGCAGAGAAGGCTGGCCTTCAAGATGGAGACAGAGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000344770.6 ENST00000417171.6 ENST00000443667.1 ENST00000451928.6 |
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| CDS GCA 72 bp | AAGAACTCTGTCTCCATCTTGAAGGCCAGCCTTCTCTaGTGGGCTACACTTCTCAACCACCCGGACCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: KNSVSILKASLL*WATLLNHPDQV Trigger: CACCTGGTCCGGGTGGTTGAGAAGTGTAGCCCAGCAGAGAAGGCTGGCCTTCAAGATGGAGACAGAGTTCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000344770.6 ENST00000417171.6 ENST00000443667.1 ENST00000451928.6 |
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| CDS CAA 90 bp | GTGGCCCTCGGTGTCCTTCTCAATTCGCAGGAAGAAGCCATAGTTTaGCCCTTCTTGCTTGGACAGTTTACATTCTCGGGGGTTGAAGGT | + |
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Preference number: 6 (lower is better) Translates to: VALGVLLNSQEEAIV*PFLLGQFTFSGVEG Trigger: ACCTTCAACCCCCGAGAATGTAAACTGTCCAAGCAAGAAGGGCAAAACTATGGCTTCTTCCTGCGAATTGAGAAGGACACCGAGGGCCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000344770.6 ENST00000417171.6 ENST00000443667.1 ENST00000451928.6 |
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| CDS TCA 72 bp | GCCCTTCTTGCTTGGACAGTTTACATTCTCGGGGGTTaGAGGTGGAGGTCATTTCTGGAGATGGAAGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: ALLAWTVYILGG*RWRSFLEMEEE Trigger: CTCCTCTTCCATCTCCAGAAATGACCTCCACCTTCAACCCCCGAGAATGTAAACTGTCCAAGCAAGAAGGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000417171.6 ENST00000443667.1 ENST00000451928.6 |
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| CDS CAA 90 bp | TTTGTCCACAAAGACACCATTGATCCTAAGAACTCTGTCTCCATCTaGAAGGCCAGCCTTCTCTGCTGGGCTACACTTCTCAACCACCCG | + |
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Preference number: 6 (lower is better) Translates to: FVHKDTIDPKNSVSI*KASLLCWATLLNHP Trigger: CGGGTGGTTGAGAAGTGTAGCCCAGCAGAGAAGGCTGGCCTTCAAGATGGAGACAGAGTTCTTAGGATCAATGGTGTCTTTGTGGACAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000344770.6 ENST00000417171.6 ENST00000443667.1 ENST00000451928.6 |
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| CDS GCA 72 bp | GAAGGTGGAGGTCATTTCTGGAGATGGAAGAGGAGCTaGTCTGTTCGTTCACTCAGGAATTCTGTCTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: EGGGHFWRWKRS*SVRSLRNSVSA Trigger: TGCAGAGACAGAATTCCTGAGTGAACGAACAGAGCAGCTCCTCTTCCATCTCCAGAAATGACCTCCACCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000443667.1 ENST00000451928.6 |
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| CDS CAA 90 bp | GGTGTCCTTCTCAATTCGCAGGAAGAAGCCATAGTTTTGCCCTTCTaGCTTGGACAGTTTACATTCTCGGGGGTTGAAGGTGGAGGTCAT | + |
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Preference number: 6 (lower is better) Translates to: GVLLNSQEEAIVLPF*LGQFTFSGVEGGGH Trigger: ATGACCTCCACCTTCAACCCCCGAGAATGTAAACTGTCCAAGCAAGAAGGGCAAAACTATGGCTTCTTCCTGCGAATTGAGAAGGACACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000344770.6 ENST00000417171.6 ENST00000443667.1 ENST00000451928.6 |
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| CDS TCA 72 bp | AAGACACCATTGATCCTAAGAACTCTGTCTCCATCTTaGAGGCCAGCCTTCTCTGCTGGGCTACACTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: KTPLILRTLSPS*RPAFSAGLHFS Trigger: TGAGAAGTGTAGCCCAGCAGAGAAGGCTGGCCTTCAAGATGGAGACAGAGTTCTTAGGATCAATGGTGTCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000344770.6 ENST00000417171.6 ENST00000443667.1 ENST00000451928.6 |
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| CDS TCA 72 bp | CTCTGTTCGTTCACTCAGGAATTCTGTCTCTGCAGGTaGGCATTAAGCTTGCAACTCACTGGACTGATGGTG | + |
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Preference number: 6 (lower is better) Translates to: LCSFTQEFCLCR*ALSLQLTGLMV Trigger: CACCATCAGTCCAGTGAGTTGCAAGCTTAATGCTCACCTGCAGAGACAGAATTCCTGAGTGAACGAACAGAG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443667.1 |
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| CDS CAA 72 bp | GGTGTCCTTCTCAATTCGCAGGAAGAAGCCATAGTTTaGCCCTTCTTGCTTGGACAGTTTACATTCTCGGGG | + |
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Preference number: 6 (lower is better) Translates to: GVLLNSQEEAIV*PFLLGQFTFSG Trigger: CCCCGAGAATGTAAACTGTCCAAGCAAGAAGGGCAAAACTATGGCTTCTTCCTGCGAATTGAGAAGGACACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000344770.6 ENST00000417171.6 ENST00000443667.1 ENST00000451928.6 |
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| CDS CAA 72 bp | AAAGACACCATTGATCCTAAGAACTCTGTCTCCATCTaGAAGGCCAGCCTTCTCTGCTGGGCTACACTTCTC | + |
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Preference number: 6 (lower is better) Translates to: KDTIDPKNSVSI*KASLLCWATLL Trigger: GAGAAGTGTAGCCCAGCAGAGAAGGCTGGCCTTCAAGATGGAGACAGAGTTCTTAGGATCAATGGTGTCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000344770.6 ENST00000417171.6 ENST00000443667.1 ENST00000451928.6 |
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| CDS TCA 72 bp | TTTTCACCTTTAGCCAGCCTGCAGAGTTTAGGCTTATaGTCTACTTCCTCTGTAGTATCTGGTGGACTTGAG | + |
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Preference number: 6 (lower is better) Translates to: FSPLASLQSLGL*STSSVVSGGLE Trigger: CTCAAGTCCACCAGATACTACAGAGGAAGTAGATCATAAGCCTAAACTCTGCAGGCTGGCTAAAGGTGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000344770.6 ENST00000417171.6 ENST00000451928.6 |
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| CDS CAA 72 bp | TTTCTGACCAGATCCACAACCTGCATATGTTCTTCTTaGTCCACAAAGACACCATTGATCCTAAGAACTCTG | + |
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Preference number: 6 (lower is better) Translates to: FLTRSTTCICSS*STKTPLILRTL Trigger: CAGAGTTCTTAGGATCAATGGTGTCTTTGTGGACAAAGAAGAACATATGCAGGTTGTGGATCTGGTCAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000344770.6 ENST00000417171.6 ENST00000443667.1 ENST00000451928.6 |
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