Pregenerated sensors for PDZD11 (Homo sapiens)
Ensembl gene IDs: ENSG00000120509Ensembl transcript IDs: ENST00000239666.9, ENST00000374454.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGCGTCTCACTGGAGTCTCAAAAGTGTATGAATCTTCTGGTAGTGCAAGGATGGCCTCCTTTCAGGGAATaGAGCTCACCTAGAAAACTA | + |
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Preference number: 2 (lower is better) Translates to: SVSLESQKCMNLLVVQGWPPFRE*SSPRKL Trigger: TAGTTTTCTAGGTGAGCTTCATTCCCTGAAAGGAGG...CCATCCTTGCACTACCAGAAGATTCATACACTTTTGAGACTCCAGTGAGACGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239666.9 |
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| CDS-3UTR CCA 90 bp | AGCGTCTCACTGGAGTCTCAAAAGTGTATGAATCTTCTGGTAGTGCAAGGATGGTCGGGCAAGGCCCAGTaGGCAGTCCACAGCGACCTC | + |
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Preference number: 4 (lower is better) Translates to: SVSLESQKCMNLLVVQGWSGKAQ*AVHSDL Trigger: GAGGTCGCTGTGGACTGCCCACTGGGCCTTGCCCGA...CCATCCTTGCACTACCAGAAGATTCATACACTTTTGAGACTCCAGTGAGACGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239666.9 |
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| CDS-3UTR TCA 90 bp | AGCGTCTCACTGGAGTCTCAAAAGTGTATGAATCTTCTGGTAGTGCAAGGATGGTCAGACTCCGCTCACTaGCAATTCAGTCTGGGAACC | + |
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Preference number: 4 (lower is better) Translates to: SVSLESQKCMNLLVVQGWSDSAH*QFSLGT Trigger: GGTTCCCAGACTGAATTGTCAGTGAGCGGAGTCTGA...CCATCCTTGCACTACCAGAAGATTCATACACTTTTGAGACTCCAGTGAGACGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239666.9 |
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| CDS-3UTR TCA 90 bp | AGCGTCTCACTGGAGTCTCAAAAGTGTATGAATCTTCTGGTAGTGCAAGGATGGTGGTGTACCCTCTCATaGGGAGGAATCCATGCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: SVSLESQKCMNLLVVQGWWCTLS*GGIHAG Trigger: TCCAGCATGGATTCCTCCTCATGAGAGGGTACACCA...CCATCCTTGCACTACCAGAAGATTCATACACTTTTGAGACTCCAGTGAGACGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239666.9 |
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| CDS-3UTR TCA 90 bp | AGCGTCTCACTGGAGTCTCAAAAGTGTATGAATCTTCTGGTAGTGCAAGGATGGATGTTAAATCCCAACTaGGCTCCAGGAGGCTTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: SVSLESQKCMNLLVVQGWMLNPN*APGGFF Trigger: GAAGAAGCCTCCTGGAGCTCAGTTGGGATTTAACAT...CCATCCTTGCACTACCAGAAGATTCATACACTTTTGAGACTCCAGTGAGACGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239666.9 |
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| CDS-3UTR GCA 90 bp | AGCGTCTCACTGGAGTCTCAAAAGTGTATGAATCTTCTGGTAGTGCAAGGATGGGGATCTCAACAGCCTTaGTGTGCTCAATATCTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: SVSLESQKCMNLLVVQGWGSQQP*CAQYLG Trigger: TCCAAGATATTGAGCACAGCAAGGCTGTTGAGATCC...CCATCCTTGCACTACCAGAAGATTCATACACTTTTGAGACTCCAGTGAGACGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239666.9 |
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| CDS TCA 90 bp | TCACAATCCAGTGGGCAGTCCACAGCGACCTCAGACTCCGCTCACTaGCAATTCAGTCTGGGAACCGGAAGCGGATGCTCCGCAGGGTCG | + |
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Preference number: 5 (lower is better) Translates to: SQSSGQSTATSDSAH*QFSLGTGSGCSAGS Trigger: CGACCCTGCGGAGCATCCGCTTCCGGTTCCCAGACTGAATTGTCAGTGAGCGGAGTCTGAGGTCGCTGTGGACTGCCCACTGGATTGTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000374454.1 |
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| CDS-3UTR CAA 90 bp | AGCGTCTCACTGGAGTCTCAAAAGTGTATGAATCTTCTGGTAGTGCAAGGATGGGAGTCAGGAATCACCTaGGAGATGAAGATGCCTAGC | + |
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Preference number: 5 (lower is better) Translates to: SVSLESQKCMNLLVVQGWESGIT*EMKMPS Trigger: GCTAGGCATCTTCATCTCCAAGGTGATTCCTGACTC...CCATCCTTGCACTACCAGAAGATTCATACACTTTTGAGACTCCAGTGAGACGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239666.9 |
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| CDS-3UTR CAA 90 bp | AGCGTCTCACTGGAGTCTCAAAAGTGTATGAATCTTCTGGTAGTGCAAGGATGGAGGATCTCAACAGCCTaGCTGTGCTCAATATCTTGG | + |
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Preference number: 5 (lower is better) Translates to: SVSLESQKCMNLLVVQGWRISTA*LCSISW Trigger: CCAAGATATTGAGCACAGCAAGGCTGTTGAGATCCT...CCATCCTTGCACTACCAGAAGATTCATACACTTTTGAGACTCCAGTGAGACGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239666.9 |
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| CDS TCA 72 bp | AGTGGGCAGTCCACAGCGACCTCAGACTCCGCTCACTaGCAATTCAGTCTGGGAACCGGAAGCGGATGCTCC | + |
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Preference number: 6 (lower is better) Translates to: SGQSTATSDSAH*QFSLGTGSGCS Trigger: GGAGCATCCGCTTCCGGTTCCCAGACTGAATTGTCAGTGAGCGGAGTCTGAGGTCGCTGTGGACTGCCCACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000374454.1 |
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| CDS CCA 72 bp | CAGCGACCTCAGACTCCGCTCACTGACAATTCAGTCTaGGAACCGGAAGCGGATGCTCCGCAGGGTCGAAAA | + |
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Preference number: 6 (lower is better) Translates to: QRPQTPLTDNSV*EPEADAPQGRK Trigger: TTTTCGACCCTGCGGAGCATCCGCTTCCGGTTCCCAGACTGAATTGTCAGTGAGCGGAGTCTGAGGTCGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000374454.1 |
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