RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PDHA1 (Homo sapiens)

Ensembl gene IDs: ENSG00000131828

Ensembl transcript IDs: ENST00000379804.1, ENST00000379805.3, ENST00000379806.9, ENST00000417819.5, ENST00000422285.7, ENST00000423505.5, ENST00000478795.1, ENST00000479146.1, ENST00000540249.5, ENST00000545074.5

Found 369 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCATTAATGCCTGGCTGGGAGTGGGTGGAGGCACATGGCAAGCGTaGCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTGCC +
Preference number: 1 (lower is better)
Translates to: AINAWLGVGGGTWQA*LHAGPTPFFKLQPA
Trigger: GGCAGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGTGCCTCCACCCACTCCCAGCCAGGCATTAATGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR CCA 90 bp AGAGAAGAGCTGGCCAATCTCCTGCCATTAATGCCTGGCTGGGAGTaGGTGGAGGCACATGGCAAGCGTGCCTGCACGCTGGACCCACCC +
Preference number: 1 (lower is better)
Translates to: REELANLLPLMPGWE*VEAHGKRACTLDPP
Trigger: GGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGTGCCTCCACCCACTCCCAGCCAGGCATTAATGGCAGGAGATTGGCCAGCTCTTCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR GCA 90 bp TCTTGTAGAGAAATGGTCAGCGCGAACAGGCTGCAGCACCAGCGCTaGTCGGGGTGGGTGCTATGGTTGGTAGAATGCTGTGAGGGGCCC +
Preference number: 1 (lower is better)
Translates to: SCREMVSANRLQHQR*SGWVLWLVECCEGP
Trigger: GGGCCCCTCACAGCATTCTACCAACCATAGCACCCACCCCGAGCAGCGCTGGTGCTGCAGCCTGTTCGCGCTGACCATTTCTCTACAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR GCA 90 bp TTAATGCCTGGCTGGGAGTGGGTGGAGGCACATGGCAAGCGTGCCTaGACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCT +
Preference number: 1 (lower is better)
Translates to: LMPGWEWVEAHGKRA*TLDPPPSLNCSLPS
Trigger: AGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGTGCCTCCACCCACTCCCAGCCAGGCATTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR CCA 90 bp TGTGACAGAGAAGAGCTGGCCAATCTCCTGCCATTAATGCCTGGCTaGGAGTGGGTGGAGGCACATGGCAAGCGTGCCTGCACGCTGGAC +
Preference number: 1 (lower is better)
Translates to: CDREELANLLPLMPG*EWVEAHGKRACTLD
Trigger: GTCCAGCGTGCAGGCACGCTTGCCATGTGCCTCCACCCACTCCCAGCCAGGCATTAATGGCAGGAGATTGGCCAGCTCTTCTCTGTCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR CCA 90 bp CAATCTCCTGCCATTAATGCCTGGCTGGGAGTGGGTGGAGGCACATaGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTG +
Preference number: 1 (lower is better)
Translates to: QSPAINAWLGVGGGT*QACLHAGPTPFFKL
Trigger: CAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGTGCCTCCACCCACTCCCAGCCAGGCATTAATGGCAGGAGATTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR GCA 90 bp GCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTaGGGTCTCCCAGTACAGAAGGGCTCAGGAGGCCTCAGAAACCAA +
Preference number: 1 (lower is better)
Translates to: AVFVSQGWSPLQTLE*GLPVQKGSGGLRNQ
Trigger: TTGGTTTCTGAGGCCTCCTGAGCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGGGAAACAAACACAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR CCA 90 bp AGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGACTCTaGAGTGCGGTCTCCCAGTACAGAAGGGCTCAGGAGGCCTCAGAA +
Preference number: 1 (lower is better)
Translates to: RQLCLFPRGGLLCRL*SAVSQYRRAQEASE
Trigger: TTCTGAGGCCTCCTGAGCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR CCA 90 bp CTTGAAGCACTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTaGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAG +
Preference number: 1 (lower is better)
Translates to: LEALTLKTAVFVSQG*SPLQTLECGLPVQK
Trigger: CTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAGTGCTTCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR TCA 90 bp CAGTACAGAAGGGCTCAGGAGGCCTCAGAAACCAAAGACAAGGCTTaGTACCAATCAGCTAAGCTGTGGCAGAGTGTCCCACCACGCTAC +
Preference number: 1 (lower is better)
Translates to: QYRRAQEASETKDKA*YQSAKLWQSVPPRY
Trigger: GTAGCGTGGTGGGACACTCTGCCACAGCTTAGCTGATTGGTATCAAGCCTTGTCTTTGGTTTCTGAGGCCTCCTGAGCCCTTCTGTACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR GCA 90 bp GCCAGCTCTCTGCAGGTACGTACCTCTAAGGCCATGTCCTACTACTaGTGGGACACGAGCGTCACCTCCATATGTGAGGAGAATGTTTTT +
Preference number: 1 (lower is better)
Translates to: ASSLQVRTSKAMSYY*WDTSVTSICEENVF
Trigger: AAAAACATTCTCCTCACATATGGAGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCTGCAGAGAGCTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR CCA 90 bp CCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTaGTTGCGGCTGCAAGGAGCTGATGCAAAGACAATTGAAAAGGTA +
Preference number: 1 (lower is better)
Translates to: PAGPYGQRTDKELID*LRLQGADAKTIEKV
Trigger: TACCTTTTCAATTGTCTTTGCATCAGCTCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR TCA 90 bp AAATTCTTATGCTGTTGTTACACAGCTGCTCAGCTCTTAAGGATCTaGTCTTTGTTTCAGATTGTTGAAGAGGGTTATACACTTTCGGAT +
Preference number: 1 (lower is better)
Translates to: KFLCCCYTAAQLLRI*SLFQIVEEGYTLSD
Trigger: ATCCGAAAGTGTATAACCCTCTTCAACAATCTGAAACAAAGATCAGATCCTTAAGAGCTGAGCAGCTGTGTAACAACAGCATAAGAATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCAGCGCTGCTCGGGGTaGGTGCTATGGTTGGTAGAA +
Preference number: 2 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGQRCSG*VLWLVE
Trigger: TTCTACCAACCATAGCACCCACCCCGAGCAGCGCTG...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCAATCAGCTAAGCTGTaGCAGAGTGTCCCACCACGC +
Preference number: 2 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGQSAKL*QSVPPR
Trigger: GCGTGGTGGGACACTCTGCCACAGCTTAGCTGATTG...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACACATGGCAAGCGTGCCTaGACGCTGGACCCACCCCCT +
Preference number: 2 (lower is better)
Translates to: PIVTGITENPAGPYGQRTHGKRA*TLDPPP
Trigger: AGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATG...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTCTATGGTTGGTAGAATaGTGTGAGGGGCCCCGCCAT +
Preference number: 2 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPLWLVE*CEGPRH
Trigger: ATGGCGGGGCCCCTCACAGCATTCTACCAACCATAG...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGATCAGCGCGAACAGGCTaGAGCACCAGCGCTGCTCGG +
Preference number: 2 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGSARTG*STSAAR
Trigger: CCGAGCAGCGCTGGTGCTGCAGCCTGTTCGCGCTGA...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTCAATCAGCTAAGCTGTaGCAGAGTGTCCCACCACGC +
Preference number: 2 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPQSAKL*QSVPPR
Trigger: GCGTGGTGGGACACTCTGCCACAGCTTAGCTGATTG...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGTGGGTGGAGGCACATaGCAAGCGTGCCTGCACGCT +
Preference number: 2 (lower is better)
Translates to: PIVTGITENPAGPYGQRTVGGGT*QACLHA
Trigger: AGCGTGCAGGCACGCTTGCCATGTGCCTCCACCCAC...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp AGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCTGTGTGGAGGCTGCAGTaGGCCATGATCACACCACTG +
Preference number: 2 (lower is better)
Translates to: RYVPLRPCPTTAGTRASPVWRLQ*AMITPL
Trigger: CAGTGGTGTGATCATGGCTCACTGCAGCCTCCACAC...AGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCAGTGAGCCTTGGTTTTaGCCTCCCGGAATATTAGGA +
Preference number: 2 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGSEPWF*PPGILG
Trigger: TCCTAATATTCCGGGAGGTCAAAACCAAGGCTCACT...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAACTGCAGCACCAGCGCTaGTCGGGGTGGGTGCTATGG +
Preference number: 2 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKLQHQR*SGWVLW
Trigger: CCATAGCACCCACCCCGAGCAGCGCTGGTGCTGCAG...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp TGCAGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACAGCGCTGCTCGGGGTaGGTGCTATGGTTGGTAGAA +
Preference number: 2 (lower is better)
Translates to: CRYVPLRPCPTTAGTRASQRCSG*VLWLVE
Trigger: TTCTACCAACCATAGCACCCACCCCGAGCAGCGCTG...TGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGAACAAACATGGAAGCTaGGACACTGCCTCAGAACTG +
Preference number: 2 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGNKHGS*DTASEL
Trigger: CAGTTCTGAGGCAGTGTCCCAGCTTCCATGTTTGTT...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTTTTGTTTCCCAGGGGTaGTCTCCTCTGCAGACTCTG +
Preference number: 2 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPFVSQG*SPLQTL
Trigger: CAGAGTCTGCAGAGGAGACCACCCCTGGGAAACAAA...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACACCTGCCATTAATGCCTaGCTGGGAGTGGGTGGAGGC +
Preference number: 2 (lower is better)
Translates to: PIVTGITENPAGPYGQRTPAINA*LGVGGG
Trigger: GCCTCCACCCACTCCCAGCCAGGCATTAATGGCAGG...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGTGTGGAGGCTGCAGTaGGCCATGATCACACCACTG +
Preference number: 2 (lower is better)
Translates to: PIVTGITENPAGPYGQRTVWRLQ*AMITPL
Trigger: CAGTGGTGTGATCATGGCTCACTGCAGCCTCCACAC...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCACCAAAGACAAGGCTTaGTACCAATCAGCTAAGCTG +
Preference number: 2 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGTKDKA*YQSAKL
Trigger: CAGCTTAGCTGATTGGTATCAAGCCTTGTCTTTGGT...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp AGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCTCTATGGTTGGTAGAATaGTGTGAGGGGCCCCGCCAT +
Preference number: 2 (lower is better)
Translates to: RYVPLRPCPTTAGTRASPLWLVE*CEGPRH
Trigger: ATGGCGGGGCCCCTCACAGCATTCTACCAACCATAG...AGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTTGGAAGCTGGGACACTaGCTCAGAACTGGTATGGTA +
Preference number: 2 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPWKLGH*LRTGMV
Trigger: TACCATACCAGTTCTGAGGCAGTGTCCCAGCTTCCA...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACAGGGGTGGTCTCCTCTaGAGACTCTGGAGTGCGGTC +
Preference number: 2 (lower is better)
Translates to: TENPAGPYGQRTDKELIDRGGLL*RLWSAV
Trigger: GACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCT...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCCCCTTCAGCACTTGCTaGAATGGTGAAACAAACAAG +
Preference number: 2 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGPFSTC*NGETNK
Trigger: CTTGTTTGTTTCACCATTCCAGCAAGTGCTGAAGGG...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACCCTGCCATTAATGCCTaGCTGGGAGTGGGTGGAGGC +
Preference number: 2 (lower is better)
Translates to: TENPAGPYGQRTDKELIDPAINA*LGVGGG
Trigger: GCCTCCACCCACTCCCAGCCAGGCATTAATGGCAGG...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGAGTGTGGAGGCTGCAGTaGGCCATGATCACACCACTG +
Preference number: 2 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGVWRLQ*AMITPL
Trigger: CAGTGGTGTGATCATGGCTCACTGCAGCCTCCACAC...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAAAGGGGTGGTCTCCTCTaGAGACTCTGGAGTGCGGTC +
Preference number: 2 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKRGGLL*RLWSAV
Trigger: GACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCT...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp AGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCTTCGGGGTGGGTGCTATaGTTGGTAGAATGCTGTGAG +
Preference number: 2 (lower is better)
Translates to: RYVPLRPCPTTAGTRASPSGWVL*LVECCE
Trigger: CTCACAGCATTCTACCAACCATAGCACCCACCCCGA...AGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp GCACTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGTCGGGGTGGGTGCTATaGTTGGTAGAATGCTGTGAG +
Preference number: 2 (lower is better)
Translates to: ALTLKTAVFVSQGWSPLQSGWVL*LVECCE
Trigger: CTCACAGCATTCTACCAACCATAGCACCCACCCCGA...CTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTAACAAACATGGAAGCTaGGACACTGCCTCAGAACTG +
Preference number: 2 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPNKHGS*DTASEL
Trigger: CAGTTCTGAGGCAGTGTCCCAGCTTCCATGTTTGTT...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACATGTCTGGTAGCCCCCTaGAGGTATAACCTCTCCTTC +
Preference number: 2 (lower is better)
Translates to: PIVTGITENPAGPYGQRTCLVAP*RYNLSF
Trigger: GAAGGAGAGGTTATACCTTCAGGGGGCTACCAGACA...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp CCTCCCGGAATATTAGGAAATTCACTTGTAGTCCCAGCTATGCAGGAGGCTGAGGTGTGGAGGCTGCAGTaGGCCATGATCACACCACTG +
Preference number: 2 (lower is better)
Translates to: PPGILGNSLVVPAMQEAEVWRLQ*AMITPL
Trigger: CAGTGGTGTGATCATGGCTCACTGCAGCCTCCACAC...CTCAGCCTCCTGCATAGCTGGGACTACAAGTGAATTTCCTAATATTCCGGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTACCAAAGACAAGGCTTaGTACCAATCAGCTAAGCTG +
Preference number: 2 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPTKDKA*YQSAKL
Trigger: CAGCTTAGCTGATTGGTATCAAGCCTTGTCTTTGGT...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATACTATGGTTGGTAGAATaGTGTGAGGGGCCCCGCCAT +
Preference number: 2 (lower is better)
Translates to: SLQVLQRTQQAPTGREQILWLVE*CEGPRH
Trigger: ATGGCGGGGCCCCTCACAGCATTCTACCAACCATAG...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACCTGCAGACTCTGGAGTaGGGTCTCCCAGTACAGAAG +
Preference number: 2 (lower is better)
Translates to: TENPAGPYGQRTDKELIDLQTLE*GLPVQK
Trigger: CTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAG...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAACTCCTCTGCAGACTCTaGAGTGCGGTCTCCCAGTAC +
Preference number: 2 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKLLCRL*SAVSQY
Trigger: GTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAG...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATATGTCTGGTAGCCCCCTaGAGGTATAACCTCTCCTTC +
Preference number: 2 (lower is better)
Translates to: SLQVLQRTQQAPTGREQICLVAP*RYNLSF
Trigger: GAAGGAGAGGTTATACCTTCAGGGGGCTACCAGACA...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACATGGAAGCTGGGACACTaGCTCAGAACTGGTATGGTA +
Preference number: 2 (lower is better)
Translates to: PIVTGITENPAGPYGQRTWKLGH*LRTGMV
Trigger: TACCATACCAGTTCTGAGGCAGTGTCCCAGCTTCCA...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAACAATCAGCTAAGCTGTaGCAGAGTGTCCCACCACGC +
Preference number: 2 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKQSAKL*QSVPPR
Trigger: GCGTGGTGGGACACTCTGCCACAGCTTAGCTGATTG...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp TGCAGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCAACACCCTTCAGCACTTaGTGGAATGGTGAAACAAAC +
Preference number: 2 (lower is better)
Translates to: CRYVPLRPCPTTAGTRASTPFST*WNGETN
Trigger: GTTTGTTTCACCATTCCAGCAAGTGCTGAAGGGTGT...TGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAATTTGTTTCCCAGGGGTaGTCTCCTCTGCAGACTCTG +
Preference number: 2 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKFVSQG*SPLQTL
Trigger: CAGAGTCTGCAGAGGAGACCACCCCTGGGAAACAAA...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAGTGAGCCTTGGTTTTaGCCTCCCGGAATATTAGGA +
Preference number: 2 (lower is better)
Translates to: SLQVLQRTQQAPTGREQISEPWF*PPGILG
Trigger: TCCTAATATTCCGGGAGGTCAAAACCAAGGCTCACT...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTCGTCACCTCCATATGTaGGGAGAATGTTTTTATTTT +
Preference number: 2 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPRHLHM*GECFYF
Trigger: AAAATAAAAACATTCTCCTCACATATGGAGGTGACG...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGTTCCCGAGTCATTTaGAATAGCCAGCTCTCTGCA +
Preference number: 2 (lower is better)
Translates to: TENPAGPYGQRTDKELIDCSRVI*NSQLSA
Trigger: TGCAGAGAGCTGGCTATTTCAAATGACTCGGGAACA...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACACTGTTGTTACACAGCTaGTCAGCTCTTAAGGATCTG +
Preference number: 2 (lower is better)
Translates to: PIVTGITENPAGPYGQRTLLLHS*SALKDL
Trigger: CAGATCCTTAAGAGCTGAGCAGCTGTGTAACAACAG...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGATATCTTGTAGAGAAATaGTCAGCGCGAACAGGCTGC +
Preference number: 2 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGYLVEK*SARTGC
Trigger: GCAGCCTGTTCGCGCTGACCATTTCTCTACAAGATA...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACAACAAACATGGAAGCTaGGACACTGCCTCAGAACTG +
Preference number: 2 (lower is better)
Translates to: TENPAGPYGQRTDKELIDNKHGS*DTASEL
Trigger: CAGTTCTGAGGCAGTGTCCCAGCTTCCATGTTTGTT...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACACACCCTTCAGCACTTaGTGGAATGGTGAAACAAAC +
Preference number: 2 (lower is better)
Translates to: TENPAGPYGQRTDKELIDTPFST*WNGETN
Trigger: GTTTGTTTCACCATTCCAGCAAGTGCTGAAGGGTGT...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAACACCCTTCAGCACTTaGTGGAATGGTGAAACAAAC +
Preference number: 2 (lower is better)
Translates to: SLQVLQRTQQAPTGREQITPFST*WNGETN
Trigger: GTTTGTTTCACCATTCCAGCAAGTGCTGAAGGGTGT...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp CCTCCCGGAATATTAGGAAATTCACTTGTAGTCCCAGCTATGCAGGAGGCTGAGAACAAACATGGAAGCTaGGACACTGCCTCAGAACTG +
Preference number: 2 (lower is better)
Translates to: PPGILGNSLVVPAMQEAENKHGS*DTASEL
Trigger: CAGTTCTGAGGCAGTGTCCCAGCTTCCATGTTTGTT...CTCAGCCTCCTGCATAGCTGGGACTACAAGTGAATTTCCTAATATTCCGGGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACCCCTTCAGCACTTGCTaGAATGGTGAAACAAACAAG +
Preference number: 2 (lower is better)
Translates to: TENPAGPYGQRTDKELIDPFSTC*NGETNK
Trigger: CTTGTTTGTTTCACCATTCCAGCAAGTGCTGAAGGG...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATACCCTTCAGCACTTGCTaGAATGGTGAAACAAACAAG +
Preference number: 2 (lower is better)
Translates to: SLQVLQRTQQAPTGREQIPFSTC*NGETNK
Trigger: CTTGTTTGTTTCACCATTCCAGCAAGTGCTGAAGGG...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR CAA 90 bp GCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTaGCGGCTGCAAGGAGCTGATGCAAAGACAATTGAAAAGGTAAAT +
Preference number: 2 (lower is better)
Translates to: AGPYGQRTDKELIDW*RLQGADAKTIEKVN
Trigger: ATTTACCTTTTCAATTGTCTTTGCATCAGCTCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGACACTTGCTGGAATGGTaGAACAAACAAGGGGTATTT +
Preference number: 2 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGHLLEW*NKQGVF
Trigger: AAATACCCCTTGTTTGTTTCACCATTCCAGCAAGTG...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAAACCAAAGACAAGGCTTaGTACCAATCAGCTAAGCTG +
Preference number: 2 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKTKDKA*YQSAKL
Trigger: CAGCTTAGCTGATTGGTATCAAGCCTTGTCTTTGGT...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CCA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGAAGTTTTAAGCTCTGTTaGCTTGAAGCACTGACTCTG +
Preference number: 2 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGSFKLC*LEALTL
Trigger: CAGAGTCAGTGCTTCAAGCCAACAGAGCTTAAAACT...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR GCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAAATGTACAAACTGCATaGAATTACTACCTGCTCAAT +
Preference number: 2 (lower is better)
Translates to: PIVTGITENPAGPYGQRTNVQTA*NYYLLN
Trigger: ATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATT...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp CTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATGTCTGGTAGCCCCCTaGAGGTATAACCTCTCCTTC +
Preference number: 2 (lower is better)
Translates to: LHAITTCSIYTLNGSFQECLVAP*RYNLSF
Trigger: GAAGGAGAGGTTATACCTTCAGGGGGCTACCAGACA...TTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR TCA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAATGTCTGGTAGCCCCCTaGAGGTATAACCTCTCCTTC +
Preference number: 2 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQCLVAP*RYNLSF
Trigger: GAAGGAGAGGTTATACCTTCAGGGGGCTACCAGACA...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR CCA 72 bp AGCGCGAACAGGCTGCAGCACCAGCGCTGCTCGGGGTaGGTGCTATGGTTGGTAGAATGCTGTGAGGGGCCC +
Preference number: 3 (lower is better)
Translates to: SANRLQHQRCSG*VLWLVECCEGP
Trigger: GGGCCCCTCACAGCATTCTACCAACCATAGCACCCACCCCGAGCAGCGCTGGTGCTGCAGCCTGTTCGCGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR CCA 72 bp GCCATTAATGCCTGGCTGGGAGTGGGTGGAGGCACATaGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTC +
Preference number: 3 (lower is better)
Translates to: AINAWLGVGGGT*QACLHAGPTPF
Trigger: GAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGTGCCTCCACCCACTCCCAGCCAGGCATTAATGGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR CCA 72 bp GAAGAGCTGGCCAATCTCCTGCCATTAATGCCTGGCTaGGAGTGGGTGGAGGCACATGGCAAGCGTGCCTGC +
Preference number: 3 (lower is better)
Translates to: EELANLLPLMPG*EWVEAHGKRAC
Trigger: GCAGGCACGCTTGCCATGTGCCTCCACCCACTCCCAGCCAGGCATTAATGGCAGGAGATTGGCCAGCTCTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR GCA 72 bp GAAATGGTCAGCGCGAACAGGCTGCAGCACCAGCGCTaGTCGGGGTGGGTGCTATGGTTGGTAGAATGCTGT +
Preference number: 3 (lower is better)
Translates to: EMVSANRLQHQR*SGWVLWLVECC
Trigger: ACAGCATTCTACCAACCATAGCACCCACCCCGAGCAGCGCTGGTGCTGCAGCCTGTTCGCGCTGACCATTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR CCA 72 bp TGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGACTCTaGAGTGCGGTCTCCCAGTACAGAAGGGCTCAGGAG +
Preference number: 3 (lower is better)
Translates to: CLFPRGGLLCRL*SAVSQYRRAQE
Trigger: CTCCTGAGCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGGGAAACAAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR GCA 72 bp TTGTATCTTGTAGAGAAATGGTCAGCGCGAACAGGCTaGAGCACCAGCGCTGCTCGGGGTGGGTGCTATGGT +
Preference number: 3 (lower is better)
Translates to: LYLVEKWSARTG*STSAARGGCYG
Trigger: ACCATAGCACCCACCCCGAGCAGCGCTGGTGCTGCAGCCTGTTCGCGCTGACCATTTCTCTACAAGATACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR GCA 72 bp AGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTaGAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGG +
Preference number: 3 (lower is better)
Translates to: RQLCLFPRGGLL*RLWSAVSQYRR
Trigger: CCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR CCA 72 bp CTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTaGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCA +
Preference number: 3 (lower is better)
Translates to: LTLKTAVFVSQG*SPLQTLECGLP
Trigger: TGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CAA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGGGTGGGTGCTATGGTaGGTAGAATGCTGTGAGGGG +
Preference number: 3 (lower is better)
Translates to: PIVTGITENPAGPYGQRTGWVLW*VECCEG
Trigger: CCCCTCACAGCATTCTACCAACCATAGCACCCACCC...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CAA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAAGGGTGGGTGCTATGGTaGGTAGAATGCTGTGAGGGG +
Preference number: 3 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKGWVLW*VECCEG
Trigger: CCCCTCACAGCATTCTACCAACCATAGCACCCACCC...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CAA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCACCACGCTACATGTTTaGTTAAAGCTTCTGTTAGTG +
Preference number: 3 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGTTLHV*LKLLLV
Trigger: CACTAACAGAAGCTTTAACAAAACATGTAGCGTGGT...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR TCA 72 bp AGGGCTCAGGAGGCCTCAGAAACCAAAGACAAGGCTTaGTACCAATCAGCTAAGCTGTGGCAGAGTGTCCCA +
Preference number: 3 (lower is better)
Translates to: RAQEASETKDKA*YQSAKLWQSVP
Trigger: TGGGACACTCTGCCACAGCTTAGCTGATTGGTATCAAGCCTTGTCTTTGGTTTCTGAGGCCTCCTGAGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CAA 90 bp TGCAGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCATCCTCCTTAACCAAGTaGAGAACACTGTCTGGTAGC +
Preference number: 3 (lower is better)
Translates to: CRYVPLRPCPTTAGTRASSSLTK*RTLSGS
Trigger: GCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGA...TGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CAA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGACTGCAGCCTGCCTTCTaGTTCCCGAGTCATTTGAAA +
Preference number: 3 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGLQPAF*FPSHLK
Trigger: TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAG...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR CCA 72 bp TATGCGACATTGACCAAAGCGTCACTGTGCAGCACATaGCTGTACTACTTCAGGAAAAGTTGTCTGGGGCTG +
Preference number: 3 (lower is better)
Translates to: YATLTKASLCST*LYYFRKSCLGL
Trigger: CAGCCCCAGACAACTTTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACGCTTTGGTCAATGTCGCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379805.3
3UTR-3UTR CAA 90 bp TGCAGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCAACCACGCTACATGTTTaGTTAAAGCTTCTGTTAGTG +
Preference number: 3 (lower is better)
Translates to: CRYVPLRPCPTTAGTRASTTLHV*LKLLLV
Trigger: CACTAACAGAAGCTTTAACAAAACATGTAGCGTGGT...TGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CAA 90 bp GCACTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGACCACGCTACATGTTTaGTTAAAGCTTCTGTTAGTG +
Preference number: 3 (lower is better)
Translates to: ALTLKTAVFVSQGWSPLQTTLHV*LKLLLV
Trigger: CACTAACAGAAGCTTTAACAAAACATGTAGCGTGGT...CTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR CCA 72 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTaGTTGCGGCTGCAAGGAGCTGATGCAAAGACAATT +
Preference number: 3 (lower is better)
Translates to: PYGQRTDKELID*LRLQGADAKTI
Trigger: AATTGTCTTTGCATCAGCTCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CAA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAAACCACGCTACATGTTTaGTTAAAGCTTCTGTTAGTG +
Preference number: 3 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKTTLHV*LKLLLV
Trigger: CACTAACAGAAGCTTTAACAAAACATGTAGCGTGGT...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CAA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAGATCTTTGTTTCAGATaGTTGAAGAGGGTTATACAC +
Preference number: 3 (lower is better)
Translates to: SLQVLQRTQQAPTGREQIDLCFR*LKRVIH
Trigger: GTGTATAACCCTCTTCAACAATCTGAAACAAAGATC...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR GCA 72 bp AACATCATATATGCGACATTGACCAAAGCGTCACTGTaGAGCACATGGCTGTACTACTTCAGGAAAAGTTGT +
Preference number: 3 (lower is better)
Translates to: NIIYATLTKASL*STWLYYFRKSC
Trigger: ACAACTTTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACGCTTTGGTCAATGTCGCATATATGATGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379805.3
3UTR-3UTR CAA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCTCCTCCTTAACCAAGTaGAGAACACTGTCTGGTAGC +
Preference number: 3 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFSSLTK*RTLSGS
Trigger: GCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGA...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR-3UTR CAA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACTCCTCCTTAACCAAGTaGAGAACACTGTCTGGTAGC +
Preference number: 3 (lower is better)
Translates to: SFNALMYKLHAITTCSIYSSLTK*RTLSGS
Trigger: GCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGA...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCGCGCCCAGGGGCACCTaGGCTCCCACGATGCCATTG +
Preference number: 4 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGAPRGT*APTMPL
Trigger: CAATGGCATCGTGGGAGCGCAGGTGCCCCTGGGCGC...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000545074.5
CDS-3UTR GCA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGGAGGCACGACGCGGGTaGCCCCAAGTCTCCTTCAGG +
Preference number: 4 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGEARRG*PQVSFR
Trigger: CCTGAAGGAGACTTGGGGGCACCCGCGTCGTGCCTC...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGTCAGCGCGAACAGGCTaGAGCACCAGCGCTGCTCGG +
Preference number: 4 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGSARTG*STSAAR
Trigger: CCGAGCAGCGCTGGTGCTGCAGCCTGTTCGCGCTGA...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCCATGGCAAGCGTGCCTaGACGCTGGACCCACCCCCT +
Preference number: 4 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGHGKRA*TLDPPP
Trigger: AGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATG...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCTGCTTGCCGGCTTCTaGGAAGCGCCAGACAGCACG +
Preference number: 4 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGLLAGF*EAPDST
Trigger: CGTGCTGTCTGGCGCTTCTCAGAAGCCGGCAAGCAG...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTGCGCCCAGGGGCACCTaGGCTCCCACGATGCCATTG +
Preference number: 4 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPAPRGT*APTMPL
Trigger: CAATGGCATCGTGGGAGCGCAGGTGCCCCTGGGCGC...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000545074.5
CDS-3UTR GCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCCAAGTCTCCTTCAGGTaGCCCAGCAGACGCCACGCC +
Preference number: 4 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGQVSFR*PSRRHA
Trigger: GGCGTGGCGTCTGCTGGGGCACCTGAAGGAGACTTG...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTCATGGCAAGCGTGCCTaGACGCTGGACCCACCCCCT +
Preference number: 4 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPHGKRA*TLDPPP
Trigger: AGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATG...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTCTGCTTGCCGGCTTCTaGGAAGCGCCAGACAGCACG +
Preference number: 4 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPLLAGF*EAPDST
Trigger: CGTGCTGTCTGGCGCTTCTCAGAAGCCGGCAAGCAG...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGTACCAGCACTCTGCTTaGCGGCTTCTGAGAAGCGCC +
Preference number: 4 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGYQHSA*RLLRSA
Trigger: GGCGCTTCTCAGAAGCCGGCAAGCAGAGTGCTGGTA...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCGCAGCTCCATCAGGATaGGCCCCTTCCCAGATCTAC +
Preference number: 4 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGAAPSG*APSQIY
Trigger: GTAGATCTGGGAAGGGGCCCATCCTGATGGAGCTGC...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCCAGCGCTGCTCGGGGTaGGTGCTATGGTTGGTAGAA +
Preference number: 4 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGQRCSG*VLWLVE
Trigger: TTCTACCAACCATAGCACCCACCCCGAGCAGCGCTG...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCCTATGGTTGGTAGAATaGTGTGAGGGGCCCCGCCAT +
Preference number: 4 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGLWLVE*CEGPRH
Trigger: ATGGCGGGGCCCCTCACAGCATTCTACCAACCATAG...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCTATGGTTGGTAGAATaGTGTGAGGGGCCCCGCCAT +
Preference number: 4 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGLWLVE*CEGPRH
Trigger: ATGGCGGGGCCCCTCACAGCATTCTACCAACCATAG...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp GCACTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGCTGCAGCACCAGCGCTaGTCGGGGTGGGTGCTATGG +
Preference number: 4 (lower is better)
Translates to: ALTLKTAVFVSQGWSPLQLQHQR*SGWVLW
Trigger: CCATAGCACCCACCCCGAGCAGCGCTGGTGCTGCAG...CTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp AGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCTTCAGCGCGAACAGGCTaGAGCACCAGCGCTGCTCGG +
Preference number: 4 (lower is better)
Translates to: RYVPLRPCPTTAGTRASPSARTG*STSAAR
Trigger: CCGAGCAGCGCTGGTGCTGCAGCCTGTTCGCGCTGA...AGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCCTGCAGACTCTGGAGTaGGGTCTCCCAGTACAGAAG +
Preference number: 4 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGLQTLE*GLPVQK
Trigger: CTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAG...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCTGCAGACTCTGGAGTaGGGTCTCCCAGTACAGAAG +
Preference number: 4 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGLQTLE*GLPVQK
Trigger: CTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAG...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TGCAGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACATGGCAAGCGTGCCTaGACGCTGGACCCACCCCCT +
Preference number: 4 (lower is better)
Translates to: CRYVPLRPCPTTAGTRASHGKRA*TLDPPP
Trigger: AGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATG...TGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCTGTCTGGTAGCCCCCTaGAGGTATAACCTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGCLVAP*RYNLSF
Trigger: GAAGGAGAGGTTATACCTTCAGGGGGCTACCAGACA...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCATGCTACCAGCACTCTaGTTGCCGGCTTCTGAGAAG +
Preference number: 4 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGMLPAL*LPASEK
Trigger: CTTCTCAGAAGCCGGCAAGCAGAGTGCTGGTAGCAT...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTTCGGCCGTGGCAAACTaGGCAGCATCCTCAATCTCC +
Preference number: 4 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPSAVAN*AASSIS
Trigger: GGAGATTGAGGATGCTGCCCAGTTTGCCACGGCCGA...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCCAAAAGGTGGGTCGCTaGAGTAGATGTGGTAGCCCA +
Preference number: 4 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGQKVGR*SRCGSP
Trigger: TGGGCTACCACATCTACTCCAGCGACCCACCTTTTG...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGTCGAATATCTGGCCCTaGTTAGCAGCACCATCGCCA +
Preference number: 4 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGSNIWP*LAAPSP
Trigger: TGGCGATGGTGCTGCTAACCAGGGCCAGATATTCGA...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000545074.5
CDS-3UTR CCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTCAGCGCTGCTCGGGGTaGGTGCTATGGTTGGTAGAA +
Preference number: 4 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPQRCSG*VLWLVE
Trigger: TTCTACCAACCATAGCACCCACCCCGAGCAGCGCTG...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGTTTGTTTCCCAGGGGTaGTCTCCTCTGCAGACTCTG +
Preference number: 4 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGFVSQG*SPLQTL
Trigger: CAGAGTCTGCAGAGGAGACCACCCCTGGGAAACAAA...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TGCAGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCAGTGGGTGGAGGCACATaGCAAGCGTGCCTGCACGCT +
Preference number: 4 (lower is better)
Translates to: CRYVPLRPCPTTAGTRASVGGGT*QACLHA
Trigger: AGCGTGCAGGCACGCTTGCCATGTGCCTCCACCCAC...TGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp AGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCTGTGGGTGGAGGCACATaGCAAGCGTGCCTGCACGCT +
Preference number: 4 (lower is better)
Translates to: RYVPLRPCPTTAGTRASPVGGGT*QACLHA
Trigger: AGCGTGCAGGCACGCTTGCCATGTGCCTCCACCCAC...AGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAGATGGTCTGTGGGGTTaGTGCCGGCCTCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: SLQVLQRTQQAPTGREQIDGLWG*CRPPGP
Trigger: TGGGCCTGGAGGCCGGCATCAACCCCACAGACCATC...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCCCCCCTTCTTTAAACTaGAGCCTGCCTTCTTGTTCC +
Preference number: 4 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGPPSLN*SLPSCS
Trigger: GGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGG...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACCATGGCAAGCGTGCCTaGACGCTGGACCCACCCCCT +
Preference number: 4 (lower is better)
Translates to: TENPAGPYGQRTDKELIDHGKRA*TLDPPP
Trigger: AGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATG...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACACGAGCATCTTCCTCATaGAGCACAGGCAGTGGCGGC +
Preference number: 4 (lower is better)
Translates to: PIVTGITENPAGPYGQRTRASSS*STGSGG
Trigger: GCCGCCACTGCCTGTGCTTCATGAGGAAGATGCTCG...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp GCGACATTGACCAAAGCGTCACTGTGCAGCACATGGCTGTACTACTTCAGGAAAGATGGTCTGTGGGGTTaGTGCCGGCCTCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: ATLTKASLCSTWLYYFRKDGLWG*CRPPGP
Trigger: TGGGCCTGGAGGCCGGCATCAACCCCACAGACCATC...TTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACGCTTTGGTCAATGTCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379805.3
CDS-3UTR TCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAAGATGGTCTGTGGGGTTaGTGCCGGCCTCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKDGLWG*CRPPGP
Trigger: TGGGCCTGGAGGCCGGCATCAACCCCACAGACCATC...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTTGTCTGGTAGCCCCCTaGAGGTATAACCTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPCLVAP*RYNLSF
Trigger: GAAGGAGAGGTTATACCTTCAGGGGGCTACCAGACA...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp AGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCTAGTCGCACCGCGGCGTaGCAGAGTCGTAATAACGTC +
Preference number: 4 (lower is better)
Translates to: RYVPLRPCPTTAGTRASPSRTAA*QSRNNV
Trigger: GACGTTATTACGACTCTGTCACGCCGCGGTGCGACT...AGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000379806.9
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAAGGCACATGGCAAGCGTaGCTGCACGCTGGACCCACC +
Preference number: 4 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKGTWQA*LHAGPT
Trigger: GGTGGGTCCAGCGTGCAGGCACGCTTGCCATGTGCC...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACACAGCTCTTCCAAAGGTaGCTCAGGATCGGCCGTGGC +
Preference number: 4 (lower is better)
Translates to: PIVTGITENPAGPYGQRTQLFQR*LRIGRG
Trigger: GCCACGGCCGATCCTGAGCCACCTTTGGAAGAGCTG...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCAACAAACATGGAAGCTaGGACACTGCCTCAGAACTG +
Preference number: 4 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGNKHGS*DTASEL
Trigger: CAGTTCTGAGGCAGTGTCCCAGCTTCCATGTTTGTT...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp AGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCTCTCCTCTGCAGACTCTaGAGTGCGGTCTCCCAGTAC +
Preference number: 4 (lower is better)
Translates to: RYVPLRPCPTTAGTRASPLLCRL*SAVSQY
Trigger: GTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAG...AGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGAGTGGGTGGAGGCACATaGCAAGCGTGCCTGCACGCT +
Preference number: 4 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGVGGGT*QACLHA
Trigger: AGCGTGCAGGCACGCTTGCCATGTGCCTCCACCCAC...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATACGAGCATCTTCCTCATaGAGCACAGGCAGTGGCGGC +
Preference number: 4 (lower is better)
Translates to: SLQVLQRTQQAPTGREQIRASSS*STGSGG
Trigger: GCCGCCACTGCCTGTGCTTCATGAGGAAGATGCTCG...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp CCTCCCGGAATATTAGGAAATTCACTTGTAGTCCCAGCTATGCAGGAGGCTGAGCTGCTTGCCGGCTTCTaGGAAGCGCCAGACAGCACG +
Preference number: 4 (lower is better)
Translates to: PPGILGNSLVVPAMQEAELLAGF*EAPDST
Trigger: CGTGCTGTCTGGCGCTTCTCAGAAGCCGGCAAGCAG...CTCAGCCTCCTGCATAGCTGGGACTACAAGTGAATTTCCTAATATTCCGGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAAGTCGCACCGCGGCGTaGCAGAGTCGTAATAACGTC +
Preference number: 4 (lower is better)
Translates to: PIVTGITENPAGPYGQRTSRTAA*QSRNNV
Trigger: GACGTTATTACGACTCTGTCACGCCGCGGTGCGACT...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000379806.9
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTCTCTCAGCCCAGGAATaGAATCGCCTCTCTTGTAGT +
Preference number: 4 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPLSAQE*NRLSCS
Trigger: ACTACAAGAGAGGCGATTTCATTCCTGGGCTGAGAG...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGACCAAAGACAAGGCTTaGTACCAATCAGCTAAGCTG +
Preference number: 4 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGTKDKA*YQSAKL
Trigger: CAGCTTAGCTGATTGGTATCAAGCCTTGTCTTTGGT...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGACCTGCGCTCCCACGATaGCATTGCCCCCGTAGAAGT +
Preference number: 4 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGPALPR*HCPRRS
Trigger: ACTTCTACGGGGGCAATGGCATCGTGGGAGCGCAGG...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGACACCCTTCAGCACTTaGTGGAATGGTGAAACAAAC +
Preference number: 4 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGTPFST*WNGETN
Trigger: GTTTGTTTCACCATTCCAGCAAGTGCTGAAGGGTGT...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAGGGGTGGTCTCCTCTaGAGACTCTGGAGTGCGGTC +
Preference number: 4 (lower is better)
Translates to: SLQVLQRTQQAPTGREQIRGGLL*RLWSAV
Trigger: GACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCT...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACATCGGCCGTGGCAAACTaGGCAGCATCCTCAATCTCC +
Preference number: 4 (lower is better)
Translates to: PIVTGITENPAGPYGQRTSAVAN*AASSIS
Trigger: GGAGATTGAGGATGCTGCCCAGTTTGCCACGGCCGA...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATACAGCTCTTCCAAAGGTaGCTCAGGATCGGCCGTGGC +
Preference number: 4 (lower is better)
Translates to: SLQVLQRTQQAPTGREQIQLFQR*LRIGRG
Trigger: GCCACGGCCGATCCTGAGCCACCTTTGGAAGAGCTG...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp AGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCTCAATCAGCTAAGCTGTaGCAGAGTGTCCCACCACGC +
Preference number: 4 (lower is better)
Translates to: RYVPLRPCPTTAGTRASPQSAKL*QSVPPR
Trigger: GCGTGGTGGGACACTCTGCCACAGCTTAGCTGATTG...AGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp GCACTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGCAATCAGCTAAGCTGTaGCAGAGTGTCCCACCACGC +
Preference number: 4 (lower is better)
Translates to: ALTLKTAVFVSQGWSPLQQSAKL*QSVPPR
Trigger: GCGTGGTGGGACACTCTGCCACAGCTTAGCTGATTG...CTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp AGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCTCCATTAATGCCTGGCTaGGAGTGGGTGGAGGCACAT +
Preference number: 4 (lower is better)
Translates to: RYVPLRPCPTTAGTRASPPLMPG*EWVEAH
Trigger: ATGTGCCTCCACCCACTCCCAGCCAGGCATTAATGG...AGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGACCTGCCATTAATGCCTaGCTGGGAGTGGGTGGAGGC +
Preference number: 4 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGPAINA*LGVGGG
Trigger: GCCTCCACCCACTCCCAGCCAGGCATTAATGGCAGG...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp TTTTCTTCCTCCTTAACCAAGTTGAGAACACTGTCTGGTAGCCCCCTGAAGGTAGATGGTCTGTGGGGTTaGTGCCGGCCTCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: FSSSLTKLRTLSGSPLKVDGLWG*CRPPGP
Trigger: TGGGCCTGGAGGCCGGCATCAACCCCACAGACCATC...TACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGAAGAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp TGCAGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCATGTCTGGTAGCCCCCTaGAGGTATAACCTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: CRYVPLRPCPTTAGTRASCLVAP*RYNLSF
Trigger: GAAGGAGAGGTTATACCTTCAGGGGGCTACCAGACA...TGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTTGTTCCCGAGTCATTTaGAATAGCCAGCTCTCTGCA +
Preference number: 4 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPCSRVI*NSQLSA
Trigger: TGCAGAGAGCTGGCTATTTCAAATGACTCGGGAACA...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp AGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCTATGCTACCAGCACTCTaGTTGCCGGCTTCTGAGAAG +
Preference number: 4 (lower is better)
Translates to: RYVPLRPCPTTAGTRASPMLPAL*LPASEK
Trigger: CTTCTCAGAAGCCGGCAAGCAGAGTGCTGGTAGCAT...AGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CAAAGCGTCACTGTGCAGCACATGGCTGTACTACTTCAGGAAAAGTTGTCTGGGCCTGCGCTCCCACGATaGCATTGCCCCCGTAGAAGT +
Preference number: 4 (lower is better)
Translates to: QSVTVQHMAVLLQEKLSGPALPR*HCPRRS
Trigger: ACTTCTACGGGGGCAATGGCATCGTGGGAGCGCAGG...CCCAGACAACTTTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACGCTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000379805.3
CDS-3UTR GCA 90 bp AGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCTAGCAGCAAACCTTGTTaGCTCTCGGACGCACAGGAT +
Preference number: 4 (lower is better)
Translates to: RYVPLRPCPTTAGTRASPSSKPC*LSDAQD
Trigger: ATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCT...AGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCTCCCGGAATATTAGGAAATTCACTTGTAGTCCCAGCTATGCAGGAGGCTGAGCCGAGGTGGGAGGACTaGTTGAGCCTGGAGATGGAG +
Preference number: 4 (lower is better)
Translates to: PPGILGNSLVVPAMQEAEPRWED*LSLEME
Trigger: CTCCATCTCCAGGCTCAAGCAGTCCTCCCACCTCGG...CTCAGCCTCCTGCATAGCTGGGACTACAAGTGAATTTCCTAATATTCCGGGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379806.9
CDS-3UTR GCA 90 bp GCACTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGGTAATCAGTGCTGGCTaGCGCTCTCTCAACAGACGT +
Preference number: 4 (lower is better)
Translates to: ALTLKTAVFVSQGWSPLQVISAG*RSLNRR
Trigger: ACGTCTGTTGAGAGAGCGGCAGCCAGCACTGATTAC...CTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACATCGAATATCTGGCCCTaGGCTCCCACGATGCCATTG +
Preference number: 4 (lower is better)
Translates to: PIVTGITENPAGPYGQRTSNIWP*APTMPL
Trigger: CAATGGCATCGTGGGAGCGCAGGGCCAGATATTCGA...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540249.5
CDS-3UTR CCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCTTAGTTCTTCCACACTaGCAAGATTGCTGTTCACCA +
Preference number: 4 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGLVLPH*QDCCSP
Trigger: TGGTGAACAGCAATCTTGCCAGTGTGGAAGAACTAA...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATATCGGCCGTGGCAAACTaGGCAGCATCCTCAATCTCC +
Preference number: 4 (lower is better)
Translates to: SLQVLQRTQQAPTGREQISAVAN*AASSIS
Trigger: GGAGATTGAGGATGCTGCCCAGTTTGCCACGGCCGA...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp GCACTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGTCGAATATCTGGCCCTaGTTAGCAGCACCATCGCCA +
Preference number: 4 (lower is better)
Translates to: ALTLKTAVFVSQGWSPLQSNIWP*LAAPSP
Trigger: TGGCGATGGTGCTGCTAACCAGGGCCAGATATTCGA...CTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000545074.5
CDS-3UTR CCA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATACAGCGCTGCTCGGGGTaGGTGCTATGGTTGGTAGAA +
Preference number: 4 (lower is better)
Translates to: SLQVLQRTQQAPTGREQIQRCSG*VLWLVE
Trigger: TTCTACCAACCATAGCACCCACCCCGAGCAGCGCTG...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACCAGCGCTGCTCGGGGTaGGTGCTATGGTTGGTAGAA +
Preference number: 4 (lower is better)
Translates to: TENPAGPYGQRTDKELIDQRCSG*VLWLVE
Trigger: TTCTACCAACCATAGCACCCACCCCGAGCAGCGCTG...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACCTCCTCTGCAGACTCTaGAGTGCGGTCTCCCAGTAC +
Preference number: 4 (lower is better)
Translates to: TENPAGPYGQRTDKELIDLLCRL*SAVSQY
Trigger: GTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAG...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCAGTTTTAAGCTCTGTTaGCTTGAAGCACTGACTCTG +
Preference number: 4 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGSFKLC*LEALTL
Trigger: CAGAGTCAGTGCTTCAAGCCAACAGAGCTTAAAACT...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCTCCCGGAATATTAGGAAATTCACTTGTAGTCCCAGCTATGCAGGAGGCTGAGCCTGCCATTAATGCCTaGCTGGGAGTGGGTGGAGGC +
Preference number: 4 (lower is better)
Translates to: PPGILGNSLVVPAMQEAEPAINA*LGVGGG
Trigger: GCCTCCACCCACTCCCAGCCAGGCATTAATGGCAGG...CTCAGCCTCCTGCATAGCTGGGACTACAAGTGAATTTCCTAATATTCCGGGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp TTGACCAAAGCGTCACTGTGCAGCACATGGCTGTACTACTTCAGGAAAAGTTGTCTGCTTGCCGGCTTCTaGGAAGCGCCAGACAGCACG +
Preference number: 4 (lower is better)
Translates to: LTKASLCSTWLYYFRKSCLLAGF*EAPDST
Trigger: CGTGCTGTCTGGCGCTTCTCAGAAGCCGGCAAGCAG...ACAACTTTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACGCTTTGGTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379805.3
CDS-3UTR TCA 90 bp GCGACATTGACCAAAGCGTCACTGTGCAGCACATGGCTGTACTACTTCAGGAAACACAATCCTCGTCCTTaGCTACCTGCGCTCCCACGA +
Preference number: 4 (lower is better)
Translates to: ATLTKASLCSTWLYYFRKHNPRP*LPALPR
Trigger: TCGTGGGAGCGCAGGTAGTCAAGGACGAGGATTGTG...TTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACGCTTTGGTCAATGTCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379805.3
CDS-3UTR TCA 90 bp GCACTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGCTCTCAGCCCAGGAATaGAATCGCCTCTCTTGTAGT +
Preference number: 4 (lower is better)
Translates to: ALTLKTAVFVSQGWSPLQLSAQE*NRLSCS
Trigger: ACTACAAGAGAGGCGATTTCATTCCTGGGCTGAGAG...CTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAAGTGTGGAGGCTGCAGTaGGCCATGATCACACCACTG +
Preference number: 4 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKVWRLQ*AMITPL
Trigger: CAGTGGTGTGATCATGGCTCACTGCAGCCTCCACAC...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp AAAGCGTCACTGTGCAGCACATGGCTGTACTACTTCAGGAAAAGTTGTCTGGGGTACCAGCACTCTGCTTaGCGGCTTCTGAGAAGCGCC +
Preference number: 4 (lower is better)
Translates to: KASLCSTWLYYFRKSCLGYQHSA*RLLRSA
Trigger: GGCGCTTCTCAGAAGCCGGCAAGCAGAGTGCTGGTA...CCCCAGACAACTTTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACGCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379805.3
CDS-3UTR GCA 90 bp TGCAGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCACACTGGCAAGATTaGTGTTCACCATCCTGTCCT +
Preference number: 4 (lower is better)
Translates to: CRYVPLRPCPTTAGTRASPHWQD*CSPSCP
Trigger: AGGACAGGATGGTGAACAGCAATCTTGCCAGTGTGG...TGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATACTGCAGACTCTGGAGTaGGGTCTCCCAGTACAGAAG +
Preference number: 4 (lower is better)
Translates to: SLQVLQRTQQAPTGREQILQTLE*GLPVQK
Trigger: CTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAG...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp AGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCTCCCCCTTCTTTAAACTaGAGCCTGCCTTCTTGTTCC +
Preference number: 4 (lower is better)
Translates to: RYVPLRPCPTTAGTRASPPPSLN*SLPSCS
Trigger: GGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGG...AGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAAGCAGCTCCATCAGGATaGGCCCCTTCCCAGATCTAC +
Preference number: 4 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKAAPSG*APSQIY
Trigger: GTAGATCTGGGAAGGGGCCCATCCTGATGGAGCTGC...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp TTGACCAAAGCGTCACTGTGCAGCACATGGCTGTACTACTTCAGGAAAAGTTGTCGAGCATCTTCCTCATaGAGCACAGGCAGTGGCGGC +
Preference number: 4 (lower is better)
Translates to: LTKASLCSTWLYYFRKSCRASSS*STGSGG
Trigger: GCCGCCACTGCCTGTGCTTCATGAGGAAGATGCTCG...ACAACTTTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACGCTTTGGTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379805.3
CDS-3UTR TCA 90 bp TTTTCTTCCTCCTTAACCAAGTTGAGAACACTGTCTGGTAGCCCCCTGAAGGTAGGGAGGGGCGAAGCATaGATCCAACTGCCCCAAACC +
Preference number: 4 (lower is better)
Translates to: FSSSLTKLRTLSGSPLKVGRGEA*IQLPQT
Trigger: GGTTTGGGGCAGTTGGATTCATGCTTCGCCCCTCCC...TACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGAAGAAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000379804.1
CDS-3UTR TCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGTCTGGTAGCCCCCTaGAGGTATAACCTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: TENPAGPYGQRTDKELIDCLVAP*RYNLSF
Trigger: GAAGGAGAGGTTATACCTTCAGGGGGCTACCAGACA...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp TGCAGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCATGTTCCCGAGTCATTTaGAATAGCCAGCTCTCTGCA +
Preference number: 4 (lower is better)
Translates to: CRYVPLRPCPTTAGTRASCSRVI*NSQLSA
Trigger: TGCAGAGAGCTGGCTATTTCAAATGACTCGGGAACA...TGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCAGCTCTTAAGGATCTaGTCTTTGTTTCAGATTGTT +
Preference number: 4 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGQLLRI*SLFQIV
Trigger: AACAATCTGAAACAAAGATCAGATCCTTAAGAGCTG...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACAGCAGCAAACCTTGTTaGCTCTCGGACGCACAGGAT +
Preference number: 4 (lower is better)
Translates to: TENPAGPYGQRTDKELIDSSKPC*LSDAQD
Trigger: ATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCT...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGAAGCAGCAAACCTTGTTaGCTCTCGGACGCACAGGAT +
Preference number: 4 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGSSKPC*LSDAQD
Trigger: ATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCT...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TTTTCTTCCTCCTTAACCAAGTTGAGAACACTGTCTGGTAGCCCCCTGAAGGTAAGGGGTGGTCTCCTCTaGAGACTCTGGAGTGCGGTC +
Preference number: 4 (lower is better)
Translates to: FSSSLTKLRTLSGSPLKVRGGLL*RLWSAV
Trigger: GACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCT...TACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGAAGAAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACACCCCCTTCTTTAAACTaGAGCCTGCCTTCTTGTTCC +
Preference number: 4 (lower is better)
Translates to: PIVTGITENPAGPYGQRTPPSLN*SLPSCS
Trigger: GGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGG...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTTTAGTTCTTCCACACTaGCAAGATTGCTGTTCACCA +
Preference number: 4 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPLVLPH*QDCCSP
Trigger: TGGTGAACAGCAATCTTGCCAGTGTGGAAGAACTAA...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATATCGGGGTGGGTGCTATaGTTGGTAGAATGCTGTGAG +
Preference number: 4 (lower is better)
Translates to: SLQVLQRTQQAPTGREQISGWVL*LVECCE
Trigger: CTCACAGCATTCTACCAACCATAGCACCCACCCCGA...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTCGGGGTGGGTGCTATaGTTGGTAGAATGCTGTGAG +
Preference number: 4 (lower is better)
Translates to: TENPAGPYGQRTDKELIDSGWVL*LVECCE
Trigger: CTCACAGCATTCTACCAACCATAGCACCCACCCCGA...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGATCGGGGTGGGTGCTATaGTTGGTAGAATGCTGTGAG +
Preference number: 4 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGSGWVL*LVECCE
Trigger: CTCACAGCATTCTACCAACCATAGCACCCACCCCGA...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp AGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCTTATCTTGTAGAGAAATaGTCAGCGCGAACAGGCTGC +
Preference number: 4 (lower is better)
Translates to: RYVPLRPCPTTAGTRASPYLVEK*SARTGC
Trigger: GCAGCCTGTTCGCGCTGACCATTTCTCTACAAGATA...AGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp GCACTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGTATCTTGTAGAGAAATaGTCAGCGCGAACAGGCTGC +
Preference number: 4 (lower is better)
Translates to: ALTLKTAVFVSQGWSPLQYLVEK*SARTGC
Trigger: GCAGCCTGTTCGCGCTGACCATTTCTCTACAAGATA...CTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGATTTGTTTCCCAGGGGTaGTCTCCTCTGCAGACTCTG +
Preference number: 4 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGFVSQG*SPLQTL
Trigger: CAGAGTCTGCAGAGGAGACCACCCCTGGGAAACAAA...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCTCCCGGAATATTAGGAAATTCACTTGTAGTCCCAGCTATGCAGGAGGCTGAGCCATTAATGCCTGGCTaGGAGTGGGTGGAGGCACAT +
Preference number: 4 (lower is better)
Translates to: PPGILGNSLVVPAMQEAEPLMPG*EWVEAH
Trigger: ATGTGCCTCCACCCACTCCCAGCCAGGCATTAATGG...CTCAGCCTCCTGCATAGCTGGGACTACAAGTGAATTTCCTAATATTCCGGGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp GCACTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGCTATTAGGTTCAAGCTaGGAAAAAGCCAAGGTGGGG +
Preference number: 4 (lower is better)
Translates to: ALTLKTAVFVSQGWSPLQLLGSS*EKAKVG
Trigger: CCCCACCTTGGCTTTTTCCCAGCTTGAACCTAATAG...CTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TGCAGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCAAAAGAGCTTATAGACTaGTTGCGGCTGCAAGGAGCT +
Preference number: 4 (lower is better)
Translates to: CRYVPLRPCPTTAGTRASKELID*LRLQGA
Trigger: AGCTCCTTGCAGCCGCAACCAGTCTATAAGCTCTTT...TGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp GCGTCACTGTGCAGCACATGGCTGTACTACTTCAGGAAAAGTTGTCTGGGGCTGGGCTGTGAAAGTTTTTaGAGACAAAGTCCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: ASLCSTWLYYFRKSCLGLGCESF*RQSPGP
Trigger: TGGCCCTGGACTTTGTCTTCAAAAACTTTCACAGCC...CAGCCCCAGACAACTTTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000379805.3
CDS-3UTR GCA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGAAATGTAGCATCATTTaGAAAATTACGGGATGCTAC +
Preference number: 4 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGKCSII*KITGCY
Trigger: GTAGCATCCCGTAATTTTGCAAATGATGCTACATTT...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGACCACACTGGCAAGATTaGTGTTCACCATCCTGTCCT +
Preference number: 4 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGPHWQD*CSPSCP
Trigger: AGGACAGGATGGTGAACAGCAATCTTGCCAGTGTGG...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATACCACACTGGCAAGATTaGTGTTCACCATCCTGTCCT +
Preference number: 4 (lower is better)
Translates to: SLQVLQRTQQAPTGREQIPHWQD*CSPSCP
Trigger: AGGACAGGATGGTGAACAGCAATCTTGCCAGTGTGG...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp GACCAAAGCGTCACTGTGCAGCACATGGCTGTACTACTTCAGGAAAAGTTGTCTTCGTCCTTGACTACCTaGGCTCCCACGATGCCATTG +
Preference number: 4 (lower is better)
Translates to: DQSVTVQHMAVLLQEKLSSSLTT*APTMPL
Trigger: CAATGGCATCGTGGGAGCGCAGGTAGTCAAGGACGA...AGACAACTTTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACGCTTTGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379805.3
CDS-3UTR GCA 90 bp AGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCTACACCCTTCAGCACTTaGTGGAATGGTGAAACAAAC +
Preference number: 4 (lower is better)
Translates to: RYVPLRPCPTTAGTRASPTPFST*WNGETN
Trigger: GTTTGTTTCACCATTCCAGCAAGTGCTGAAGGGTGT...AGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TTTTCTTCCTCCTTAACCAAGTTGAGAACACTGTCTGGTAGCCCCCTGAAGGTAGCAGCTCCATCAGGATaGGCCCCTTCCCAGATCTAC +
Preference number: 4 (lower is better)
Translates to: FSSSLTKLRTLSGSPLKVAAPSG*APSQIY
Trigger: GTAGATCTGGGAAGGGGCCCATCCTGATGGAGCTGC...TACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGAAGAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAACAAAAGGTGGGTCGCTaGAGTAGATGTGGTAGCCCA +
Preference number: 4 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKQKVGR*SRCGSP
Trigger: TGGGCTACCACATCTACTCCAGCGACCCACCTTTTG...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAATCGAATATCTGGCCCTaGTTAGCAGCACCATCGCCA +
Preference number: 4 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKSNIWP*LAAPSP
Trigger: TGGCGATGGTGCTGCTAACCAGGGCCAGATATTCGA...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000545074.5
CDS-3UTR CCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAAACAAACATGGAAGCTaGGACACTGCCTCAGAACTG +
Preference number: 4 (lower is better)
Translates to: PIVTGITENPAGPYGQRTNKHGS*DTASEL
Trigger: CAGTTCTGAGGCAGTGTCCCAGCTTCCATGTTTGTT...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp AGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCACCTCCCTTCAGCACTTGCTaGAATGGTGAAACAAACAAG +
Preference number: 4 (lower is better)
Translates to: RYVPLRPCPTTAGTRASPPFSTC*NGETNK
Trigger: CTTGTTTGTTTCACCATTCCAGCAAGTGCTGAAGGG...AGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TTTTCTTCCTCCTTAACCAAGTTGAGAACACTGTCTGGTAGCCCCCTGAAGGTACTCCTCTGCAGACTCTaGAGTGCGGTCTCCCAGTAC +
Preference number: 4 (lower is better)
Translates to: FSSSLTKLRTLSGSPLKVLLCRL*SAVSQY
Trigger: GTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAG...TACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGAAGAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACACTATTAGGTTCAAGCTaGGAAAAAGCCAAGGTGGGG +
Preference number: 4 (lower is better)
Translates to: PIVTGITENPAGPYGQRTLLGSS*EKAKVG
Trigger: CCCCACCTTGGCTTTTTCCCAGCTTGAACCTAATAG...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp GCACTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGCACTTGCTGGAATGGTaGAACAAACAAGGGGTATTT +
Preference number: 4 (lower is better)
Translates to: ALTLKTAVFVSQGWSPLQHLLEW*NKQGVF
Trigger: AAATACCCCTTGTTTGTTTCACCATTCCAGCAAGTG...CTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp GACCAAAGCGTCACTGTGCAGCACATGGCTGTACTACTTCAGGAAAAGTTGTCTATGCTACCAGCACTCTaGTTGCCGGCTTCTGAGAAG +
Preference number: 4 (lower is better)
Translates to: DQSVTVQHMAVLLQEKLSMLPAL*LPASEK
Trigger: CTTCTCAGAAGCCGGCAAGCAGAGTGCTGGTAGCAT...AGACAACTTTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACGCTTTGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379805.3
CDS-3UTR GCA 90 bp TGTACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTGCGCCCAGGGGCACCTaGGCTCCCACGATGCCATTG +
Preference number: 4 (lower is better)
Translates to: CTNCMQLLPAQSTHLMEVAPRGT*APTMPL
Trigger: CAATGGCATCGTGGGAGCGCAGGTGCCCCTGGGCGC...AACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000545074.5
CDS-3UTR GCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAACCACACTGGCAAGATTaGTGTTCACCATCCTGTCCT +
Preference number: 4 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKPHWQD*CSPSCP
Trigger: AGGACAGGATGGTGAACAGCAATCTTGCCAGTGTGG...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTACCAGCACTCTGCTTaGCTGCCTGGTTTTAAGAGA +
Preference number: 4 (lower is better)
Translates to: TENPAGPYGQRTDKELIDYQHSA*LPGFKR
Trigger: TCTCTTAAAACCAGGCAGGCAAGCAGAGTGCTGGTA...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379806.9
CDS-3UTR GCA 90 bp CTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATCAGCGCGAACAGGCTaGAGCACCAGCGCTGCTCGG +
Preference number: 4 (lower is better)
Translates to: LHAITTCSIYTLNGSFQESARTG*STSAAR
Trigger: CCGAGCAGCGCTGGTGCTGCAGCCTGTTCGCGCTGA...TTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TTTTCTTCCTCCTTAACCAAGTTGAGAACACTGTCTGGTAGCCCCCTGAAGGTACTGCAGACTCTGGAGTaGGGTCTCCCAGTACAGAAG +
Preference number: 4 (lower is better)
Translates to: FSSSLTKLRTLSGSPLKVLQTLE*GLPVQK
Trigger: CTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAG...TACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGAAGAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAAGGCACATGGCAAGCGTaGCTGCACGCTGGACCCACC +
Preference number: 4 (lower is better)
Translates to: LHAITTCSIYTLNGSFQEGTWQA*LHAGPT
Trigger: GGTGGGTCCAGCGTGCAGGCACGCTTGCCATGTGCC...TTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp GCACTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGAGTTTTAAGCTCTGTTaGCTTGAAGCACTGACTCTG +
Preference number: 4 (lower is better)
Translates to: ALTLKTAVFVSQGWSPLQSFKLC*LEALTL
Trigger: CAGAGTCAGTGCTTCAAGCCAACAGAGCTTAAAACT...CTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAAAGTGAGCCTTGGTTTTaGCCTCCCGGAATATTAGGA +
Preference number: 4 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKSEPWF*PPGILG
Trigger: TCCTAATATTCCGGGAGGTCAAAACCAAGGCTCACT...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAATGTTCCCGAGTCATTTaGAATAGCCAGCTCTCTGCA +
Preference number: 4 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKCSRVI*NSQLSA
Trigger: TGCAGAGAGCTGGCTATTTCAAATGACTCGGGAACA...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAACAAGTCTCCTTCAGGTaGCCCAGCAGACGCCACGCC +
Preference number: 4 (lower is better)
Translates to: LHAITTCSIYTLNGSFQEQVSFR*PSRRHA
Trigger: GGCGTGGCGTCTGCTGGGGCACCTGAAGGAGACTTG...TTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TTTTCTTCCTCCTTAACCAAGTTGAGAACACTGTCTGGTAGCCCCCTGAAGGTAGTAATCAGTGCTGGCTaGCGCTCTCTCAACAGACGT +
Preference number: 4 (lower is better)
Translates to: FSSSLTKLRTLSGSPLKVVISAG*RSLNRR
Trigger: ACGTCTGTTGAGAGAGCGGCAGCCAGCACTGATTAC...TACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGAAGAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAACTGCAGCACCAGCGCTaGTCGGGGTGGGTGCTATGG +
Preference number: 4 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQLQHQR*SGWVLW
Trigger: CCATAGCACCCACCCCGAGCAGCGCTGGTGCTGCAG...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TGTACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTCTGCAGCACCAGCGCTaGTCGGGGTGGGTGCTATGG +
Preference number: 4 (lower is better)
Translates to: CTNCMQLLPAQSTHLMEVLQHQR*SGWVLW
Trigger: CCATAGCACCCACCCCGAGCAGCGCTGGTGCTGCAG...AACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAATATCTTGTAGAGAAATaGTCAGCGCGAACAGGCTGC +
Preference number: 4 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKYLVEK*SARTGC
Trigger: GCAGCCTGTTCGCGCTGACCATTTCTCTACAAGATA...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TTTTCTTCCTCCTTAACCAAGTTGAGAACACTGTCTGGTAGCCCCCTGAAGGTATTTGTTTCCCAGGGGTaGTCTCCTCTGCAGACTCTG +
Preference number: 4 (lower is better)
Translates to: FSSSLTKLRTLSGSPLKVFVSQG*SPLQTL
Trigger: CAGAGTCTGCAGAGGAGACCACCCCTGGGAAACAAA...TACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGAAGAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAACTATTAGGTTCAAGCTaGGAAAAAGCCAAGGTGGGG +
Preference number: 4 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKLLGSS*EKAKVG
Trigger: CCCCACCTTGGCTTTTTCCCAGCTTGAACCTAATAG...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCGATGGTCTGTGGGGTTaGTGCCGGCCTCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFDGLWG*CRPPGP
Trigger: TGGGCCTGGAGGCCGGCATCAACCCCACAGACCATC...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp CTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAACCATGTCTCGGCTTCTaGGAAGCGCCAGACAGCACG +
Preference number: 4 (lower is better)
Translates to: LHAITTCSIYTLNGSFQEPCLGF*EAPDST
Trigger: CGTGCTGTCTGGCGCTTCTCAGAAGCCGAGACATGG...TTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379806.9
CDS-3UTR TCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACCACTTGCTGGAATGGTaGAACAAACAAGGGGTATTT +
Preference number: 4 (lower is better)
Translates to: TENPAGPYGQRTDKELIDHLLEW*NKQGVF
Trigger: AAATACCCCTTGTTTGTTTCACCATTCCAGCAAGTG...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp GCACTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGCAGCTCTTAAGGATCTaGTCTTTGTTTCAGATTGTT +
Preference number: 4 (lower is better)
Translates to: ALTLKTAVFVSQGWSPLQQLLRI*SLFQIV
Trigger: AACAATCTGAAACAAAGATCAGATCCTTAAGAGCTG...CTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACGAGGCACGACGCGGGTaGCCCCAAGTCTCCTTCAGG +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYEARRG*PQVSFR
Trigger: CCTGAAGGAGACTTGGGGGCACCCGCGTCGTGCCTC...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCGAGGCACGACGCGGGTaGCCCCAAGTCTCCTTCAGG +
Preference number: 4 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFEARRG*PQVSFR
Trigger: CCTGAAGGAGACTTGGGGGCACCCGCGTCGTGCCTC...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAACCTGCGCTCCCACGATaGCATTGCCCCCGTAGAAGT +
Preference number: 4 (lower is better)
Translates to: LHAITTCSIYTLNGSFQEPALPR*HCPRRS
Trigger: ACTTCTACGGGGGCAATGGCATCGTGGGAGCGCAGG...TTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAACAAGTCTCCTTCAGGTaGCCCAGCAGACGCCACGCC +
Preference number: 4 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQQVSFR*PSRRHA
Trigger: GGCGTGGCGTCTGCTGGGGCACCTGAAGGAGACTTG...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACCTGCAGCACCAGCGCTaGTCGGGGTGGGTGCTATGG +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYLQHQR*SGWVLW
Trigger: CCATAGCACCCACCCCGAGCAGCGCTGGTGCTGCAG...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TTTTCTTCCTCCTTAACCAAGTTGAGAACACTGTCTGGTAGCCCCCTGAAGGTATGGAAGCTGGGACACTaGCTCAGAACTGGTATGGTA +
Preference number: 4 (lower is better)
Translates to: FSSSLTKLRTLSGSPLKVWKLGH*LRTGMV
Trigger: TACCATACCAGTTCTGAGGCAGTGTCCCAGCTTCCA...TACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGAAGAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACGGCACATGGCAAGCGTaGCTGCACGCTGGACCCACC +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYGTWQA*LHAGPT
Trigger: GGTGGGTCCAGCGTGCAGGCACGCTTGCCATGTGCC...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAACTGTTGTTACACAGCTaGTCAGCTCTTAAGGATCTG +
Preference number: 4 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKLLLHS*SALKDL
Trigger: CAGATCCTTAAGAGCTGAGCAGCTGTGTAACAACAG...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGATTAGTTCTTCCACACTaGCAAGATTGCTGTTCACCA +
Preference number: 4 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGLVLPH*QDCCSP
Trigger: TGGTGAACAGCAATCTTGCCAGTGTGGAAGAACTAA...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAACCCTTCAGCACTTGCTaGAATGGTGAAACAAACAAG +
Preference number: 4 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKPFSTC*NGETNK
Trigger: CTTGTTTGTTTCACCATTCCAGCAAGTGCTGAAGGG...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACAGTTTTAAGCTCTGTTaGCTTGAAGCACTGACTCTG +
Preference number: 4 (lower is better)
Translates to: TENPAGPYGQRTDKELIDSFKLC*LEALTL
Trigger: CAGAGTCAGTGCTTCAAGCCAACAGAGCTTAAAACT...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAACCTGCCATTAATGCCTaGCTGGGAGTGGGTGGAGGC +
Preference number: 4 (lower is better)
Translates to: LHAITTCSIYTLNGSFQEPAINA*LGVGGG
Trigger: GCCTCCACCCACTCCCAGCCAGGCATTAATGGCAGG...TTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp TACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCGAGCATCTTCCTCATaGAGCACAGGCAGTGGCGGC +
Preference number: 4 (lower is better)
Translates to: YKLHAITTCSIYTLNGSFRASSS*STGSGG
Trigger: GCCGCCACTGCCTGTGCTTCATGAGGAAGATGCTCG...GAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAACGAGCATCTTCCTCATaGAGCACAGGCAGTGGCGGC +
Preference number: 4 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQRASSS*STGSGG
Trigger: GCCGCCACTGCCTGTGCTTCATGAGGAAGATGCTCG...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp TGTACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTGGTGGGAGGACTGCTTaGGCCTGGAGATGGAGACCA +
Preference number: 4 (lower is better)
Translates to: CTNCMQLLPAQSTHLMEVGGRTA*AWRWRP
Trigger: TGGTCTCCATCTCCAGGCTCAAGCAGTCCTCCCACC...AACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379806.9
CDS-3UTR TCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACACGTCACCTCCATATGTaGGGAGAATGTTTTTATTTT +
Preference number: 4 (lower is better)
Translates to: PIVTGITENPAGPYGQRTRHLHM*GECFYF
Trigger: AAAATAAAAACATTCTCCTCACATATGGAGGTGACG...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TGCAGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCAAAATGTAGCATCATTTaGAAAATTACGGGATGCTAC +
Preference number: 4 (lower is better)
Translates to: CRYVPLRPCPTTAGTRASKCSII*KITGCY
Trigger: GTAGCATCCCGTAATTTTGCAAATGATGCTACATTT...TGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CAAAGCGTCACTGTGCAGCACATGGCTGTACTACTTCAGGAAAAGTTGTCTGGGGTCCAACATCATATATaGGACATTGACCAAAGCGTC +
Preference number: 4 (lower is better)
Translates to: QSVTVQHMAVLLQEKLSGVQHHI*DIDQSV
Trigger: GACGCTTTGGTCAATGTCGCATATATGATGTTGGAC...CCCAGACAACTTTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACGCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379805.3
CDS-3UTR GCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACCAAGTCTCCTTCAGGTaGCCCAGCAGACGCCACGCC +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYQVSFR*PSRRHA
Trigger: GGCGTGGCGTCTGCTGGGGCACCTGAAGGAGACTTG...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TGTACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTAGGGGTGGTCTCCTCTaGAGACTCTGGAGTGCGGTC +
Preference number: 4 (lower is better)
Translates to: CTNCMQLLPAQSTHLMEVRGGLL*RLWSAV
Trigger: GACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCT...AACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCAGGGGTGGTCTCCTCTaGAGACTCTGGAGTGCGGTC +
Preference number: 4 (lower is better)
Translates to: YKLHAITTCSIYTLNGSFRGGLL*RLWSAV
Trigger: GACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCT...GAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CCTCCCGGAATATTAGGAAATTCACTTGTAGTCCCAGCTATGCAGGAGGCTGAGTTAGTTCTTCCACACTaGCAAGATTGCTGTTCACCA +
Preference number: 4 (lower is better)
Translates to: PPGILGNSLVVPAMQEAELVLPH*QDCCSP
Trigger: TGGTGAACAGCAATCTTGCCAGTGTGGAAGAACTAA...CTCAGCCTCCTGCATAGCTGGGACTACAAGTGAATTTCCTAATATTCCGGGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAGCTCTTCCAAAGGTaGCTCAGGATCGGCCGTGGC +
Preference number: 4 (lower is better)
Translates to: YKLHAITTCSIYTLNGSFQLFQR*LRIGRG
Trigger: GCCACGGCCGATCCTGAGCCACCTTTGGAAGAGCTG...GAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TGTACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTCAGCTCTTCCAAAGGTaGCTCAGGATCGGCCGTGGC +
Preference number: 4 (lower is better)
Translates to: CTNCMQLLPAQSTHLMEVQLFQR*LRIGRG
Trigger: GCCACGGCCGATCCTGAGCCACCTTTGGAAGAGCTG...AACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TTTTCTTCCTCCTTAACCAAGTTGAGAACACTGTCTGGTAGCCCCCTGAAGGTAAACAAACATGGAAGCTaGGACACTGCCTCAGAACTG +
Preference number: 4 (lower is better)
Translates to: FSSSLTKLRTLSGSPLKVNKHGS*DTASEL
Trigger: CAGTTCTGAGGCAGTGTCCCAGCTTCCATGTTTGTT...TACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGAAGAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp CTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAACTCCTCTGCAGACTCTaGAGTGCGGTCTCCCAGTAC +
Preference number: 4 (lower is better)
Translates to: LHAITTCSIYTLNGSFQELLCRL*SAVSQY
Trigger: GTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAG...TTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp GACCAAAGCGTCACTGTGCAGCACATGGCTGTACTACTTCAGGAAAAGTTGTCTAGTTGTCTGGGGCTGTaGAAGTTTTTGAAGACAAAG +
Preference number: 4 (lower is better)
Translates to: DQSVTVQHMAVLLQEKLSSCLGL*KFLKTK
Trigger: CTTTGTCTTCAAAAACTTTCACAGCCCCAGACAACT...AGACAACTTTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACGCTTTGGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000379805.3
CDS-3UTR TCA 90 bp TACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCGTGTGGAGGCTGCAGTaGGCCATGATCACACCACTG +
Preference number: 4 (lower is better)
Translates to: YKLHAITTCSIYTLNGSFVWRLQ*AMITPL
Trigger: CAGTGGTGTGATCATGGCTCACTGCAGCCTCCACAC...GAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGACGTCACCTCCATATGTaGGGAGAATGTTTTTATTTT +
Preference number: 4 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGRHLHM*GECFYF
Trigger: AAAATAAAAACATTCTCCTCACATATGGAGGTGACG...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCCCTGCGCTCCCACGATaGCATTGCCCCCGTAGAAGT +
Preference number: 4 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFPALPR*HCPRRS
Trigger: ACTTCTACGGGGGCAATGGCATCGTGGGAGCGCAGG...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACCCTGCGCTCCCACGATaGCATTGCCCCCGTAGAAGT +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYPALPR*HCPRRS
Trigger: ACTTCTACGGGGGCAATGGCATCGTGGGAGCGCAGG...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAACTATGGTTGGTAGAATaGTGTGAGGGGCCCCGCCAT +
Preference number: 4 (lower is better)
Translates to: LHAITTCSIYTLNGSFQELWLVE*CEGPRH
Trigger: ATGGCGGGGCCCCTCACAGCATTCTACCAACCATAG...TTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAACAAAGAAATTCTTATaGTGTTGTTACACAGCTGCT +
Preference number: 4 (lower is better)
Translates to: PIVTGITENPAGPYGQRTTKKFL*CCYTAA
Trigger: AGCAGCTGTGTAACAACAGCATAAGAATTTCTTTGT...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAATCGGCCGTGGCAAACTaGGCAGCATCCTCAATCTCC +
Preference number: 4 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQSAVAN*AASSIS
Trigger: GGAGATTGAGGATGCTGCCCAGTTTGCCACGGCCGA...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCTCGGCCGTGGCAAACTaGGCAGCATCCTCAATCTCC +
Preference number: 4 (lower is better)
Translates to: YKLHAITTCSIYTLNGSFSAVAN*AASSIS
Trigger: GGAGATTGAGGATGCTGCCCAGTTTGCCACGGCCGA...GAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
3UTR CAA 72 bp TACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTaGCGGCTGCAAGGAGCTGATGCAAAGACAATTGAA +
Preference number: 4 (lower is better)
Translates to: YGQRTDKELIDW*RLQGADAKTIE
Trigger: TTCAATTGTCTTTGCATCAGCTCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCAGTCGCACCGCGGCGTaGCAGAGTCGTAATAACGTC +
Preference number: 4 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFSRTAA*QSRNNV
Trigger: GACGTTATTACGACTCTGTCACGCCGCGGTGCGACT...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000379806.9
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CGTCACTGTGCAGCACATGGCTGTACTACTTCAGGAAAAGTTGTCTGGGGCTGTAAATGTAGCATCATTTaGAAAATTACGGGATGCTAC +
Preference number: 4 (lower is better)
Translates to: RHCAAHGCTTSGKVVWGCKCSII*KITGCY
Trigger: GTAGCATCCCGTAATTTTGCAAATGATGCTACATTT...ACAGCCCCAGACAACTTTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000379805.3
CDS-3UTR GCA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAATGTAGCATCATTTaGAAAATTACGGGATGCTAC +
Preference number: 4 (lower is better)
Translates to: SLQVLQRTQQAPTGREQIKCSII*KITGCY
Trigger: GTAGCATCCCGTAATTTTGCAAATGATGCTACATTT...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGAAATGTACAAACTGCATaGAATTACTACCTGCTCAAT +
Preference number: 4 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGNVQTA*NYYLLN
Trigger: ATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATT...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACGCAGCTCCATCAGGATaGGCCCCTTCCCAGATCTAC +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYAAPSG*APSQIY
Trigger: GTAGATCTGGGAAGGGGCCCATCCTGATGGAGCTGC...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCGCAGCTCCATCAGGATaGGCCCCTTCCCAGATCTAC +
Preference number: 4 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFAAPSG*APSQIY
Trigger: GTAGATCTGGGAAGGGGCCCATCCTGATGGAGCTGC...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TGTACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTCAATCAGCTAAGCTGTaGCAGAGTGTCCCACCACGC +
Preference number: 4 (lower is better)
Translates to: CTNCMQLLPAQSTHLMEVQSAKL*QSVPPR
Trigger: GCGTGGTGGGACACTCTGCCACAGCTTAGCTGATTG...AACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TGTACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTCCATTAATGCCTGGCTaGGAGTGGGTGGAGGCACAT +
Preference number: 4 (lower is better)
Translates to: CTNCMQLLPAQSTHLMEVPLMPG*EWVEAH
Trigger: ATGTGCCTCCACCCACTCCCAGCCAGGCATTAATGG...AACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp CTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAACTCTCAGCCCAGGAATaGAATCGCCTCTCTTGTAGT +
Preference number: 4 (lower is better)
Translates to: LHAITTCSIYTLNGSFQELSAQE*NRLSCS
Trigger: ACTACAAGAGAGGCGATTTCATTCCTGGGCTGAGAG...TTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAATGCTACCAGCACTCTaGTTGCCGGCTTCTGAGAAG +
Preference number: 4 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQMLPAL*LPASEK
Trigger: CTTCTCAGAAGCCGGCAAGCAGAGTGCTGGTAGCAT...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCAGCAGCAAACCTTGTTaGCTCTCGGACGCACAGGAT +
Preference number: 4 (lower is better)
Translates to: YKLHAITTCSIYTLNGSFSSKPC*LSDAQD
Trigger: ATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCT...GAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAAGCAGCAAACCTTGTTaGCTCTCGGACGCACAGGAT +
Preference number: 4 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQSSKPC*LSDAQD
Trigger: ATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCT...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACCTATGGTTGGTAGAATaGTGTGAGGGGCCCCGCCAT +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYLWLVE*CEGPRH
Trigger: ATGGCGGGGCCCCTCACAGCATTCTACCAACCATAG...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAAACAAAGAAATTCTTATaGTGTTGTTACACAGCTGCT +
Preference number: 4 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKTKKFL*CCYTAA
Trigger: AGCAGCTGTGTAACAACAGCATAAGAATTTCTTTGT...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp CCTCCCGGAATATTAGGAAATTCACTTGTAGTCCCAGCTATGCAGGAGGCTGAGACAAAGAAATTCTTATaGTGTTGTTACACAGCTGCT +
Preference number: 4 (lower is better)
Translates to: PPGILGNSLVVPAMQEAETKKFL*CCYTAA
Trigger: AGCAGCTGTGTAACAACAGCATAAGAATTTCTTTGT...CTCAGCCTCCTGCATAGCTGGGACTACAAGTGAATTTCCTAATATTCCGGGAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAACAAAAGGTGGGTCGCTaGAGTAGATGTGGTAGCCCA +
Preference number: 4 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQQKVGR*SRCGSP
Trigger: TGGGCTACCACATCTACTCCAGCGACCCACCTTTTG...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TGTACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTCAAAAGGTGGGTCGCTaGAGTAGATGTGGTAGCCCA +
Preference number: 4 (lower is better)
Translates to: CTNCMQLLPAQSTHLMEVQKVGR*SRCGSP
Trigger: TGGGCTACCACATCTACTCCAGCGACCCACCTTTTG...AACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACCAATCAGCTAAGCTGTaGCAGAGTGTCCCACCACGC +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYQSAKL*QSVPPR
Trigger: GCGTGGTGGGACACTCTGCCACAGCTTAGCTGATTG...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAATTTGTTTCCCAGGGGTaGTCTCCTCTGCAGACTCTG +
Preference number: 4 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQFVSQG*SPLQTL
Trigger: CAGAGTCTGCAGAGGAGACCACCCCTGGGAAACAAA...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACCCATTAATGCCTGGCTaGGAGTGGGTGGAGGCACAT +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYPLMPG*EWVEAH
Trigger: ATGTGCCTCCACCCACTCCCAGCCAGGCATTAATGG...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp CTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAAAGTGAGCCTTGGTTTTaGCCTCCCGGAATATTAGGA +
Preference number: 4 (lower is better)
Translates to: LHAITTCSIYTLNGSFQESEPWF*PPGILG
Trigger: TCCTAATATTCCGGGAGGTCAAAACCAAGGCTCACT...TTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAACCACACTGGCAAGATTaGTGTTCACCATCCTGTCCT +
Preference number: 4 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQPHWQD*CSPSCP
Trigger: AGGACAGGATGGTGAACAGCAATCTTGCCAGTGTGG...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCGTAATCAGTGCTGGCTaGCGCTCTCTCAACAGACGT +
Preference number: 4 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFVISAG*RSLNRR
Trigger: ACGTCTGTTGAGAGAGCGGCAGCCAGCACTGATTAC...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAATGGAAGCTGGGACACTaGCTCAGAACTGGTATGGTA +
Preference number: 4 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQWKLGH*LRTGMV
Trigger: TACCATACCAGTTCTGAGGCAGTGTCCCAGCTTCCA...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACCTCTCAGCCCAGGAATaGAATCGCCTCTCTTGTAGT +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYLSAQE*NRLSCS
Trigger: ACTACAAGAGAGGCGATTTCATTCCTGGGCTGAGAG...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp TACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCAGTGAGCCTTGGTTTTaGCCTCCCGGAATATTAGGA +
Preference number: 4 (lower is better)
Translates to: YKLHAITTCSIYTLNGSFSEPWF*PPGILG
Trigger: TCCTAATATTCCGGGAGGTCAAAACCAAGGCTCACT...GAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TTTTCTTCCTCCTTAACCAAGTTGAGAACACTGTCTGGTAGCCCCCTGAAGGTAAATGTACAAACTGCATaGAATTACTACCTGCTCAAT +
Preference number: 4 (lower is better)
Translates to: FSSSLTKLRTLSGSPLKVNVQTA*NYYLLN
Trigger: ATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATT...TACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGAAGAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAAAAGAGCTTATAGACTaGTTGCGGCTGCAAGGAGCT +
Preference number: 4 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQKELID*LRLQGA
Trigger: AGCTCCTTGCAGCCGCAACCAGTCTATAAGCTCTTT...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACAGTGAGCCTTGGTTTTaGCCTCCCGGAATATTAGGA +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYSEPWF*PPGILG
Trigger: TCCTAATATTCCGGGAGGTCAAAACCAAGGCTCACT...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp TGTACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTACCAAAGACAAGGCTTaGTACCAATCAGCTAAGCTG +
Preference number: 4 (lower is better)
Translates to: CTNCMQLLPAQSTHLMEVTKDKA*YQSAKL
Trigger: CAGCTTAGCTGATTGGTATCAAGCCTTGTCTTTGGT...AACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCTGTTCCCGAGTCATTTaGAATAGCCAGCTCTCTGCA +
Preference number: 4 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFCSRVI*NSQLSA
Trigger: TGCAGAGAGCTGGCTATTTCAAATGACTCGGGAACA...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TGTACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTCCCTTCAGCACTTGCTaGAATGGTGAAACAAACAAG +
Preference number: 4 (lower is better)
Translates to: CTNCMQLLPAQSTHLMEVPFSTC*NGETNK
Trigger: CTTGTTTGTTTCACCATTCCAGCAAGTGCTGAAGGG...AACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCAAAGAGCTTATAGACTaGTTGCGGCTGCAAGGAGCT +
Preference number: 4 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFKELID*LRLQGA
Trigger: AGCTCCTTGCAGCCGCAACCAGTCTATAAGCTCTTT...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACACCAAAGACAAGGCTTaGTACCAATCAGCTAAGCTG +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYTKDKA*YQSAKL
Trigger: CAGCTTAGCTGATTGGTATCAAGCCTTGTCTTTGGT...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACCTGTTGTTACACAGCTaGTCAGCTCTTAAGGATCTG +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYLLLHS*SALKDL
Trigger: CAGATCCTTAAGAGCTGAGCAGCTGTGTAACAACAG...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACCCCTTCAGCACTTGCTaGAATGGTGAAACAAACAAG +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYPFSTC*NGETNK
Trigger: CTTGTTTGTTTCACCATTCCAGCAAGTGCTGAAGGG...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACCACTTGCTGGAATGGTaGAACAAACAAGGGGTATTT +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYHLLEW*NKQGVF
Trigger: AAATACCCCTTGTTTGTTTCACCATTCCAGCAAGTG...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCTTAGTTCTTCCACACTaGCAAGATTGCTGTTCACCA +
Preference number: 4 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFLVLPH*QDCCSP
Trigger: TGGTGAACAGCAATCTTGCCAGTGTGGAAGAACTAA...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CCA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCAGTTTTAAGCTCTGTTaGCTTGAAGCACTGACTCTG +
Preference number: 4 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFSFKLC*LEALTL
Trigger: CAGAGTCAGTGCTTCAAGCCAACAGAGCTTAAAACT...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR TCA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAACAGCTCTTAAGGATCTaGTCTTTGTTTCAGATTGTT +
Preference number: 4 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQQLLRI*SLFQIV
Trigger: AACAATCTGAAACAAAGATCAGATCCTTAAGAGCTG...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCTACTTTCACATGACCTaGTCCTGTATGAGAATGAAA +
Preference number: 4 (lower is better)
Translates to: YKLHAITTCSIYTLNGSFYFHMT*SCMRMK
Trigger: TTTCATTCTCATACAGGAGCAGGTCATGTGAAAGTA...GAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379804.1
CDS-3UTR TCA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACCGTCACCTCCATATGTaGGGAGAATGTTTTTATTTT +
Preference number: 4 (lower is better)
Translates to: SFNALMYKLHAITTCSIYRHLHM*GECFYF
Trigger: AAAATAAAAACATTCTCCTCACATATGGAGGTGACG...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCAAGCATGAATCCAACTaGCCCAAACCATTTTACTTT +
Preference number: 4 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFKHESN*PKPFYF
Trigger: AAAGTAAAATGGTTTGGGGCAGTTGGATTCATGCTT...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379804.1
CDS-3UTR GCA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAAATGTACAAACTGCATaGAATTACTACCTGCTCAAT +
Preference number: 4 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQNVQTA*NYYLLN
Trigger: ATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATT...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp TGTACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTAATGTACAAACTGCATaGAATTACTACCTGCTCAAT +
Preference number: 4 (lower is better)
Translates to: CTNCMQLLPAQSTHLMEVNVQTA*NYYLLN
Trigger: ATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATT...AACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCAAATGTAGCATCATTTaGAAAATTACGGGATGCTAC +
Preference number: 4 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFKCSII*KITGCY
Trigger: GTAGCATCCCGTAATTTTGCAAATGATGCTACATTT...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCAATGTACAAACTGCATaGAATTACTACCTGCTCAAT +
Preference number: 4 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFNVQTA*NYYLLN
Trigger: ATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATT...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR GCA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCACAAAGAAATTCTTATaGTGTTGTTACACAGCTGCT +
Preference number: 4 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFTKKFL*CCYTAA
Trigger: AGCAGCTGTGTAACAACAGCATAAGAATTTCTTTGT...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS GCA 90 bp TGGCGGCAGCGGCGACTCCTCACAACCCAGGAGGCACGACGCGGGTaGCCCCAAGTCTCCTTCAGGTGCCCCAGCAGACGCCACGCCTCA +
Preference number: 5 (lower is better)
Translates to: WRQRRLLTTQEARRG*PQVSFRCPSRRHAS
Trigger: TGAGGCGTGGCGTCTGCTGGGGCACCTGAAGGAGACTTGGGGGCACCCGCGTCGTGCCTCCTGGGTTGTGAGGAGTCGCCGCTGCCGCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000379806.9
ENST00000417819.5
ENST00000422285.7
ENST00000423505.5
ENST00000540249.5
ENST00000545074.5
CDS GCA 90 bp ACAACCCAGGAGGCACGACGCGGGTGCCCCCAAGTCTCCTTCAGGTaGCCCAGCAGACGCCACGCCTCAGTCGCACCGCGGCGTGACAGA +
Preference number: 5 (lower is better)
Translates to: TTQEARRGCPQVSFR*PSRRHASVAPRRDR
Trigger: TCTGTCACGCCGCGGTGCGACTGAGGCGTGGCGTCTGCTGGGGCACCTGAAGGAGACTTGGGGGCACCCGCGTCGTGCCTCCTGGGTTGT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000379806.9
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCCAGCAGCAAACCTTGTaGCCTCTCGGACGCACAGGA +
Preference number: 5 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGQQQTL*PLGRTG
Trigger: TCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTG...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTAGGCAGCAGCAAACCTaGTTGCCTCTCGGACGCACA +
Preference number: 5 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPRQQQT*LPLGRT
Trigger: TGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACAGATGGTCTGTGGGGTaGATGCCGGCCTCCAGGCCC +
Preference number: 5 (lower is better)
Translates to: TENPAGPYGQRTDKELIDRWSVG*MPASRP
Trigger: GGGCCTGGAGGCCGGCATCAACCCCACAGACCATCT...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp GCACTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGAGGCAGCAGCAAACCTaGTTGCCTCTCGGACGCACA +
Preference number: 5 (lower is better)
Translates to: ALTLKTAVFVSQGWSPLQRQQQT*LPLGRT
Trigger: TGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT...CTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTTCCACACTGGCAAGATaGCTGTTCACCATCCTGTCC +
Preference number: 5 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPSTLAR*LFTILS
Trigger: GGACAGGATGGTGAACAGCAATCTTGCCAGTGTGGA...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp TGCAGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTGGGACACGAGCGTCAGGGTGGGTGCTATGGTaGGTAGAATGCTGTGAGGGG +
Preference number: 5 (lower is better)
Translates to: CRYVPLRPCPTTAGTRASGWVLW*VECCEG
Trigger: CCCCTCACAGCATTCTACCAACCATAGCACCCACCC...TGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp ACTGTGCAGCACATGGCTGTACTACTTCAGGAAAAGTTGTCTGGGGCTGTGAAAAGATGGTCTGTGGGGTaGATGCCGGCCTCCAGGCCC +
Preference number: 5 (lower is better)
Translates to: TVQHMAVLLQEKLSGAVKRWSVG*MPASRP
Trigger: GGGCCTGGAGGCCGGCATCAACCCCACAGACCATCT...TTTCACAGCCCCAGACAACTTTTCCTGAAGTAGTACAGCCATGTGCTGCACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000379805.3
CDS-3UTR CAA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACACAGCAGCAAACCTTGTaGCCTCTCGGACGCACAGGA +
Preference number: 5 (lower is better)
Translates to: PIVTGITENPAGPYGQRTQQQTL*PLGRTG
Trigger: TCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTG...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAAGGCAGCAGCAAACCTaGTTGCCTCTCGGACGCACA +
Preference number: 5 (lower is better)
Translates to: PIVTGITENPAGPYGQRTRQQQT*LPLGRT
Trigger: TGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCTTCACCATCCTGTCCTaGAGAAGCATAATAGGGTCA +
Preference number: 5 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGFTILS*RSIIGS
Trigger: TGACCCTATTATGCTTCTCAAGGACAGGATGGTGAA...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACCAGCAGCAAACCTTGTaGCCTCTCGGACGCACAGGA +
Preference number: 5 (lower is better)
Translates to: TENPAGPYGQRTDKELIDQQQTL*PLGRTG
Trigger: TCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTG...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGAGGGTGGGTGCTATGGTaGGTAGAATGCTGTGAGGGG +
Preference number: 5 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGGWVLW*VECCEG
Trigger: CCCCTCACAGCATTCTACCAACCATAGCACCCACCC...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCGAAATTCTTATGCTGTaGTTACACAGCTGCTCAGCT +
Preference number: 5 (lower is better)
Translates to: QGWSPLQTLECGLPVQKGEILML*LHSCSA
Trigger: AGCTGAGCAGCTGTGTAACAACAGCATAAGAATTTC...GCCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CCTCCCGGAATATTAGGAAATTCACTTGTAGTCCCAGCTATGCAGGAGGCTGAGAGGCAGCAGCAAACCTaGTTGCCTCTCGGACGCACA +
Preference number: 5 (lower is better)
Translates to: PPGILGNSLVVPAMQEAERQQQT*LPLGRT
Trigger: TGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT...CTCAGCCTCCTGCATAGCTGGGACTACAAGTGAATTTCCTAATATTCCGGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CCTCCCGGAATATTAGGAAATTCACTTGTAGTCCCAGCTATGCAGGAGGCTGAGGGGTGGGTGCTATGGTaGGTAGAATGCTGTGAGGGG +
Preference number: 5 (lower is better)
Translates to: PPGILGNSLVVPAMQEAEGWVLW*VECCEG
Trigger: CCCCTCACAGCATTCTACCAACCATAGCACCCACCC...CTCAGCCTCCTGCATAGCTGGGACTACAAGTGAATTTCCTAATATTCCGGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CCAGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGACCACGCTACATGTTTaGTTAAAGCTTCTGTTAGTG +
Preference number: 5 (lower is better)
Translates to: PGVVSSADSGVRSPSTEGTTLHV*LKLLLV
Trigger: CACTAACAGAAGCTTTAACAAAACATGTAGCGTGGT...CCCTTCTGTACTGGGAGACCGCACTCCAGAGTCTGCAGAGGAGACCACCCCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp GCACTGACTCTGAAGACAGCTGTGTTTGTTTCCCAGGGGTGGTCTCCTCTGCAGCTGCAGCCTGCCTTCTaGTTCCCGAGTCATTTGAAA +
Preference number: 5 (lower is better)
Translates to: ALTLKTAVFVSQGWSPLQLQPAF*FPSHLK
Trigger: TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAG...CTGCAGAGGAGACCACCCCTGGGAAACAAACACAGCTGTCTTCAGAGTCAGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACACTGCAGCCTGCCTTCTaGTTCCCGAGTCATTTGAAA +
Preference number: 5 (lower is better)
Translates to: PIVTGITENPAGPYGQRTLQPAF*FPSHLK
Trigger: TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAG...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGAGAGCTTATAGACTGGTaGCGGCTGCAAGGAGCTGAT +
Preference number: 5 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGELIDW*RLQGAD
Trigger: ATCAGCTCCTTGCAGCCGCAACCAGTCTATAAGCTC...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp TTTTCTTCCTCCTTAACCAAGTTGAGAACACTGTCTGGTAGCCCCCTGAAGGTACAGCAGCAAACCTTGTaGCCTCTCGGACGCACAGGA +
Preference number: 5 (lower is better)
Translates to: FSSSLTKLRTLSGSPLKVQQQTL*PLGRTG
Trigger: TCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTG...TACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGAAGAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAATCCACACTGGCAAGATaGCTGTTCACCATCCTGTCC +
Preference number: 5 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKSTLAR*LFTILS
Trigger: GGACAGGATGGTGAACAGCAATCTTGCCAGTGTGGA...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp TTGACCAAAGCGTCACTGTGCAGCACATGGCTGTACTACTTCAGGAAAAGTTGTACACAATCCTCGTCCTaGACTACCTGCGCTCCCACG +
Preference number: 5 (lower is better)
Translates to: LTKASLCSTWLYYFRKSCTQSSS*TTCAPT
Trigger: CGTGGGAGCGCAGGTAGTCAAGGACGAGGATTGTGT...ACAACTTTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACGCTTTGGTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379805.3
CDS-3UTR CAA 90 bp ACATGGCAAGCGTGCCTGCACGCTGGACCCACCCCCTTCTTTAAACTGCAGCCTACCACGCTACATGTTTaGTTAAAGCTTCTGTTAGTG +
Preference number: 5 (lower is better)
Translates to: TWQACLHAGPTPFFKLQPTTLHV*LKLLLV
Trigger: CACTAACAGAAGCTTTAACAAAACATGTAGCGTGGT...AGGCTGCAGTTTAAAGAAGGGGGTGGGTCCAGCGTGCAGGCACGCTTGCCATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp ACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACCTGCAGCCTGCCTTCTaGTTCCCGAGTCATTTGAAA +
Preference number: 5 (lower is better)
Translates to: TENPAGPYGQRTDKELIDLQPAF*FPSHLK
Trigger: TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAG...GTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CCTCCCGGAATATTAGGAAATTCACTTGTAGTCCCAGCTATGCAGGAGGCTGAGGAGCTTATAGACTGGTaGCGGCTGCAAGGAGCTGAT +
Preference number: 5 (lower is better)
Translates to: PPGILGNSLVVPAMQEAEELIDW*RLQGAD
Trigger: ATCAGCTCCTTGCAGCCGCAACCAGTCTATAAGCTC...CTCAGCCTCCTGCATAGCTGGGACTACAAGTGAATTTCCTAATATTCCGGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAAGAGCTTATAGACTGGTaGCGGCTGCAAGGAGCTGAT +
Preference number: 5 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKELIDW*RLQGAD
Trigger: ATCAGCTCCTTGCAGCCGCAACCAGTCTATAAGCTC...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAAAGATGGTCTGTGGGGTaGATGCCGGCCTCCAGGCCC +
Preference number: 5 (lower is better)
Translates to: LHAITTCSIYTLNGSFQERWSVG*MPASRP
Trigger: GGGCCTGGAGGCCGGCATCAACCCCACAGACCATCT...TTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp TCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGATATCCTCCTTAACCAAGTaGAGAACACTGTCTGGTAGC +
Preference number: 5 (lower is better)
Translates to: SLQVLQRTQQAPTGREQISSLTK*RTLSGS
Trigger: GCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGA...TATCTGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGATCCTCCTTAACCAAGTaGAGAACACTGTCTGGTAGC +
Preference number: 5 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGSSLTK*RTLSGS
Trigger: GCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGA...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS CCA 90 bp AGCTCTCTGCAGGTACGTACCTCTAAGGCCATGTCCTACTACTGCTaGGACACGAGCGTCACCTCCATATGTGAGGAGAATGTTTTTATT +
Preference number: 5 (lower is better)
Translates to: SSLQVRTSKAMSYYC*DTSVTSICEENVFI
Trigger: AATAAAAACATTCTCCTCACATATGGAGGTGACGCTCGTGTCCCAGCAGTAGTAGGACATGGCCTTAGAGGTACGTACCTGCAGAGAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp TACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCAGATGGTCTGTGGGGTaGATGCCGGCCTCCAGGCCC +
Preference number: 5 (lower is better)
Translates to: YKLHAITTCSIYTLNGSFRWSVG*MPASRP
Trigger: GGGCCTGGAGGCCGGCATCAACCCCACAGACCATCT...GAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAAGATGGTCTGTGGGGTaGATGCCGGCCTCCAGGCCC +
Preference number: 5 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQRWSVG*MPASRP
Trigger: GGGCCTGGAGGCCGGCATCAACCCCACAGACCATCT...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CCCTACGGGCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGATTCACCATCCTGTCCTaGAGAAGCATAATAGGGTCA +
Preference number: 5 (lower is better)
Translates to: PYGQRTDKELIDWLRLQGFTILS*RSIIGS
Trigger: TGACCCTATTATGCTTCTCAAGGACAGGATGGTGAA...TCCTTGCAGCCGCAACCAGTCTATAAGCTCTTTATCTGTTCTCTGCCCGTAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp TTTTCTTCCTCCTTAACCAAGTTGAGAACACTGTCTGGTAGCCCCCTGAAGGTATCCACACTGGCAAGATaGCTGTTCACCATCCTGTCC +
Preference number: 5 (lower is better)
Translates to: FSSSLTKLRTLSGSPLKVSTLAR*LFTILS
Trigger: GGACAGGATGGTGAACAGCAATCTTGCCAGTGTGGA...TACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGAAGAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CGTCACTGTGCAGCACATGGCTGTACTACTTCAGGAAAAGTTGTCTGGGGCTGTCTACTTCAGGAAAAGTaGTCTGGGGCTGTGAAAGTT +
Preference number: 5 (lower is better)
Translates to: RHCAAHGCTTSGKVVWGCLLQEK*SGAVKV
Trigger: AACTTTCACAGCCCCAGACAACTTTTCCTGAAGTAG...ACAGCCCCAGACAACTTTTCCTGAAGTAGTACAGCCATGTGCTGCACAGTGACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000379805.3
CDS-3UTR CAA 90 bp CCAATCGTTACAGGTATTACAGAGAACCCAGCAGGCCCCTACGGGCAGAGAACAGAAATTCTTATGCTGTaGTTACACAGCTGCTCAGCT +
Preference number: 5 (lower is better)
Translates to: PIVTGITENPAGPYGQRTEILML*LHSCSA
Trigger: AGCTGAGCAGCTGTGTAACAACAGCATAAGAATTTC...TGTTCTCTGCCCGTAGGGGCCTGCTGGGTTCTCTGTAATACCTGTAACGATTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CCTCCCGGAATATTAGGAAATTCACTTGTAGTCCCAGCTATGCAGGAGGCTGAGTTCACCATCCTGTCCTaGAGAAGCATAATAGGGTCA +
Preference number: 5 (lower is better)
Translates to: PPGILGNSLVVPAMQEAEFTILS*RSIIGS
Trigger: TGACCCTATTATGCTTCTCAAGGACAGGATGGTGAA...CTCAGCCTCCTGCATAGCTGGGACTACAAGTGAATTTCCTAATATTCCGGGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS TCA 90 bp ACCAACTCTACAAAGCAAACCAAACCGCACCCCAAATATGTACTCTaGGGCTCAACCATTAGAACACAGAGGCCAGTTCAGTCGTCTAAG +
Preference number: 5 (lower is better)
Translates to: TNSTKQTKPHPKYVL*GSTIRTQRPVQSSK
Trigger: CTTAGACGACTGAACTGGCCTCTGTGTTCTAATGGTTGAGCCTCAGAGTACATATTTGGGGTGCGGTTTGGTTTGCTTTGTAGAGTTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000479146.1
CDS-3UTR CAA 90 bp TTTTCTTCCTCCTTAACCAAGTTGAGAACACTGTCTGGTAGCCCCCTGAAGGTATCCTCCTTAACCAAGTaGAGAACACTGTCTGGTAGC +
Preference number: 5 (lower is better)
Translates to: FSSSLTKLRTLSGSPLKVSSLTK*RTLSGS
Trigger: GCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGA...TACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGAAGAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp TGTACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTCAGCAGCAAACCTTGTaGCCTCTCGGACGCACAGGA +
Preference number: 5 (lower is better)
Translates to: CTNCMQLLPAQSTHLMEVQQQTL*PLGRTG
Trigger: TCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTG...AACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp TTTTCTTCCTCCTTAACCAAGTTGAGAACACTGTCTGGTAGCCCCCTGAAGGTATTCACCATCCTGTCCTaGAGAAGCATAATAGGGTCA +
Preference number: 5 (lower is better)
Translates to: FSSSLTKLRTLSGSPLKVFTILS*RSIIGS
Trigger: TGACCCTATTATGCTTCTCAAGGACAGGATGGTGAA...TACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGAAGAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CCTCCCGGAATATTAGGAAATTCACTTGTAGTCCCAGCTATGCAGGAGGCTGAGACCACGCTACATGTTTaGTTAAAGCTTCTGTTAGTG +
Preference number: 5 (lower is better)
Translates to: PPGILGNSLVVPAMQEAETTLHV*LKLLLV
Trigger: CACTAACAGAAGCTTTAACAAAACATGTAGCGTGGT...CTCAGCCTCCTGCATAGCTGGGACTACAAGTGAATTTCCTAATATTCCGGGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACAGGCAGCAGCAAACCTaGTTGCCTCTCGGACGCACA +
Preference number: 5 (lower is better)
Translates to: SFNALMYKLHAITTCSIYRQQQT*LPLGRT
Trigger: TGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACGGGTGGGTGCTATGGTaGGTAGAATGCTGTGAGGGG +
Preference number: 5 (lower is better)
Translates to: SFNALMYKLHAITTCSIYGWVLW*VECCEG
Trigger: CCCCTCACAGCATTCTACCAACCATAGCACCCACCC...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp CCCACCCCCTTCTTTAAACTGCAGCCTGCCTTCTTGTTCCCGAGTCATTTGAAAGATCTTTGTTTCAGATaGTTGAAGAGGGTTATACAC +
Preference number: 5 (lower is better)
Translates to: PTPFFKLQPAFLFPSHLKDLCFR*LKRVIH
Trigger: GTGTATAACCCTCTTCAACAATCTGAAACAAAGATC...TTTCAAATGACTCGGGAACAAGAAGGCAGGCTGCAGTTTAAAGAAGGGGGTGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp TGTACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTGAGCTTATAGACTGGTaGCGGCTGCAAGGAGCTGAT +
Preference number: 5 (lower is better)
Translates to: CTNCMQLLPAQSTHLMEVELIDW*RLQGAD
Trigger: ATCAGCTCCTTGCAGCCGCAACCAGTCTATAAGCTC...AACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp ATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGAATTTCTCCACACTGGCAAGATaGCTGTTCACCATCCTGTCC +
Preference number: 5 (lower is better)
Translates to: MQLLPAQSTHLMEVSKNFSTLAR*LFTILS
Trigger: GGACAGGATGGTGAACAGCAATCTTGCCAGTGTGGA...GAAATTCTTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp TACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCTCCTCCTTAACCAAGTaGAGAACACTGTCTGGTAGC +
Preference number: 5 (lower is better)
Translates to: YKLHAITTCSIYTLNGSFSSLTK*RTLSGS
Trigger: GCTACCAGACAGTGTTCTCAACTTGGTTAAGGAGGA...GAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACTTCACCATCCTGTCCTaGAGAAGCATAATAGGGTCA +
Preference number: 5 (lower is better)
Translates to: SFNALMYKLHAITTCSIYFTILS*RSIIGS
Trigger: TGACCCTATTATGCTTCTCAAGGACAGGATGGTGAA...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000379804.1
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp TACAAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCGAAATTCTTATGCTGTaGTTACACAGCTGCTCAGCT +
Preference number: 5 (lower is better)
Translates to: YKLHAITTCSIYTLNGSFEILML*LHSCSA
Trigger: AGCTGAGCAGCTGTGTAACAACAGCATAAGAATTTC...GAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp TCTTTTAATGCACTAATGTACAAACTGCATGCAATTACTACCTGCTCAATCTACGAAATTCTTATGCTGTaGTTACACAGCTGCTCAGCT +
Preference number: 5 (lower is better)
Translates to: SFNALMYKLHAITTCSIYEILML*LHSCSA
Trigger: AGCTGAGCAGCTGTGTAACAACAGCATAAGAATTTC...GTAGATTGAGCAGGTAGTAATTGCATGCAGTTTGTACATTAGTGCATTAAAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS-3UTR CAA 90 bp AAACTGCATGCAATTACTACCTGCTCAATCTACACACTTAATGGAAGTTTCCAAGATCTTTGTTTCAGATaGTTGAAGAGGGTTATACAC +
Preference number: 5 (lower is better)
Translates to: KLHAITTCSIYTLNGSFQDLCFR*LKRVIH
Trigger: GTGTATAACCCTCTTCAACAATCTGAAACAAAGATC...TTGGAAACTTCCATTAAGTGTGTAGATTGAGCAGGTAGTAATTGCATGCAGTTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000422285.7
ENST00000540249.5
ENST00000545074.5
CDS GCA 72 bp GAGGCACGACGCGGGTGCCCCCAAGTCTCCTTCAGGTaGCCCAGCAGACGCCACGCCTCAGTCGCACCGCGG +
Preference number: 6 (lower is better)
Translates to: EARRGCPQVSFR*PSRRHASVAPR
Trigger: CCGCGGTGCGACTGAGGCGTGGCGTCTGCTGGGGCACCTGAAGGAGACTTGGGGGCACCCGCGTCGTGCCTC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379806.9
ENST00000423505.5
ENST00000540249.5
ENST00000545074.5
CDS TCA 72 bp CTACCAGCACTCTGCTTGCCTGGGCACTTTCAAAGGTaGCTTCATATCTGGAACTCAATTTTCTTCCTACTG +
Preference number: 6 (lower is better)
Translates to: LPALCLPGHFQR*LHIWNSIFFLL
Trigger: CAGTAGGAAGAAAATTGAGTTCCAGATATGAAGTCACCTTTGAAAGTGCCCAGGCAAGCAGAGTGCTGGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000417819.5
CDS CAA 90 bp GGCCCTTTATTAAGCGTCCAGTGTAGTCTTATCAGATCTTCTGAGTaGTCACGAATTTCTTATTGGTTGACTGATCTGTTCTCATTTCTA +
Preference number: 6 (lower is better)
Translates to: GPLLSVQCSLIRSSE*SRISYWLTDLFSFL
Trigger: TAGAAATGAGAACAGATCAGTCAACCAATAAGAAATTCGTGACAACTCAGAAGATCTGATAAGACTACACTGGACGCTTAATAAAGGGCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000478795.1
CDS CAA 72 bp TTAAGCGTCCAGTGTAGTCTTATCAGATCTTCTGAGTaGTCACGAATTTCTTATTGGTTGACTGATCTGTTC +
Preference number: 6 (lower is better)
Translates to: LSVQCSLIRSSE*SRISYWLTDLF
Trigger: GAACAGATCAGTCAACCAATAAGAAATTCGTGACAACTCAGAAGATCTGATAAGACTACACTGGACGCTTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000478795.1
CDS CCA 72 bp CTTATCAGATCTTCTGAGTTGTCACGAATTTCTTATTaGTTGACTGATCTGTTCTCATTTCTAGCAAGTATT +
Preference number: 6 (lower is better)
Translates to: LIRSSELSRISY*LTDLFSFLASI
Trigger: AATACTTGCTAGAAATGAGAACAGATCAGTCAACCAATAAGAAATTCGTGACAACTCAGAAGATCTGATAAG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000478795.1