RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PDGFB (Homo sapiens)

Ensembl gene IDs: ENSG00000100311

Ensembl transcript IDs: ENST00000331163.11, ENST00000381551.8, ENST00000440375.1, ENST00000455790.5

Found 301 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGAAGGGTaGACGGACACGTGGAGGGGTGGGGGAAGCACCATTGGCCGTCCG +
Preference number: 1 (lower is better)
Translates to: ARRRRPLGGDPLMEG*TDTWRGGGSTIGRP
Trigger: CGGACGGCCAATGGTGCTTCCCCCACCCCTCCACGTGTCCGTCCACCCTTCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR GCA 90 bp GTGGTCTTAGCCATGGAGTCCGAGGCAGCCTGGCCTGCCTGGAGGTaGCTCCCCTCAGAGCTGGCCAGGGGTTCAGGGATCAGGCAGGCT +
Preference number: 1 (lower is better)
Translates to: VVLAMESEAAWPAWR*LPSELARGSGIRQA
Trigger: AGCCTGCCTGATCCCTGAACCCCTGGCCAGCTCTGAGGGGAGGCACCTCCAGGCAGGCCAGGCTGCCTCGGACTCCATGGCTAAGACCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 90 bp GTGCCCGTCTGTGGTCTTAGCCATGGAGTCCGAGGCAGCCTGGCCTaGCTGGAGGTGCCTCCCCTCAGAGCTGGCCAGGGGTTCAGGGAT +
Preference number: 1 (lower is better)
Translates to: VPVCGLSHGVRGSLA*LEVPPLRAGQGFRD
Trigger: ATCCCTGAACCCCTGGCCAGCTCTGAGGGGAGGCACCTCCAGGCAGGCCAGGCTGCCTCGGACTCCATGGCTAAGACCACAGACGGGCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CCA 90 bp AGGCCGCTGGGAGGAGACCCGCTGATGGAAGGGTGGACGGACACGTaGAGGGGTGGGGGAAGCACCATTGGCCGTCCGAATCAGGCATCG +
Preference number: 1 (lower is better)
Translates to: RPLGGDPLMEGWTDT*RGGGSTIGRPNQAS
Trigger: CGATGCCTGATTCGGACGGCCAATGGTGCTTCCCCCACCCCTCCACGTGTCCGTCCACCCTTCCATCAGCGGGTCTCCTCCCAGCGGCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR CCA 90 bp TCTGTGTGCCCGTCTGTGGTCTTAGCCATGGAGTCCGAGGCAGCCTaGCCTGCCTGGAGGTGCCTCCCCTCAGAGCTGGCCAGGGGTTCA +
Preference number: 1 (lower is better)
Translates to: SVCPSVVLAMESEAA*PAWRCLPSELARGS
Trigger: TGAACCCCTGGCCAGCTCTGAGGGGAGGCACCTCCAGGCAGGCCAGGCTGCCTCGGACTCCATGGCTAAGACCACAGACGGGCACACAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR TCA 90 bp TCCCCTCAGAGCTGGCCAGGGGTTCAGGGATCAGGCAGGCTATGCTaGGAGGTCCTCAGGGCTCCTCAGGACAGTCCACAGCGCTCAGGT +
Preference number: 1 (lower is better)
Translates to: SPQSWPGVQGSGRLC*EVLRAPQDSPQRSG
Trigger: ACCTGAGCGCTGTGGACTGTCCTGAGGAGCCCTGAGGACCTCTCAGCATAGCCTGCCTGATCCCTGAACCCCTGGCCAGCTCTGAGGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR TCA 90 bp GTATGTGCACGCCAGTGTGTGAGATCACGCCTGAGGCTCCCAGAGTaGGAGGAACACGCCGCAAGCTGTCGGCACATCCTGCCAAGGCAG +
Preference number: 1 (lower is better)
Translates to: VCARQCVRSRLRLPE*EEHAASCRHILPRQ
Trigger: CTGCCTTGGCAGGATGTGCCGACAGCTTGCGGCGTGTTCCTCTCACTCTGGGAGCCTCAGGCGTGATCTCACACACTGGCGTGCACATAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CCA 90 bp GCACAGAGGCACCAGGGAGACGAGGTGACTGGTGTTTGGGCACCGTaGGAGGGGTTTTCTCCAGTCTGTGTGCCCGTCTGTGGTCTTAGC +
Preference number: 1 (lower is better)
Translates to: AQRHQGDEVTGVWAP*EGFSPVCVPVCGLS
Trigger: GCTAAGACCACAGACGGGCACACAGACTGGAGAAAACCCCTCCCACGGTGCCCAAACACCAGTCACCTCGTCTCCCTGGTGCCTCTGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 90 bp GAAGAAGATGGCGATGGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTaGTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATG +
Preference number: 1 (lower is better)
Translates to: EEDGDGVQSFFFFLS*WARRRRPLGGDPLM
Trigger: CATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATCTTCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR CCA 90 bp CATTCCCAGCCCACGAGCTGGTTTCCTAGGAGGAGCCACCAGAGGTaGAGCTCAGAAGGATCAAAGATGGGGAAGTGTGCAAGCAGGGAG +
Preference number: 1 (lower is better)
Translates to: HSQPTSWFPRRSHQR*SSEGSKMGKCASRE
Trigger: CTCCCTGCTTGCACACTTCCCCATCTTTGATCCTTCTGAGCTCCACCTCTGGTGGCTCCTCCTAGGAAACCAGCTCGTGGGCTGGGAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 90 bp GGCTCCCAGAGTGAGAGGAACACGCCGCAAGCTGTCGGCACATCCTaGCAAGGCAGAAAGGTTAATTGTCACGCACGATGCCAACAGACA +
Preference number: 1 (lower is better)
Translates to: GSQSERNTPQAVGTS*QGRKVNCHARCQQT
Trigger: TGTCTGTTGGCATCGTGCGTGACAATTAACCTTTCTGCCTTGGCAGGATGTGCCGACAGCTTGCGGCGTGTTCCTCTCACTCTGGGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 90 bp GTCTCTTCTTCCCGCCAGACAGAGGCCTCCCCCAAGTTGCAGGCCTaGGTGTATGTGCACGCATGTGTGAGCATGTATGTGTGTGTGTGT +
Preference number: 1 (lower is better)
Translates to: VSSSRQTEASPKLQA*VYVHACVSMYVCVC
Trigger: ACACACACACACATACATGCTCACACATGCGTGCACATACACGCAGGCCTGCAACTTGGGGGAGGCCTCTGTCTGGCGGGAAGAAGAGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 90 bp CTCGTCACTGCCAGAGACACGCACAAGTCCACGTGTCAGGAGCTGTaGCAGGACCAAGACCAACAGAGTAGCCTGTGTGTCTCTTCTTCC +
Preference number: 1 (lower is better)
Translates to: LVTARDTHKSTCQEL*QDQDQQSSLCVSSS
Trigger: GGAAGAAGAGACACACAGGCTACTCTGTTGGTCTTGGTCCTGGCACAGCTCCTGACACGTGGACTTGTGCGTGTCTCTGGCAGTGACGAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CCA 90 bp TCCATCTCTAACCCACCTGAGAGGGCACCCAGCCACTTGGTGTGCTaGCCACACCCACCAAGAGGAGTCCACGTCTTCAAAACGAAAACG +
Preference number: 1 (lower is better)
Translates to: SISNPPERAPSHLVC*PHPPRGVHVFKTKT
Trigger: CGTTTTCGTTTTGAAGACGTGGACTCCTCTTGGTGGGTGTGGCCAGCACACCAAGTGGCTGGGTGCCCTCTCAGGTGGGTTAGAGATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CCA 90 bp CAGCAAACTCCATCTCTAACCCACCTGAGAGGGCACCCAGCCACTTaGTGTGCTGGCCACACCCACCAAGAGGAGTCCACGTCTTCAAAA +
Preference number: 1 (lower is better)
Translates to: QQTPSLTHLRGHPAT*CAGHTHQEESTSSK
Trigger: TTTTGAAGACGTGGACTCCTCTTGGTGGGTGTGGCCAGCACACCAAGTGGCTGGGTGCCCTCTCAGGTGGGTTAGAGATGGAGTTTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 90 bp AACTCCATCTCTAACCCACCTGAGAGGGCACCCAGCCACTTGGTGTaGTGGCCACACCCACCAAGAGGAGTCCACGTCTTCAAAACGAAA +
Preference number: 1 (lower is better)
Translates to: NSISNPPERAPSHLV*WPHPPRGVHVFKTK
Trigger: TTTCGTTTTGAAGACGTGGACTCCTCTTGGTGGGTGTGGCCAGCACACCAAGTGGCTGGGTGCCCTCTCAGGTGGGTTAGAGATGGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CCA 90 bp GCAGTACACACCCTGCACAACCTTACATGGCAGTCGTGGCTGGGTTaGAATATGATGAGCAGGTCCCTTGCTGCCCTGGCCTCTAGTCTT +
Preference number: 1 (lower is better)
Translates to: AVHTLHNLTWQSWLG*NMMSRSLAALASSL
Trigger: AAGACTAGAGGCCAGGGCAGCAAGGGACCTGCTCATCATATTCCAACCCAGCCACGACTGCCATGTAAGGTTGTGCAGGGTGTGTACTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 90 bp GTATGTGCACGCATGTGTGAGCATGTATGTGTGTGTGTGTGTATGTaGACGCCAGTGTGTGAGATCACGCCTGAGGCTCCCAGAGTGAGA +
Preference number: 1 (lower is better)
Translates to: VCARMCEHVCVCVCM*TPVCEITPEAPRVR
Trigger: TCTCACTCTGGGAGCCTCAGGCGTGATCTCACACACTGGCGTGCACATACACACACACACACATACATGCTCACACATGCGTGCACATAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 90 bp GTCGGCACATCCTGCCAAGGCAGAAAGGTTAATTGTCACGCACGATaGCAACAGACAGACCTCCGGCGGATTCATTTGGTTTTGTTTTGT +
Preference number: 1 (lower is better)
Translates to: VGTSCQGRKVNCHAR*QQTDLRRIHLVLFC
Trigger: ACAAAACAAAACCAAATGAATCCGCCGGAGGTCTGTCTGTTGGCATCGTGCGTGACAATTAACCTTTCTGCCTTGGCAGGATGTGCCGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CCA 90 bp ACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATaGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACG +
Preference number: 1 (lower is better)
Translates to: TLLSQVLGVKGRRWR*SSVLLFLLELLGKT
Trigger: CGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR CCA 90 bp TCTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATaGCGATGGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGC +
Preference number: 1 (lower is better)
Translates to: SLTLLSQVLGVKGRR*RWSSVLLFLLELLG
Trigger: GCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR GCA 90 bp ATAAATATACAAATCAGCTTTATCTATGATGTGAACAGTGCTCCCTaGATACAATGTCCTTGTGCAGTACACACCCTGCACAACCTTACA +
Preference number: 1 (lower is better)
Translates to: INIQISFIYDVNSAP*IQCPCAVHTLHNLT
Trigger: TGTAAGGTTGTGCAGGGTGTGTACTGCACAAGGACATTGTATGCAGGGAGCACTGTTCACATCATAGATAAAGCTGATTTGTATATTTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR TCA 90 bp TCTGCCAGAAATTGTCATAATAAATATACAAATCAGCTTTATCTATaGTGTGAACAGTGCTCCCTGCATACAATGTCCTTGTGCAGTACA +
Preference number: 1 (lower is better)
Translates to: SARNCHNKYTNQLYL*CEQCSLHTMSLCST
Trigger: TGTACTGCACAAGGACATTGTATGCAGGGAGCACTGTTCACATCATAGATAAAGCTGATTTGTATATTTATTATGACAATTTCTGGCAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR GCA 90 bp CCCTGCCCCTACCACAGTCTCCCTCCTATTTGGCCACTCCAAGCCACAGGCTGCGTGGCCCAGGCCAGGTaGAGGGGAAGGAGCCCGTTT +
Preference number: 2 (lower is better)
Translates to: PCPYHSLPPIWPLQATGCVAQAR*RGRSPF
Trigger: AAACGGGCTCCTTCCCCTGCACCTGGCCTGGGCCAC...GCAGCCTGTGGCTTGGAGTGGCCAAATAGGAGGGAGACTGTGGTAGGGGCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR CCA 90 bp GGGTGGCAGGAGGCAGGGGATACCCAGGTCACCATCTACAGCCACCTCAACAGCTTCTTCTTGAGCTGCTaGGCAAGACGCCGGAGGCCG +
Preference number: 2 (lower is better)
Translates to: GWQEAGDTQVTIYSHLNSFFLSC*ARRRRP
Trigger: CGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAA...GCTGTTGAGGTGGCTGTAGATGGTGACCTGGGTATCCCCTGCCTCCTGCCACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR CCA 90 bp CCGCAAGCTGTCGGCACATCCTGCCAAGGCAGAAAGGTTAATTGTCACGCACGACACAGCGCTCAGGTGTaGCCCAGGCCAGGTGCAGGG +
Preference number: 2 (lower is better)
Translates to: PQAVGTSCQGRKVNCHARHSAQV*PRPGAG
Trigger: CCCTGCACCTGGCCTGGGCCACACCTGAGCGCTGTG...TCGTGCGTGACAATTAACCTTTCTGCCTTGGCAGGATGTGCCGACAGCTTGCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR TCA 90 bp CAGAGTGAGAGGAACACGCCGCAAGCTGTCGGCACATCCTGCCAAGGCAGAAAGTCAGGCAGGCTATGCTaGGAGGTCCTCAGGGCTCCT +
Preference number: 2 (lower is better)
Translates to: QSERNTPQAVGTSCQGRKSGRLC*EVLRAP
Trigger: AGGAGCCCTGAGGACCTCTCAGCATAGCCTGCCTGA...CTTTCTGCCTTGGCAGGATGTGCCGACAGCTTGCGGCGTGTTCCTCTCACTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR CCA 90 bp CCCTGCCCCTACCACAGTCTCCCTCCTATTTGGCCACTCCAAGCCACAGGCTGCCAGTCGTGGCTGGGTTaGAATATGATGAGCAGGTCC +
Preference number: 2 (lower is better)
Translates to: PCPYHSLPPIWPLQATGCQSWLG*NMMSRS
Trigger: GGACCTGCTCATCATATTCCAACCCAGCCACGACTG...GCAGCCTGTGGCTTGGAGTGGCCAAATAGGAGGGAGACTGTGGTAGGGGCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR CCA 90 bp CCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGCCGCTGATGGAAGGGTaGACGGACACGTGGAGGGGT +
Preference number: 2 (lower is better)
Translates to: PPKSDPISLSHTLIPSSWPLMEG*TDTWRG
Trigger: ACCCCTCCACGTGTCCGTCCACCCTTCCATCAGCGG...CCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR CAA 90 bp TTAAGGGAAGAAGATGGCGATGGAGTTCAGTCCTTCTTTTTCTTCTaGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCG +
Preference number: 2 (lower is better)
Translates to: LREEDGDGVQSFFFF*SCWARRRRPLGGDP
Trigger: CGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATCTTCTTCCCTTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR CAA 90 bp ACAGCAAACTCCATCTCTAACCCACCTGAGAGGGCACCCAGCCACTaGGTGTGCTGGCCACACCCACCAAGAGGAGTCCACGTCTTCAAA +
Preference number: 2 (lower is better)
Translates to: TANSISNPPERAPSH*VCWPHPPRGVHVFK
Trigger: TTTGAAGACGTGGACTCCTCTTGGTGGGTGTGGCCAGCACACCAAGTGGCTGGGTGCCCTCTCAGGTGGGTTAGAGATGGAGTTTGCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR CCA 90 bp GGGCAGTTGCTGGAGCAGAGGACTTTGGGAAATGGAGGTCATGTGGACAGCAGTAGCCACTTGGTGTGCTaGCCACACCCACCAAGAGGA +
Preference number: 2 (lower is better)
Translates to: GQLLEQRTLGNGGHVDSSSHLVC*PHPPRG
Trigger: TCCTCTTGGTGGGTGTGGCCAGCACACCAAGTGGCT...ACTGCTGTCCACATGACCTCCATTTCCCAAAGTCCTCTGCTCCAGCAACTGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR CCA 90 bp TCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGACTCCAAGGACCCCATaGGGGCAATACAGCAAATAC +
Preference number: 2 (lower is better)
Translates to: SVLLFLLELLGKTPEAAGTPRTP*GQYSKY
Trigger: GTATTTGCTGTATTGCCCCCATGGGGTCCTTGGAGT...CCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR-3UTR GCA 90 bp CCGCAAGCTGTCGGCACATCCTGCCAAGGCAGAAAGGTTAATTGTCACGCACGATTTTTCTTCTTGAGCTaGTGGGCAAGACGCCGGAGG +
Preference number: 2 (lower is better)
Translates to: PQAVGTSCQGRKVNCHARFFFLS*WARRRR
Trigger: CCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAA...TCGTGCGTGACAATTAACCTTTCTGCCTTGGCAGGATGTGCCGACAGCTTGCGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR CCA 90 bp ACGCACAAGTCCACGTGTCAGGAGCTGTGCCAGGACCAAGACCAACAGAGTAGCACTCCAAGGACCCCATaGGGGCAATACAGCAAATAC +
Preference number: 2 (lower is better)
Translates to: THKSTCQELCQDQDQQSSTPRTP*GQYSKY
Trigger: GTATTTGCTGTATTGCCCCCATGGGGTCCTTGGAGT...GCTACTCTGTTGGTCTTGGTCCTGGCACAGCTCCTGACACGTGGACTTGTGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR CCA 90 bp TCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGTGGGGGAAGCACCATTaGCCGTCCGAATCAGGCATC +
Preference number: 2 (lower is better)
Translates to: SPKERPHQSLSHSYPKFLWGKHH*PSESGI
Trigger: GATGCCTGATTCGGACGGCCAATGGTGCTTCCCCCA...CAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR-3UTR CCA 90 bp CCACGAGCTGGTTTCCTAGGAGGAGCCACCAGAGGTGGAGCTCAGAAGGATCAATGGAGCAGAGGACTTTaGGAAATGGAGGTCATGTGG +
Preference number: 2 (lower is better)
Translates to: PRAGFLGGATRGGAQKDQWSRGL*EMEVMW
Trigger: CCACATGACCTCCATTTCCCAAAGTCCTCTGCTCCA...TTGATCCTTCTGAGCTCCACCTCTGGTGGCTCCTCCTAGGAAACCAGCTCGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR TCA 90 bp CTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGATGGGAGGAGACCCGCTaGTGGAAGGGTGGACGGACA +
Preference number: 2 (lower is better)
Translates to: LSHSYPKFLELREEDGDGWEETR*WKGGRT
Trigger: TGTCCGTCCACCCTTCCATCAGCGGGTCTCCTCCCA...TCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR-3UTR TCA 90 bp CACGATGCCAACAGACAGACCTCCGGCGGATTCATTTGGTTTTGTTTTGTGGTTTGCCCTAGAGAGGAGTaGCTGGGATCATCTGGGGCC +
Preference number: 2 (lower is better)
Translates to: HDANRQTSGGFIWFCFVVCPREE*LGSSGA
Trigger: GGCCCCAGATGATCCCAGTCACTCCTCTCTAGGGCA...AACCACAAAACAAAACCAAATGAATCCGCCGGAGGTCTGTCTGTTGGCATCGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR GCA 90 bp GTTTCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTTTTCTTCTTGAGCTaGTGGGCAAGACGCCGGAGG +
Preference number: 2 (lower is better)
Translates to: VSPKERPHQSLSHSYPKFFFFLS*WARRRR
Trigger: CCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAA...GAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR-3UTR CCA 90 bp CAGAGTGAGAGGAACACGCCGCAAGCTGTCGGCACATCCTGCCAAGGCAGAAAGGGAAGAAGATGGCGATaGAGTTCAGTCCTTCTTTTT +
Preference number: 2 (lower is better)
Translates to: QSERNTPQAVGTSCQGRKGRRWR*SSVLLF
Trigger: AAAAAGAAGGACTGAACTCCATCGCCATCTTCTTCC...CTTTCTGCCTTGGCAGGATGTGCCGACAGCTTGCGGCGTGTTCCTCTCACTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR TCA 90 bp GCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGACCTTCTTTTTCTTCTTaGGCTGCTGGGCAAGACGCC +
Preference number: 2 (lower is better)
Translates to: ATPSVSLTLLSQVLGVKGPSFSS*AAGQDA
Trigger: GGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGG...TCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR-3UTR TCA 90 bp CCGCAAGCTGTCGGCACATCCTGCCAAGGCAGAAAGGTTAATTGTCACGCACGACAAGGAGTCTTTGTGTaGATTAGGAAAAGGATCCTT +
Preference number: 2 (lower is better)
Translates to: PQAVGTSCQGRKVNCHARQGVFV*IRKRIL
Trigger: AAGGATCCTTTTCCTAATTCACACAAAGACTCCTTG...TCGTGCGTGACAATTAACCTTTCTGCCTTGGCAGGATGTGCCGACAGCTTGCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CAA 90 bp AAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTaGGAGTTAAGGGAAGAAGATGGCGATGGAGTTCAGTCCTTCTTT +
Preference number: 2 (lower is better)
Translates to: KERPHQSLSHSYPKF*ELREEDGDGVQSFF
Trigger: AAAGAAGGACTGAACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR CCA 72 bp CCGTCTGTGGTCTTAGCCATGGAGTCCGAGGCAGCCTaGCCTGCCTGGAGGTGCCTCCCCTCAGAGCTGGCC +
Preference number: 3 (lower is better)
Translates to: PSVVLAMESEAA*PAWRCLPSELA
Trigger: GGCCAGCTCTGAGGGGAGGCACCTCCAGGCAGGCCAGGCTGCCTCGGACTCCATGGCTAAGACCACAGACGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CCA 72 bp GTGGACGGACACGTGGAGGGGTGGGGGAAGCACCATTaGCCGTCCGAATCAGGCATCGAGACAGACGGACGA +
Preference number: 3 (lower is better)
Translates to: VDGHVEGWGKHH*PSESGIETDGR
Trigger: TCGTCCGTCTGTCTCGATGCCTGATTCGGACGGCCAATGGTGCTTCCCCCACCCCTCCACGTGTCCGTCCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR TCA 72 bp CGCCAGTGTGTGAGATCACGCCTGAGGCTCCCAGAGTaGGAGGAACACGCCGCAAGCTGTCGGCACATCCTG +
Preference number: 3 (lower is better)
Translates to: RQCVRSRLRLPE*EEHAASCRHIL
Trigger: CAGGATGTGCCGACAGCTTGCGGCGTGTTCCTCTCACTCTGGGAGCCTCAGGCGTGATCTCACACACTGGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CCA 72 bp CCATCTCTAACCCACCTGAGAGGGCACCCAGCCACTTaGTGTGCTGGCCACACCCACCAAGAGGAGTCCACG +
Preference number: 3 (lower is better)
Translates to: PSLTHLRGHPAT*CAGHTHQEEST
Trigger: CGTGGACTCCTCTTGGTGGGTGTGGCCAGCACACCAAGTGGCTGGGTGCCCTCTCAGGTGGGTTAGAGATGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 72 bp TCTAACCCACCTGAGAGGGCACCCAGCCACTTGGTGTaGTGGCCACACCCACCAAGAGGAGTCCACGTCTTC +
Preference number: 3 (lower is better)
Translates to: SNPPERAPSHLV*WPHPPRGVHVF
Trigger: GAAGACGTGGACTCCTCTTGGTGGGTGTGGCCAGCACACCAAGTGGCTGGGTGCCCTCTCAGGTGGGTTAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CCA 72 bp GCACAGAGGCACCAGGGAGACGAGGTGACTGGTGTTTaGGCACCGTGGGAGGGGTTTTCTCCAGTCTGTGTG +
Preference number: 3 (lower is better)
Translates to: AQRHQGDEVTGV*APWEGFSPVCV
Trigger: CACACAGACTGGAGAAAACCCCTCCCACGGTGCCCAAACACCAGTCACCTCGTCTCCCTGGTGCCTCTGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CCA 72 bp GGAGCCACCAGAGGTGGAGCTCAGAAGGATCAAAGATaGGGAAGTGTGCAAGCAGGGAGGGGTGCGGGCAAG +
Preference number: 3 (lower is better)
Translates to: GATRGGAQKDQR*GSVQAGRGAGK
Trigger: CTTGCCCGCACCCCTCCCTGCTTGCACACTTCCCCATCTTTGATCCTTCTGAGCTCCACCTCTGGTGGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 72 bp GGCGATGGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTaGTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGAC +
Preference number: 3 (lower is better)
Translates to: GDGVQSFFFFLS*WARRRRPLGGD
Trigger: GTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR CCA 72 bp AACCCACCTGAGAGGGCACCCAGCCACTTGGTGTGCTaGCCACACCCACCAAGAGGAGTCCACGTCTTCAAA +
Preference number: 3 (lower is better)
Translates to: NPPERAPSHLVC*PHPPRGVHVFK
Trigger: TTTGAAGACGTGGACTCCTCTTGGTGGGTGTGGCCAGCACACCAAGTGGCTGGGTGCCCTCTCAGGTGGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 72 bp TCTCCCAGGTGTCCCACACCCACCTGGAAGGGCAGTTaGTGGAGCAGAGGACTTTGGGAAATGGAGGTCATG +
Preference number: 3 (lower is better)
Translates to: SPRCPTPTWKGS*WSRGLWEMEVM
Trigger: CATGACCTCCATTTCCCAAAGTCCTCTGCTCCAGCAACTGCCCTTCCAGGTGGGTGTGGGACACCTGGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 72 bp GCCAGAGACACGCACAAGTCCACGTGTCAGGAGCTGTaGCAGGACCAAGACCAACAGAGTAGCCTGTGTGTC +
Preference number: 3 (lower is better)
Translates to: ARDTHKSTCQEL*QDQDQQSSLCV
Trigger: GACACACAGGCTACTCTGTTGGTCTTGGTCCTGGCACAGCTCCTGACACGTGGACTTGTGCGTGTCTCTGGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CCA 72 bp ACCCTGCACAACCTTACATGGCAGTCGTGGCTGGGTTaGAATATGATGAGCAGGTCCCTTGCTGCCCTGGCC +
Preference number: 3 (lower is better)
Translates to: TLHNLTWQSWLG*NMMSRSLAALA
Trigger: GGCCAGGGCAGCAAGGGACCTGCTCATCATATTCCAACCCAGCCACGACTGCCATGTAAGGTTGTGCAGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 72 bp AGTCTCCCTCCTATTTGGCCACTCCAAGCCACAGGCTaGATCAGGGGCACAGCCAGTCCACAAGGAGTCTTT +
Preference number: 3 (lower is better)
Translates to: SLPPIWPLQATG*IRGTASPQGVF
Trigger: AAAGACTCCTTGTGGACTGGCTGTGCCCCTGATGCAGCCTGTGGCTTGGAGTGGCCAAATAGGAGGGAGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CCA 72 bp CCCACGAGCTGGTTTCCTAGGAGGAGCCACCAGAGGTaGAGCTCAGAAGGATCAAAGATGGGGAAGTGTGCA +
Preference number: 3 (lower is better)
Translates to: PTSWFPRRSHQR*SSEGSKMGKCA
Trigger: TGCACACTTCCCCATCTTTGATCCTTCTGAGCTCCACCTCTGGTGGCTCCTCCTAGGAAACCAGCTCGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR CAA 90 bp CACGATGCCAACAGACAGACCTCCGGCGGATTCATTTGGTTTTGTTTTGTGGTTAGGGCACCCAGCCACTaGGTGTGCTGGCCACACCCA +
Preference number: 3 (lower is better)
Translates to: HDANRQTSGGFIWFCFVVRAPSH*VCWPHP
Trigger: TGGGTGTGGCCAGCACACCAAGTGGCTGGGTGCCCT...AACCACAAAACAAAACCAAATGAATCCGCCGGAGGTCTGTCTGTTGGCATCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 72 bp AGTGAGAGGAACACGCCGCAAGCTGTCGGCACATCCTaGCAAGGCAGAAAGGTTAATTGTCACGCACGATGC +
Preference number: 3 (lower is better)
Translates to: SERNTPQAVGTS*QGRKVNCHARC
Trigger: GCATCGTGCGTGACAATTAACCTTTCTGCCTTGGCAGGATGTGCCGACAGCTTGCGGCGTGTTCCTCTCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 72 bp CGCATGTGTGAGCATGTATGTGTGTGTGTGTGTATGTaGACGCCAGTGTGTGAGATCACGCCTGAGGCTCCC +
Preference number: 3 (lower is better)
Translates to: RMCEHVCVCVCM*TPVCEITPEAP
Trigger: GGGAGCCTCAGGCGTGATCTCACACACTGGCGTGCACATACACACACACACACATACATGCTCACACATGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR CAA 90 bp CACGATGCCAACAGACAGACCTCCGGCGGATTCATTTGGTTTTGTTTTGTGGTTCGAGGTGACTGGTGTTaGGGCACCGTGGGAGGGGTT +
Preference number: 3 (lower is better)
Translates to: HDANRQTSGGFIWFCFVVRGDWC*GTVGGV
Trigger: AACCCCTCCCACGGTGCCCAAACACCAGTCACCTCG...AACCACAAAACAAAACCAAATGAATCCGCCGGAGGTCTGTCTGTTGGCATCGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 72 bp CTCCCTGCATACAATGTCCTTGTGCAGTACACACCCTaGACAACCTTACATGGCAGTCGTGGCTGGGTTGGA +
Preference number: 3 (lower is better)
Translates to: LPAYNVLVQYTP*TTLHGSRGWVG
Trigger: TCCAACCCAGCCACGACTGCCATGTAAGGTTGTGCAGGGTGTGTACTGCACAAGGACATTGTATGCAGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CCA 72 bp GCAGTACACACCCTGCACAACCTTACATGGCAGTCGTaGCTGGGTTGGAATATGATGAGCAGGTCCCTTGCT +
Preference number: 3 (lower is better)
Translates to: AVHTLHNLTWQS*LGWNMMSRSLA
Trigger: AGCAAGGGACCTGCTCATCATATTCCAACCCAGCCACGACTGCCATGTAAGGTTGTGCAGGGTGTGTACTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR CAA 90 bp CACGATGCCAACAGACAGACCTCCGGCGGATTCATTTGGTTTTGTTTTGTGGTTCAGTCTCCCTCCTATTaGGCCACTCCAAGCCACAGG +
Preference number: 3 (lower is better)
Translates to: HDANRQTSGGFIWFCFVVQSPSY*ATPSHR
Trigger: CCTGTGGCTTGGAGTGGCCAAATAGGAGGGAGACTG...AACCACAAAACAAAACCAAATGAATCCGCCGGAGGTCTGTCTGTTGGCATCGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR GCA 72 bp TCCTGCCAAGGCAGAAAGGTTAATTGTCACGCACGATaGCAACAGACAGACCTCCGGCGGATTCATTTGGTT +
Preference number: 3 (lower is better)
Translates to: SCQGRKVNCHAR*QQTDLRRIHLV
Trigger: AACCAAATGAATCCGCCGGAGGTCTGTCTGTTGGCATCGTGCGTGACAATTAACCTTTCTGCCTTGGCAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR CAA 90 bp GGGCAGTTGCTGGAGCAGAGGACTTTGGGAAATGGAGGTCATGTGGACAGCAGTTCTTATCCCAAGTTCTaGGAGTTAAGGGAAGAAGAT +
Preference number: 3 (lower is better)
Translates to: GQLLEQRTLGNGGHVDSSSYPKF*ELREED
Trigger: ATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGA...ACTGCTGTCCACATGACCTCCATTTCCCAAAGTCCTCTGCTCCAGCAACTGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR-3UTR CAA 90 bp CTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGATCCTTCTTTTTCTTCTaGAGCTGCTGGGCAAGACGC +
Preference number: 3 (lower is better)
Translates to: LSHSYPKFLELREEDGDGSFFFF*SCWARR
Trigger: GCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGA...TCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR GCA 72 bp CAAATCAGCTTTATCTATGATGTGAACAGTGCTCCCTaGATACAATGTCCTTGTGCAGTACACACCCTGCAC +
Preference number: 3 (lower is better)
Translates to: QISFIYDVNSAP*IQCPCAVHTLH
Trigger: GTGCAGGGTGTGTACTGCACAAGGACATTGTATGCAGGGAGCACTGTTCACATCATAGATAAAGCTGATTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CCA 72 bp TCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATaGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTG +
Preference number: 3 (lower is better)
Translates to: SQVLGVKGRRWR*SSVLLFLLELL
Trigger: CAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR CCA 72 bp CTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATaGCGATGGAGTTCAGTCCTTCTTTTTCTTCTTGAG +
Preference number: 3 (lower is better)
Translates to: LLSQVLGVKGRR*RWSSVLLFLLE
Trigger: CTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp GAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGAAGGAGGCGCTCAGGCCTCTaGAGCCGCGGCTCACCCGCA +
Preference number: 4 (lower is better)
Translates to: ELLGKTPEAAGRRPADGRRRSGL*SRGSPA
Trigger: TGCGGGTGAGCCGCGGCTGCAGAGGCCTGAGCGCCT...CCTTCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp CTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGAAGGGTGGACCAGCCGGAGCAGCGCTaGACCTCCACACAGGGCGGC +
Preference number: 4 (lower is better)
Translates to: LGKTPEAAGRRPADGRVDQPEQR*TSTQGG
Trigger: GCCGCCCTGTGTGGAGGTGCAGCGCTGCTCCGGCTG...GTCCACCCTTCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp ACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGAAGGGTGGACGGACACGTGTCCGAGGCCGCTACCTaGGCGGATCCCGAGCCCGAG +
Preference number: 4 (lower is better)
Translates to: TPEAAGRRPADGRVDGHVSEAAT*ADPEPE
Trigger: CTCGGGCTCGGGATCCGCCCAGGTAGCGGCCTCGGA...CACGTGTCCGTCCACCCTTCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp CTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGAAGGGTGGACGGTCGCAGCTGCACCTaGGTGGGGCGGCACTGCACG +
Preference number: 4 (lower is better)
Translates to: LGKTPEAAGRRPADGRVDGRSCT*VGRHCT
Trigger: CGTGCAGTGCCGCCCCACCCAGGTGCAGCTGCGACC...GTCCACCCTTCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp CTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGACACAGCGCTCAGGTGTaGCCCAGGCCAGGTGCAGGG +
Preference number: 4 (lower is better)
Translates to: LELLGKTPEAAGRRPADGHSAQV*PRPGAG
Trigger: CCCTGCACCTGGCCTGGGCCACACCTGAGCGCTGTG...TCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp CCCAGCCCACGAGCTGGTTTCCTAGGAGGAGCCACCAGAGGTGGAGCTCAGAAGGCGTCCTCTGCGGGCTaGGGGCTGCGAGCTGCGAGC +
Preference number: 4 (lower is better)
Translates to: PSPRAGFLGGATRGGAQKASSAG*GLRAAS
Trigger: GCTCGCAGCTCGCAGCCCGCAGCCCGCAGAGGACGC...CTTCTGAGCTCCACCTCTGGTGGCTCCTCCTAGGAAACCAGCTCGTGGGCTGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp CTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGAAGGGTGGACATGAAAAATGGGCGCTaGCGGCCGGAGGGGAGCCCT +
Preference number: 4 (lower is better)
Translates to: LGKTPEAAGRRPADGRVDMKNGR*RPEGSP
Trigger: AGGGCTCCCCTCCGGCCGCCAGCGCCCATTTTTCAT...GTCCACCCTTCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp TCTGTGTGCCCGTCTGTGGTCTTAGCCATGGAGTCCGAGGCAGCCTGGCCTGCCGCAGCCTGGCCTGCCTaGAGGTGCCTCCCCTCAGAG +
Preference number: 4 (lower is better)
Translates to: SVCPSVVLAMESEAAWPAAAWPA*RCLPSE
Trigger: CTCTGAGGGGAGGCACCTCCAGGCAGGCCAGGCTGC...GGCAGGCCAGGCTGCCTCGGACTCCATGGCTAAGACCACAGACGGGCACACAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp GGAGACGAGGTGACTGGTGTTTGGGCACCGTGGGAGGGGTTTTCTCCAGTCTGTCCGGGCAGGGAGAGGTaGAAACTCCCGCCCGGGCCG +
Preference number: 4 (lower is better)
Translates to: GDEVTGVWAPWEGFSPVCPGRER*KLPPGP
Trigger: CGGCCCGGGCGGGAGTTTGCACCTCTCCCTGCCCGG...ACAGACTGGAGAAAACCCCTCCCACGGTGCCCAAACACCAGTCACCTCGTCTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp TTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGGCACGTTGCGGTTGTTaGAGCAGCCGGAGCAGCGCT +
Preference number: 4 (lower is better)
Translates to: FFLSCWARRRRPLGGDPLARCGC*SSRSSA
Trigger: AGCGCTGCTCCGGCTGCTGCAACAACCGCAACGTGC...CAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp TCTGTGTGCCCGTCTGTGGTCTTAGCCATGGAGTCCGAGGCAGCCTGGCCTGCCGGCGGCACTGCACGTTaGGGTTGTTGCAGCAGCCGG +
Preference number: 4 (lower is better)
Translates to: SVCPSVVLAMESEAAWPAGGTAR*GCCSSR
Trigger: CCGGCTGCTGCAACAACCGCAACGTGCAGTGCCGCC...GGCAGGCCAGGCTGCCTCGGACTCCATGGCTAAGACCACAGACGGGCACACAGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp CTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGATGTGGACAGCAGTGTTaGCTCCCTGCCCCTACCACA +
Preference number: 4 (lower is better)
Translates to: LELLGKTPEAAGRRPADGCGQQC*LPAPTT
Trigger: TGTGGTAGGGGCAGGGAGGCAACACTGCTGTCCACA...TCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp TCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGCCTGGGCGCAGGACCTaGGTCCGAGGCCGCTACCTG +
Preference number: 4 (lower is better)
Translates to: SVLLFLLELLGKTPEAAGPGRRT*VRGRYL
Trigger: CAGGTAGCGGCCTCGGACCCAGGTCCTGCGCCCAGG...CCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp GAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGAAGGTCGATCTTTCTCACCTaGACAGGTCGCAGCTGCACC +
Preference number: 4 (lower is better)
Translates to: ELLGKTPEAAGRRPADGRSIFLT*TGRSCT
Trigger: GGTGCAGCTGCGACCTGTCCAGGTGAGAAAGATCGA...CCTTCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp GGAGACGAGGTGACTGGTGTTTGGGCACCGTGGGAGGGGTTTTCTCCAGTCTGTTCCGGTGCTTGCCCTTaGGGGGCCGGCGGACTCGCA +
Preference number: 4 (lower is better)
Translates to: GDEVTGVWAPWEGFSPVCSGACP*GAGGLA
Trigger: TGCGAGTCCGCCGGCCCCCCAAGGGCAAGCACCGGA...ACAGACTGGAGAAAACCCCTCCCACGGTGCCCAAACACCAGTCACCTCGTCTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR TCA 90 bp CTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGAAGGGTGGACAACCAGAGGAAGAGGTaGATCAGAGTGGAGTGTGGG +
Preference number: 4 (lower is better)
Translates to: LGKTPEAAGRRPADGRVDNQRKR*IRVECG
Trigger: CCCACACTCCACTCTGATTCACCTCTTCCTCTGGTT...GTCCACCCTTCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR TCA 90 bp CCCTGCCCCTACCACAGTCTCCCTCCTATTTGGCCACTCCAAGCCACAGGCTGCCTGAGGCTCCCAGAGTaGGAGGAACACGCCGCAAGC +
Preference number: 4 (lower is better)
Translates to: PCPYHSLPPIWPLQATGCLRLPE*EEHAAS
Trigger: GCTTGCGGCGTGTTCCTCTCACTCTGGGAGCCTCAG...GCAGCCTGTGGCTTGGAGTGGCCAAATAGGAGGGAGACTGTGGTAGGGGCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp GTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGCAGCCGGAGCAGCGCTaGACCTCCACACAGGGCGGC +
Preference number: 4 (lower is better)
Translates to: VQSFFFFLSCWARRRRPLQPEQR*TSTQGG
Trigger: GCCGCCCTGTGTGGAGGTGCAGCGCTGCTCCGGCTG...CAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp GGGAAGCACCATTGGCCGTCCGAATCAGGCATCGAGACAGACGGACGAGGGAAAGCAGCTGCACCTGGGTaGGGCGGCACTGCACGTTGC +
Preference number: 4 (lower is better)
Translates to: GKHHWPSESGIETDGRGKAAAPG*GGTARC
Trigger: GCAACGTGCAGTGCCGCCCCACCCAGGTGCAGCTGC...TTTCCCTCGTCCGTCTGTCTCGATGCCTGATTCGGACGGCCAATGGTGCTTCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp CCCAGCCCACGAGCTGGTTTCCTAGGAGGAGCCACCAGAGGTGGAGCTCAGAAGCTCGCACCGTCCGAATaGTCACCCGAGTTTGGGGCG +
Preference number: 4 (lower is better)
Translates to: PSPRAGFLGGATRGGAQKLAPSE*SPEFGA
Trigger: CGCCCCAAACTCGGGTGACCATTCGGACGGTGCGAG...CTTCTGAGCTCCACCTCTGGTGGCTCCTCCTAGGAAACCAGCTCGTGGGCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR TCA 90 bp CTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGACCTTCTTTTTCTTCTTaGGCTGCTGGGCAAGACGCC +
Preference number: 4 (lower is better)
Translates to: LELLGKTPEAAGRRPADGPSFSS*AAGQDA
Trigger: GGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGG...TCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp ATGTCCTTGTGCAGTACACACCCTGCACAACCTTACATGGCAGTCGTGGCTGGGCCCAGCAGCGATTCATaGCGACTCCGGGCCCGGCCC +
Preference number: 4 (lower is better)
Translates to: MSLCSTHPAQPYMAVVAGPSSDS*RLRARP
Trigger: GGGCCGGGCCCGGAGTCGGCATGAATCGCTGCTGGG...CCCAGCCACGACTGCCATGTAAGGTTGTGCAGGGTGTGTACTGCACAAGGACAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp ACGCACAAGTCCACGTGTCAGGAGCTGTGCCAGGACCAAGACCAACAGAGTAGCTGGACAGGTCGCAGCTaGACCTGGGTGGGGCGGCAC +
Preference number: 4 (lower is better)
Translates to: THKSTCQELCQDQDQQSSWTGRS*TWVGRH
Trigger: GTGCCGCCCCACCCAGGTGCAGCTGCGACCTGTCCA...GCTACTCTGTTGGTCTTGGTCCTGGCACAGCTCCTGACACGTGGACTTGTGCGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp CTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGAAAGGGTCTCCTTCAGTaGCGTCTTGTCATGCGTGTG +
Preference number: 4 (lower is better)
Translates to: LELLGKTPEAAGRRPADGKGLLQ*RLVMRV
Trigger: CACACGCATGACAAGACGGCACTGAAGGAGACCCTT...TCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp ACGCACAAGTCCACGTGTCAGGAGCTGTGCCAGGACCAAGACCAACAGAGTAGCTGGCCTGCCTGGAGGTaGCTCCCCTCAGAGCTGGCC +
Preference number: 4 (lower is better)
Translates to: THKSTCQELCQDQDQQSSWPAWR*LPSELA
Trigger: GGCCAGCTCTGAGGGGAGGCACCTCCAGGCAGGCCA...GCTACTCTGTTGGTCTTGGTCCTGGCACAGCTCCTGACACGTGGACTTGTGCGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp AGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTAGGCGTCTAGCCGTGTaGGGGCGCCCAGGGGACTCC +
Preference number: 4 (lower is better)
Translates to: SSVLLFLLELLGKTPEAARRLAV*GRPGDS
Trigger: GGAGTCCCCTGGGCGCCCCCACACGGCTAGACGCCT...AGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp CCCTGCCCCTACCACAGTCTCCCTCCTATTTGGCCACTCCAAGCCACAGGCTGCAGCTCGCCTCCAGAGTaGGAGCGGGTCATGTTCAGG +
Preference number: 4 (lower is better)
Translates to: PCPYHSLPPIWPLQATGCSSPPE*ERVMFR
Trigger: CCTGAACATGACCCGCTCCCACTCTGGAGGCGAGCT...GCAGCCTGTGGCTTGGAGTGGCCAAATAGGAGGGAGACTGTGGTAGGGGCAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp ACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGAAGGGTGGACGGACACGTGACTCCAAGGACCCCATaGGGGCAATACAGCAAATAC +
Preference number: 4 (lower is better)
Translates to: TPEAAGRRPADGRVDGHVTPRTP*GQYSKY
Trigger: GTATTTGCTGTATTGCCCCCATGGGGTCCTTGGAGT...CACGTGTCCGTCCACCCTTCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR TCA 90 bp GGGAAGCACCATTGGCCGTCCGAATCAGGCATCGAGACAGACGGACGAGGGAAACGTTGGTGCGGTCTATaGGGCGCCGGGAGATCTCGA +
Preference number: 4 (lower is better)
Translates to: GKHHWPSESGIETDGRGKRWCGL*GAGRSR
Trigger: TCGAGATCTCCCGGCGCCTCATAGACCGCACCAACG...TTTCCCTCGTCCGTCTGTCTCGATGCCTGATTCGGACGGCCAATGGTGCTTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp CCTGTGTGTCTCTTCTTCCCGCCAGACAGAGGCCTCCCCCAAGTTGCAGGCCTGCTCCGGTTTTCTCTTTaGAGCGAGGCTGGAGGGTGG +
Preference number: 4 (lower is better)
Translates to: PVCLFFPPDRGLPQVAGLLRFSL*SEAGGW
Trigger: CCACCCTCCAGCCTCGCTGCAAAGAGAAAACCGGAG...CAGGCCTGCAACTTGGGGGAGGCCTCTGTCTGGCGGGAAGAAGAGACACACAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp GACAGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATGTCCGTCGGTCCGTCTaGCCGCCCGCTCGCCGCTCT +
Preference number: 4 (lower is better)
Translates to: DRRTRETILSLQGPHGGNVRRSV*PPARRS
Trigger: AGAGCGGCGAGCGGGCGGGCAGACGGACCGACGGAC...ATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp TCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGTGGGTGGGGCGGCACTaGACGTTGCGGTTGTTGCAG +
Preference number: 4 (lower is better)
Translates to: SVLLFLLELLGKTPEAAGWVGRH*TLRLLQ
Trigger: CTGCAACAACCGCAACGTGCAGTGCCGCCCCACCCA...CCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp TCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGGGCAGGGGAGGACCTaGGCGCAGGACCTGGGTCCG +
Preference number: 4 (lower is better)
Translates to: SPKERPHQSLSHSYPKFLGQGRT*AQDLGP
Trigger: CGGACCCAGGTCCTGCGCCCAGGTCCTCCCCTGCCC...CAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp CCCAGCCCACGAGCTGGTTTCCTAGGAGGAGCCACCAGAGGTGGAGCTCAGAAGGAGTTTGGGGCGTTTTaGCTCGCTGCTCCTGGGAAC +
Preference number: 4 (lower is better)
Translates to: PSPRAGFLGGATRGGAQKEFGAF*LAAPGN
Trigger: GTTCCCAGGAGCAGCGAGCCAAAACGCCCCAAACTC...CTTCTGAGCTCCACCTCTGGTGGCTCCTCCTAGGAAACCAGCTCGTGGGCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp CTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGAACTCCAAGGACCCCATaGGGGCAATACAGCAAATAC +
Preference number: 4 (lower is better)
Translates to: LELLGKTPEAAGRRPADGTPRTP*GQYSKY
Trigger: GTATTTGCTGTATTGCCCCCATGGGGTCCTTGGAGT...TCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp TTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGCAGTCGTGGCTGGGTTaGAATATGATGAGCAGGTCC +
Preference number: 4 (lower is better)
Translates to: FFLSCWARRRRPLGGDPLQSWLG*NMMSRS
Trigger: GGACCTGCTCATCATATTCCAACCCAGCCACGACTG...CAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp TCTCCAGTCTGTGTGCCCGTCTGTGGTCTTAGCCATGGAGTCCGAGGCAGCCTGTGTCCCACACCCACCTaGAAGGGCAGTTGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: SPVCVPVCGLSHGVRGSLCPTPT*KGSCWS
Trigger: GCTCCAGCAACTGCCCTTCCAGGTGGGTGTGGGACA...CAGGCTGCCTCGGACTCCATGGCTAAGACCACAGACGGGCACACAGACTGGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CAA 72 bp TCCATCTCTAACCCACCTGAGAGGGCACCCAGCCACTaGGTGTGCTGGCCACACCCACCAAGAGGAGTCCAC +
Preference number: 4 (lower is better)
Translates to: SISNPPERAPSH*VCWPHPPRGVH
Trigger: GTGGACTCCTCTTGGTGGGTGTGGCCAGCACACCAAGTGGCTGGGTGCCCTCTCAGGTGGGTTAGAGATGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR TCA 90 bp AGGGGTTTTCTCCAGTCTGTGTGCCCGTCTGTGGTCTTAGCCATGGAGTCCGAGCGTTGGTGCGGTCTATaGGGCGCCGGGAGATCTCGA +
Preference number: 4 (lower is better)
Translates to: RGFLQSVCPSVVLAMESERWCGL*GAGRSR
Trigger: TCGAGATCTCCCGGCGCCTCATAGACCGCACCAACG...CTCGGACTCCATGGCTAAGACCACAGACGGGCACACAGACTGGAGAAAACCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR TCA 90 bp AGACACGCACAAGTCCACGTGTCAGGAGCTGTGCCAGGACCAAGACCAACAGAGTGGGAGGAGACCCGCTaGTGGAAGGGTGGACGGACA +
Preference number: 4 (lower is better)
Translates to: RHAQVHVSGAVPGPRPTEWEETR*WKGGRT
Trigger: TGTCCGTCCACCCTTCCATCAGCGGGTCTCCTCCCA...CTCTGTTGGTCTTGGTCCTGGCACAGCTCCTGACACGTGGACTTGTGCGTGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp TCTGTGTGCCCGTCTGTGGTCTTAGCCATGGAGTCCGAGGCAGCCTGGCCTGCCAAGGGTCTCCTTCAGTaGCGTCTTGTCATGCGTGTG +
Preference number: 4 (lower is better)
Translates to: SVCPSVVLAMESEAAWPAKGLLQ*RLVMRV
Trigger: CACACGCATGACAAGACGGCACTGAAGGAGACCCTT...GGCAGGCCAGGCTGCCTCGGACTCCATGGCTAAGACCACAGACGGGCACACAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp CCCGTTTCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGGTGGCCCAGGCCAGGTaGAGGGGAAGGAGCCCGTTT +
Preference number: 4 (lower is better)
Translates to: PVSPKERPHQSLSHSYPKVAQAR*RGRSPF
Trigger: AAACGGGCTCCTTCCCCTGCACCTGGCCTGGGCCAC...CTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGAAACGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp TCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGCCCAGCCACTTGGTGTaGTGGCCACACCCACCAAGA +
Preference number: 4 (lower is better)
Translates to: SVLLFLLELLGKTPEAAGPSHLV*WPHPPR
Trigger: TCTTGGTGGGTGTGGCCAGCACACCAAGTGGCTGGG...CCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp ATCGAGACAGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGTCCGGTGCTTGCCCTTaGGGGGCCGGCGGACTCGCA +
Preference number: 4 (lower is better)
Translates to: IETDGRGKQYYHSKDPMGSGACP*GAGGLA
Trigger: TGCGAGTCCGCCGGCCCCCCAAGGGCAAGCACCGGA...CCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGTCTCGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp CCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGCACAGCGCTCAGGTGTaGCCCAGGCCAGGTGCAGGG +
Preference number: 4 (lower is better)
Translates to: PPKSDPISLSHTLIPSSWHSAQV*PRPGAG
Trigger: CCCTGCACCTGGCCTGGGCCACACCTGAGCGCTGTG...CCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp TCTCCAGTCTGTGTGCCCGTCTGTGGTCTTAGCCATGGAGTCCGAGGCAGCCTGTCAAGAGCCCCTTGGTaGAGCAGACTGAAGGGCCAG +
Preference number: 4 (lower is better)
Translates to: SPVCVPVCGLSHGVRGSLSRAPW*SRLKGQ
Trigger: CTGGCCCTTCAGTCTGCTCCACCAAGGGGCTCTTGA...CAGGCTGCCTCGGACTCCATGGCTAAGACCACAGACGGGCACACAGACTGGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR TCA 90 bp GCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAGGTCCCCCTCGGCGCTaGCCAGACGCAGGTAGCAGC +
Preference number: 4 (lower is better)
Translates to: ATPSVSLTLLSQVLGVKGGPPRR*PDAGSS
Trigger: GCTGCTACCTGCGTCTGGTCAGCGCCGAGGGGGACC...TCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR TCA 90 bp AGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTTGGGAGGAGACCCGCTaGTGGAAGGGTGGACGGACA +
Preference number: 4 (lower is better)
Translates to: SSVLLFLLELLGKTPEAAWEETR*WKGGRT
Trigger: TGTCCGTCCACCCTTCCATCAGCGGGTCTCCTCCCA...AGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp ACAGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATACTGCGGGCTGCGAGCTaGGAGCTGCGAGCTGCGGCT +
Preference number: 4 (lower is better)
Translates to: TDGRGKQYYHSKDPMGAILRAAS*ELRAAA
Trigger: AGCCGCAGCTCGCAGCTCGCAGCTCGCAGCCCGCAG...TATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp CACGATGCCAACAGACAGACCTCCGGCGGATTCATTTGGTTTTGTTTTGTGGTTCTGCGGGCTGCGGGCTaGGAGCTGCGAGCTGCGAGC +
Preference number: 4 (lower is better)
Translates to: HDANRQTSGGFIWFCFVVLRAAG*ELRAAS
Trigger: GCTCGCAGCTCGCAGCTCGCAGCCCGCAGCCCGCAG...AACCACAAAACAAAACCAAATGAATCCGCCGGAGGTCTGTCTGTTGGCATCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp AGAAGATGGCGATGGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGGCTCTGGGCGTCCTCTaGGGGCTGCGGGCTGCGAGC +
Preference number: 4 (lower is better)
Translates to: RRWRWSSVLLFLLELLGKALGVL*GLRAAS
Trigger: GCTCGCAGCCCGCAGCCCGCAGAGGACGCCCAGAGC...CTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATCTTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp GTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGTCTCCGGGGTCTCCGTaGAGCAGGCGTTGGAGATCA +
Preference number: 4 (lower is better)
Translates to: VQSFFFFLSCWARRRRPLSPGSP*SRRWRS
Trigger: TGATCTCCAACGCCTGCTGCACGGAGACCCCGGAGA...CAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp CCACGAGCTGGTTTCCTAGGAGGAGCCACCAGAGGTGGAGCTCAGAAGGATCAATCTCGAACACCTCGGTaGGCGTCTTGCACTCGGCGA +
Preference number: 4 (lower is better)
Translates to: PRAGFLGGATRGGAQKDQSRTPR*ASCTRR
Trigger: TCGCCGAGTGCAAGACGCGCACCGAGGTGTTCGAGA...TTGATCCTTCTGAGCTCCACCTCTGGTGGCTCCTCCTAGGAAACCAGCTCGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp GTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGTCTCGAACACCTCGGTaGGCGTCTTGCACTCGGCGA +
Preference number: 4 (lower is better)
Translates to: VQSFFFFLSCWARRRRPLSRTPR*ASCTRR
Trigger: TCGCCGAGTGCAAGACGCGCACCGAGGTGTTCGAGA...CAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp ATGTCCTTGTGCAGTACACACCCTGCACAACCTTACATGGCAGTCGTGGCTGGGTGCGGGCAAGAGGGCTaGACCCTCCCTTGGAGACCT +
Preference number: 4 (lower is better)
Translates to: MSLCSTHPAQPYMAVVAGCGQEG*TLPWRP
Trigger: AGGTCTCCAAGGGAGGGTGCAGCCCTCTTGCCCGCA...CCCAGCCACGACTGCCATGTAAGGTTGTGCAGGGTGTGTACTGCACAAGGACAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp CAGAGTGAGAGGAACACGCCGCAAGCTGTCGGCACATCCTGCCAAGGCAGAAAGAAAGATGGGGAAGTGTaGAAGCAGGGAGGGGTGCGG +
Preference number: 4 (lower is better)
Translates to: QSERNTPQAVGTSCQGRKKDGEV*KQGGVR
Trigger: CCGCACCCCTCCCTGCTTGCACACTTCCCCATCTTT...CTTTCTGCCTTGGCAGGATGTGCCGACAGCTTGCGGCGTGTTCCTCTCACTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp CCGCAAGCTGTCGGCACATCCTGCCAAGGCAGAAAGGTTAATTGTCACGCACGATGGCCGGCTCAGCAATaGTCAGGGAACCCAGGCTCC +
Preference number: 4 (lower is better)
Translates to: PQAVGTSCQGRKVNCHARWPAQQ*SGNPGS
Trigger: GGAGCCTGGGTTCCCTGACCATTGCTGAGCCGGCCA...TCGTGCGTGACAATTAACCTTTCTGCCTTGGCAGGATGTGCCGACAGCTTGCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp ATCGAGACAGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAGCTGCACCTGGGTaGGGCGGCACTGCACGTTGC +
Preference number: 4 (lower is better)
Translates to: IETDGRGKQYYHSKDPMGAAAPG*GGTARC
Trigger: GCAACGTGCAGTGCCGCCCCACCCAGGTGCAGCTGC...CCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGTCTCGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp GGAGACGAGGTGACTGGTGTTTGGGCACCGTGGGAGGGGTTTTCTCCAGTCTGTATGGTCACCCGAGTTTaGGGCGTTTTGGCTCGCTGC +
Preference number: 4 (lower is better)
Translates to: GDEVTGVWAPWEGFSPVCMVTRV*GVLARC
Trigger: GCAGCGAGCCAAAACGCCCCAAACTCGGGTGACCAT...ACAGACTGGAGAAAACCCCTCCCACGGTGCCCAAACACCAGTCACCTCGTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp GACAGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATGAGTCCGAGGCAGCCTaGCCTGCCTGGAGGTGCCTC +
Preference number: 4 (lower is better)
Translates to: DRRTRETILSLQGPHGGNESEAA*PAWRCL
Trigger: GAGGCACCTCCAGGCAGGCCAGGCTGCCTCGGACTC...ATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp CAATGTCCTTGTGCAGTACACACCCTGCACAACCTTACATGGCAGTCGTGGCTGGGGCACCCAGCCACTTaGTGTGCTGGCCACACCCAC +
Preference number: 4 (lower is better)
Translates to: QCPCAVHTLHNLTWQSWLGHPAT*CAGHTH
Trigger: GTGGGTGTGGCCAGCACACCAAGTGGCTGGGTGCCC...CAGCCACGACTGCCATGTAAGGTTGTGCAGGGTGTGTACTGCACAAGGACATTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp GATGGCGATGGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCCTCGGTGCGCGTCTTaGACTCGGCGATCATGGCCG +
Preference number: 4 (lower is better)
Translates to: DGDGVQSFFFFLSCWARRPRCAS*TRRSWP
Trigger: CGGCCATGATCGCCGAGTGCAAGACGCGCACCGAGG...GCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp GATGGCGATGGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCGGCGGCACTGCACGTTaGGGTTGTTGCAGCAGCCGG +
Preference number: 4 (lower is better)
Translates to: DGDGVQSFFFFLSCWARRGGTAR*GCCSSR
Trigger: CCGGCTGCTGCAACAACCGCAACGTGCAGTGCCGCC...GCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp CCCGTTTCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTCGGGTCACAGGCCGTaGAGCTGCCACTGTCTCACA +
Preference number: 4 (lower is better)
Translates to: PVSPKERPHQSLSHSYPKSGHRP*SCHCLT
Trigger: TGTGAGACAGTGGCAGCTGCACGGCCTGTGACCCGA...CTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGAAACGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp GGGTGGCAGGAGGCAGGGGATACCCAGGTCACCATCTACAGCCACCTCAACAGCAGTGCCGTCTTGTCATaGGTGTGCTTGAATTTCCGG +
Preference number: 4 (lower is better)
Translates to: GWQEAGDTQVTIYSHLNSSAVLS*VCLNFR
Trigger: CCGGAAATTCAAGCACACGCATGACAAGACGGCACT...GCTGTTGAGGTGGCTGTAGATGGTGACCTGGGTATCCCCTGCCTCCTGCCACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp AGGGGTTTTCTCCAGTCTGTGTGCCCGTCTGTGGTCTTAGCCATGGAGTCCGAGTGGGGGAAGCACCATTaGCCGTCCGAATCAGGCATC +
Preference number: 4 (lower is better)
Translates to: RGFLQSVCPSVVLAMESEWGKHH*PSESGI
Trigger: GATGCCTGATTCGGACGGCCAATGGTGCTTCCCCCA...CTCGGACTCCATGGCTAAGACCACAGACGGGCACACAGACTGGAGAAAACCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000331163.11
3UTR CAA 72 bp CACCCTGCACAACCTTACATGGCAGTCGTGGCTGGGTaGGAATATGATGAGCAGGTCCCTTGCTGCCCTGGC +
Preference number: 4 (lower is better)
Translates to: HPAQPYMAVVAG*EYDEQVPCCPG
Trigger: GCCAGGGCAGCAAGGGACCTGCTCATCATATTCCAACCCAGCCACGACTGCCATGTAAGGTTGTGCAGGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp CCATTGGCCGTCCGAATCAGGCATCGAGACAGACGGACGAGGGAAACAATATTAGCACGTTGCGGTTGTTaGAGCAGCCGGAGCAGCGCT +
Preference number: 4 (lower is better)
Translates to: PLAVRIRHRDRRTRETILARCGC*SSRSSA
Trigger: AGCGCTGCTCCGGCTGCTGCAACAACCGCAACGTGC...TAATATTGTTTCCCTCGTCCGTCTGTCTCGATGCCTGATTCGGACGGCCAATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp AGAAGATGGCGATGGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGTGGACAGGTCGCAGCTaGACCTGGGTGGGGCGGCAC +
Preference number: 4 (lower is better)
Translates to: RRWRWSSVLLFLLELLGKWTGRS*TWVGRH
Trigger: GTGCCGCCCCACCCAGGTGCAGCTGCGACCTGTCCA...CTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATCTTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp TGGGGGAAGCACCATTGGCCGTCCGAATCAGGCATCGAGACAGACGGACGAGGGGTCTTGTCATGCGTGTaGTTGAATTTCCGGTGCTTG +
Preference number: 4 (lower is better)
Translates to: WGKHHWPSESGIETDGRGVLSCV*LNFRCL
Trigger: CAAGCACCGGAAATTCAAGCACACGCATGACAAGAC...CCCTCGTCCGTCTGTCTCGATGCCTGATTCGGACGGCCAATGGTGCTTCCCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp TCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGGAAAAGAAGCCACTGTaGACAGAGGCACCAGGGAGA +
Preference number: 4 (lower is better)
Translates to: SVLLFLLELLGKTPEAAGEKKPL*TEAPGR
Trigger: TCTCCCTGGTGCCTCTGTGCACAGTGGCTTCTTTTC...CCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp AGACACGCACAAGTCCACGTGTCAGGAGCTGTGCCAGGACCAAGACCAACAGAGACCTGGAAGGGCAGTTaGTGGAGCAGAGGACTTTGG +
Preference number: 4 (lower is better)
Translates to: RHAQVHVSGAVPGPRPTETWKGS*WSRGLW
Trigger: CCAAAGTCCTCTGCTCCAGCAACTGCCCTTCCAGGT...CTCTGTTGGTCTTGGTCCTGGCACAGCTCCTGACACGTGGACTTGTGCGTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp CCCGTTTCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGGAACACGGCAGTCGATaGTTCGTCTTCACTCGCCGG +
Preference number: 4 (lower is better)
Translates to: PVSPKERPHQSLSHSYPKEHGSR*FVFTRR
Trigger: CCGGCGAGTGAAGACGAACCATCGACTGCCGTGTTC...CTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGAAACGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp TCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGCCGCTGATGGAAGGGTaGACGGACACGTGGAGGGGT +
Preference number: 4 (lower is better)
Translates to: SPKERPHQSLSHSYPKFLPLMEG*TDTWRG
Trigger: ACCCCTCCACGTGTCCGTCCACCCTTCCATCAGCGG...CAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp GTTTCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCCCGCTGATGGAAGGGTaGACGGACACGTGGAGGGGT +
Preference number: 4 (lower is better)
Translates to: VSPKERPHQSLSHSYPKFPLMEG*TDTWRG
Trigger: ACCCCTCCACGTGTCCGTCCACCCTTCCATCAGCGG...GAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGAAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR CAA 72 bp GAAGATGGCGATGGAGTTCAGTCCTTCTTTTTCTTCTaGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGA +
Preference number: 4 (lower is better)
Translates to: EDGDGVQSFFFF*SCWARRRRPLG
Trigger: TCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp AGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATACATGGGTGGGGCGGCACTaGACGTTGCGGTTGTTGCAG +
Preference number: 4 (lower is better)
Translates to: RRTRETILSLQGPHGGNTWVGRH*TLRLLQ
Trigger: CTGCAACAACCGCAACGTGCAGTGCCGCCCCACCCA...TGTATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp CCAGCCACTTGGTGTGCTGGCCACACCCACCAAGAGGAGTCCACGTCTTCAAAATGTCTCACACTTGCATaGCAGGTGGTCTTCCAGCGT +
Preference number: 4 (lower is better)
Translates to: PATWCAGHTHQEESTSSKCLTLA*QVVFQR
Trigger: ACGCTGGAAGACCACCTGGCATGCAAGTGTGAGACA...TTTTGAAGACGTGGACTCCTCTTGGTGGGTGTGGCCAGCACACCAAGTGGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp GACAGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATTCGGGTCACAGGCCGTaGAGCTGCCACTGTCTCACA +
Preference number: 4 (lower is better)
Translates to: DRRTRETILSLQGPHGGNSGHRP*SCHCLT
Trigger: TGTGAGACAGTGGCAGCTGCACGGCCTGTGACCCGA...ATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp GACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATACAGGCAGTGTTGCCTCCCTaGCCCTACCACAGTCTCCCT +
Preference number: 4 (lower is better)
Translates to: DGRGKQYYHSKDPMGAIQAVLPP*PYHSLP
Trigger: AGGGAGACTGTGGTAGGGGCAGGGAGGCAACACTGC...CTGTATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp ATGTCCTTGTGCAGTACACACCCTGCACAACCTTACATGGCAGTCGTGGCTGGGACGTGTCAGGAGCTGTaGCAGGACCAAGACCAACAG +
Preference number: 4 (lower is better)
Translates to: MSLCSTHPAQPYMAVVAGTCQEL*QDQDQQ
Trigger: CTGTTGGTCTTGGTCCTGGCACAGCTCCTGACACGT...CCCAGCCACGACTGCCATGTAAGGTTGTGCAGGGTGTGTACTGCACAAGGACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp GGGCAGTTGCTGGAGCAGAGGACTTTGGGAAATGGAGGTCATGTGGACAGCAGTCCCATCTCTCGTCACTaGCAGAGACACGCACAAGTC +
Preference number: 4 (lower is better)
Translates to: GQLLEQRTLGNGGHVDSSPISRH*QRHAQV
Trigger: GACTTGTGCGTGTCTCTGGCAGTGACGAGAGATGGG...ACTGCTGTCCACATGACCTCCATTTCCCAAAGTCCTCTGCTCCAGCAACTGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp ATCGAGACAGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGCTAGGGAATGAAAAATaGGCGCTGGCGGCCGGAGGG +
Preference number: 4 (lower is better)
Translates to: IETDGRGKQYYHSKDPMGLGNEK*ALAAGG
Trigger: CCCTCCGGCCGCCAGCGCCCATTTTTCATTCCCTAG...CCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGTCTCGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp AGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATACACGGAAAGCGCGGAGCTaGGCACCTCAAGGCCCAAGT +
Preference number: 4 (lower is better)
Translates to: RRTRETILSLQGPHGGNTRKARS*APQGPS
Trigger: ACTTGGGCCTTGAGGTGCCCAGCTCCGCGCTTTCCG...TGTATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp AGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATACATGGCCGGCTCAGCAATaGTCAGGGAACCCAGGCTCC +
Preference number: 4 (lower is better)
Translates to: RRTRETILSLQGPHGGNTWPAQQ*SGNPGS
Trigger: GGAGCCTGGGTTCCCTGACCATTGCTGAGCCGGCCA...TGTATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp CCGCAAGCTGTCGGCACATCCTGCCAAGGCAGAAAGGTTAATTGTCACGCACGATCGATCTTTCTCACCTaGACAGGTCGCAGCTGCACC +
Preference number: 4 (lower is better)
Translates to: PQAVGTSCQGRKVNCHARSIFLT*TGRSCT
Trigger: GGTGCAGCTGCGACCTGTCCAGGTGAGAAAGATCGA...TCGTGCGTGACAATTAACCTTTCTGCCTTGGCAGGATGTGCCGACAGCTTGCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp CCATTGGCCGTCCGAATCAGGCATCGAGACAGACGGACGAGGGAAACAATATTATTCTTCTTGAGCTGCTaGGCAAGACGCCGGAGGCCG +
Preference number: 4 (lower is better)
Translates to: PLAVRIRHRDRRTRETILFFLSC*ARRRRP
Trigger: CGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAA...TAATATTGTTTCCCTCGTCCGTCTGTCTCGATGCCTGATTCGGACGGCCAATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp CCAGCCACTTGGTGTGCTGGCCACACCCACCAAGAGGAGTCCACGTCTTCAAAAAGGAGCCACCAGAGGTaGAGCTCAGAAGGATCAAAG +
Preference number: 4 (lower is better)
Translates to: PATWCAGHTHQEESTSSKRSHQR*SSEGSK
Trigger: CTTTGATCCTTCTGAGCTCCACCTCTGGTGGCTCCT...TTTTGAAGACGTGGACTCCTCTTGGTGGGTGTGGCCAGCACACCAAGTGGCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR TCA 90 bp CCGCAAGCTGTCGGCACATCCTGCCAAGGCAGAAAGGTTAATTGTCACGCACGATCTCTATCTAGGGAATaGAAAATGGGCGCTGGCGGC +
Preference number: 4 (lower is better)
Translates to: PQAVGTSCQGRKVNCHARSLSRE*KMGAGG
Trigger: GCCGCCAGCGCCCATTTTTCATTCCCTAGATAGAGA...TCGTGCGTGACAATTAACCTTTCTGCCTTGGCAGGATGTGCCGACAGCTTGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR TCA 90 bp ATGTCCTTGTGCAGTACACACCCTGCACAACCTTACATGGCAGTCGTGGCTGGGTGTCATGCGTGTGCTTaGATTTCCGGTGCTTGCCCT +
Preference number: 4 (lower is better)
Translates to: MSLCSTHPAQPYMAVVAGCHACA*ISGACP
Trigger: AGGGCAAGCACCGGAAATTCAAGCACACGCATGACA...CCCAGCCACGACTGCCATGTAAGGTTGTGCAGGGTGTGTACTGCACAAGGACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp GGGCAGTTGCTGGAGCAGAGGACTTTGGGAAATGGAGGTCATGTGGACAGCAGTTTCCAAAGTTGGCTTTaGAACGGCAGCTCGAGCACC +
Preference number: 4 (lower is better)
Translates to: GQLLEQRTLGNGGHVDSSFQSWL*NGSSST
Trigger: GGTGCTCGAGCTGCCGTTGCAAAGCCAACTTTGGAA...ACTGCTGTCCACATGACCTCCATTTCCCAAAGTCCTCTGCTCCAGCAACTGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp ACAGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATATCTCCGGGGTCTCCGTaGAGCAGGCGTTGGAGATCA +
Preference number: 4 (lower is better)
Translates to: TDGRGKQYYHSKDPMGAISPGSP*SRRWRS
Trigger: TGATCTCCAACGCCTGCTGCACGGAGACCCCGGAGA...TATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp CGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATACAGCAAATACCTCGGTGCGCGTCTTaGACTCGGCGATCATGGCCG +
Preference number: 4 (lower is better)
Translates to: RGKQYYHSKDPMGAIQQIPRCAS*TRRSWP
Trigger: CGGCCATGATCGCCGAGTGCAAGACGCGCACCGAGG...TATTTGCTGTATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp CGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATACAGCAAATAGTGGCCCAGGCCAGGTaGAGGGGAAGGAGCCCGTTT +
Preference number: 4 (lower is better)
Translates to: RGKQYYHSKDPMGAIQQIVAQAR*RGRSPF
Trigger: AAACGGGCTCCTTCCCCTGCACCTGGCCTGGGCCAC...TATTTGCTGTATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp GACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATACAGCCGTGCAGCAGGCGTTaGAGATCATCAAAGGAGCGG +
Preference number: 4 (lower is better)
Translates to: DGRGKQYYHSKDPMGAIQPCSRR*RSSKER
Trigger: CCGCTCCTTTGATGATCTCCAACGCCTGCTGCACGG...CTGTATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp GCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGCTCGCCTCCAGAGTaGGAGCGGGTCATGTTCAGG +
Preference number: 4 (lower is better)
Translates to: ATPSVSLTLLSQVLGVKGSSPPE*ERVMFR
Trigger: CCTGAACATGACCCGCTCCCACTCTGGAGGCGAGCT...TCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp CATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGTCGCAGCTGCACCTaGGTGGGGCGGCACTGCACG +
Preference number: 4 (lower is better)
Translates to: HQSLSHSYPKFLELREEDGRSCT*VGRHCT
Trigger: CGTGCAGTGCCGCCCCACCCAGGTGCAGCTGCGACC...ATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp GATGGCGATGGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCATGGTCACCCGAGTTTaGGGCGTTTTGGCTCGCTGC +
Preference number: 4 (lower is better)
Translates to: DGDGVQSFFFFLSCWARRMVTRV*GVLARC
Trigger: GCAGCGAGCCAAAACGCCCCAAACTCGGGTGACCAT...GCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp AGAAGATGGCGATGGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGCTCGCACCGTCCGAATaGTCACCCGAGTTTGGGGCG +
Preference number: 4 (lower is better)
Translates to: RRWRWSSVLLFLLELLGKLAPSE*SPEFGA
Trigger: CGCCCCAAACTCGGGTGACCATTCGGACGGTGCGAG...CTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATCTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp GTTTCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTGGGGGAAGCACCATTaGCCGTCCGAATCAGGCATC +
Preference number: 4 (lower is better)
Translates to: VSPKERPHQSLSHSYPKFWGKHH*PSESGI
Trigger: GATGCCTGATTCGGACGGCCAATGGTGCTTCCCCCA...GAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGAAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp TCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGGTGACTGGTGTTTaGGCACCGTGGGAGGGGTTT +
Preference number: 4 (lower is better)
Translates to: SPKERPHQSLSHSYPKFLEVTGV*APWEGF
Trigger: AAACCCCTCCCACGGTGCCCAAACACCAGTCACCTC...CAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp GTTTCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCAGCCACTTGGTGTGCTaGCCACACCCACCAAGAGGA +
Preference number: 4 (lower is better)
Translates to: VSPKERPHQSLSHSYPKFSHLVC*PHPPRG
Trigger: TCCTCTTGGTGGGTGTGGCCAGCACACCAAGTGGCT...GAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGAAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp CCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGTCTCCCTCCTATTTaGCCACTCCAAGCCACAGGC +
Preference number: 4 (lower is better)
Translates to: PPKSDPISLSHTLIPSSWSLPPI*PLQATG
Trigger: GCCTGTGGCTTGGAGTGGCCAAATAGGAGGGAGACT...CCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp AGACACGCACAAGTCCACGTGTCAGGAGCTGTGCCAGGACCAAGACCAACAGAGTGGAGCAGAGGACTTTaGGAAATGGAGGTCATGTGG +
Preference number: 4 (lower is better)
Translates to: RHAQVHVSGAVPGPRPTEWSRGL*EMEVMW
Trigger: CCACATGACCTCCATTTCCCAAAGTCCTCTGCTCCA...CTCTGTTGGTCTTGGTCCTGGCACAGCTCCTGACACGTGGACTTGTGCGTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp GAGCCCGTTTCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCCAGAAGGATCAAAGATaGGGAAGTGTGCAAGCAGGG +
Preference number: 4 (lower is better)
Translates to: EPVSPKERPHQSLSHSYPQKDQR*GSVQAG
Trigger: CCCTGCTTGCACACTTCCCCATCTTTGATCCTTCTG...GGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGAAACGGGCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp CACGATGCCAACAGACAGACCTCCGGCGGATTCATTTGGTTTTGTTTTGTGGTTAGGTGGGAAGGGAGGTaGGAGCTCAGATCCCACCCC +
Preference number: 4 (lower is better)
Translates to: HDANRQTSGGFIWFCFVVRWEGR*ELRSHP
Trigger: GGGGTGGGATCTGAGCTCCCACCTCCCTTCCCACCT...AACCACAAAACAAAACCAAATGAATCCGCCGGAGGTCTGTCTGTTGGCATCGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp CCCGTTTCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGGAAGGAAGCAGGTTTTaGAAGGCGGGAAGGGGGAAA +
Preference number: 4 (lower is better)
Translates to: PVSPKERPHQSLSHSYPKEGSRF*KAGRGK
Trigger: TTTCCCCCTTCCCGCCTTCCAAAACCTGCTTCCTTC...CTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGAAACGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp TTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGTCCGGCGGATTCATTTaGTTTTGTTTTGTGGTTATT +
Preference number: 4 (lower is better)
Translates to: FFLSCWARRRRPLGGDPLSGGFI*FCFVVI
Trigger: AATAACCACAAAACAAAACCAAATGAATCCGCCGGA...CAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR TCA 90 bp GTCCGAATCAGGCATCGAGACAGACGGACGAGGGAAACAATATTATCACTCCAAACCAGGGAGACGAGGTaGCTGGTGTTTGGGCACCGT +
Preference number: 4 (lower is better)
Translates to: VRIRHRDRRTRETILSLQTRETR*LVFGHR
Trigger: ACGGTGCCCAAACACCAGTCACCTCGTCTCCCTGGT...TTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGTCTCGATGCCTGATTCGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR TCA 90 bp AGAAGATGGCGATGGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGTGCCCTAGAGAGGAGTaGCTGGGATCATCTGGGGCC +
Preference number: 4 (lower is better)
Translates to: RRWRWSSVLLFLLELLGKCPREE*LGSSGA
Trigger: GGCCCCAGATGATCCCAGTCACTCCTCTCTAGGGCA...CTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATCTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp CAATGTCCTTGTGCAGTACACACCCTGCACAACCTTACATGGCAGTCGTGGCTGTTTCTCCAGTCTGTGTaGCCGTCTGTGGTCTTAGCC +
Preference number: 4 (lower is better)
Translates to: QCPCAVHTLHNLTWQSWLFLQSV*PSVVLA
Trigger: GGCTAAGACCACAGACGGGCACACAGACTGGAGAAA...CAGCCACGACTGCCATGTAAGGTTGTGCAGGGTGTGTACTGCACAAGGACATTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp GCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGATGCACTCGGCGATCATaGCCGGCTCAGCAATGGTCA +
Preference number: 4 (lower is better)
Translates to: ATPSVSLTLLSQVLGVKGCTRRS*PAQQWS
Trigger: TGACCATTGCTGAGCCGGCCATGATCGCCGAGTGCA...TCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp GTCCGAATCAGGCATCGAGACAGACGGACGAGGGAAACAATATTATCACTCCAATTCTTCTTGAGCTGCTaGGCAAGACGCCGGAGGCCG +
Preference number: 4 (lower is better)
Translates to: VRIRHRDRRTRETILSLQFFLSC*ARRRRP
Trigger: CGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAA...TTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGTCTCGATGCCTGATTCGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp CTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGAGTGCCTCCCCTCAGAGCTaGCCAGGGGTTCAGGGATCA +
Preference number: 4 (lower is better)
Translates to: LTLLSQVLGVKGRRWRWSASPQS*PGVQGS
Trigger: TGATCCCTGAACCCCTGGCCAGCTCTGAGGGGAGGC...ACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp AACAGTGCTCCCTGCATACAATGTCCTTGTGCAGTACACACCCTGCACAACCTTGGTGTTTGGGCACCGTaGGAGGGGTTTTCTCCAGTC +
Preference number: 4 (lower is better)
Translates to: NSAPCIQCPCAVHTLHNLGVWAP*EGFSPV
Trigger: GACTGGAGAAAACCCCTCCCACGGTGCCCAAACACC...AAGGTTGTGCAGGGTGTGTACTGCACAAGGACATTGTATGCAGGGAGCACTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp GCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAGGTTCAAGAGCCCCTTaGTGGAGCAGACTGAAGGGC +
Preference number: 4 (lower is better)
Translates to: ATPSVSLTLLSQVLGVKGGSRAP*WSRLKG
Trigger: GCCCTTCAGTCTGCTCCACCAAGGGGCTCTTGAACC...TCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR TCA 90 bp AAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGTTATCAGGCAGGCTATGCTaGGAGGTCCTCAGGGCTCCT +
Preference number: 4 (lower is better)
Translates to: KERPHQSLSHSYPKFLELSGRLC*EVLRAP
Trigger: AGGAGCCCTGAGGACCTCTCAGCATAGCCTGCCTGA...TAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR TCA 90 bp TCTCCAGTCTGTGTGCCCGTCTGTGGTCTTAGCCATGGAGTCCGAGGCAGCCTGCAAGGAGTCTTTGTGTaGATTAGGAAAAGGATCCTT +
Preference number: 4 (lower is better)
Translates to: SPVCVPVCGLSHGVRGSLQGVFV*IRKRIL
Trigger: AAGGATCCTTTTCCTAATTCACACAAAGACTCCTTG...CAGGCTGCCTCGGACTCCATGGCTAAGACCACAGACGGGCACACAGACTGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp GGGCAGTTGCTGGAGCAGAGGACTTTGGGAAATGGAGGTCATGTGGACAGCAGTGTGAACAGTGCTCCCTaGATACAATGTCCTTGTGCA +
Preference number: 4 (lower is better)
Translates to: GQLLEQRTLGNGGHVDSSVNSAP*IQCPCA
Trigger: TGCACAAGGACATTGTATGCAGGGAGCACTGTTCAC...ACTGCTGTCCACATGACCTCCATTTCCCAAAGTCCTCTGCTCCAGCAACTGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp CACGATGCCAACAGACAGACCTCCGGCGGATTCATTTGGTTTTGTTTTGTGGTTCCGTGCAGCAGGCGTTaGAGATCATCAAAGGAGCGG +
Preference number: 4 (lower is better)
Translates to: HDANRQTSGGFIWFCFVVPCSRR*RSSKER
Trigger: CCGCTCCTTTGATGATCTCCAACGCCTGCTGCACGG...AACCACAAAACAAAACCAAATGAATCCGCCGGAGGTCTGTCTGTTGGCATCGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp GTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGCCTTCTTAAAGATTaGCTTCTTCCGCACAATCTC +
Preference number: 4 (lower is better)
Translates to: VQSFFFFLSCWARRRRPLGLLKD*LLPHNL
Trigger: GAGATTGTGCGGAAGAAGCCAATCTTTAAGAAGGCC...CAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp CGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATACAGCAAATAGGGAGACGAGGTGACTaGTGTTTGGGCACCGTGGGA +
Preference number: 4 (lower is better)
Translates to: RGKQYYHSKDPMGAIQQIGRRGD*CLGTVG
Trigger: TCCCACGGTGCCCAAACACCAGTCACCTCGTCTCCC...TATTTGCTGTATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp CTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGAGTTCAGTCTCCCAGCCCACGAGCTaGTTTCCTAGGAGGAGCCAC +
Preference number: 4 (lower is better)
Translates to: LLSQVLGVKGRRWRWSSVSQPTS*FPRRSH
Trigger: GTGGCTCCTCCTAGGAAACCAGCTCGTGGGCTGGGA...GACTGAACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp GCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGATTTTTCTTCTTGAGCTaGTGGGCAAGACGCCGGAGG +
Preference number: 4 (lower is better)
Translates to: ATPSVSLTLLSQVLGVKGFFFLS*WARRRR
Trigger: CCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAA...TCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp CTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGAGTTCAGTCTGCACTCGGCGATCATaGCCGGCTCAGCAATGGTCA +
Preference number: 4 (lower is better)
Translates to: LLSQVLGVKGRRWRWSSVCTRRS*PAQQWS
Trigger: TGACCATTGCTGAGCCGGCCATGATCGCCGAGTGCA...GACTGAACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp CTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGAGTCACTTGCATGCCAGGTaGTCTTCCAGCGTCACCGTG +
Preference number: 4 (lower is better)
Translates to: LTLLSQVLGVKGRRWRWSHLHAR*SSSVTV
Trigger: CACGGTGACGCTGGAAGACCACCTGGCATGCAAGTG...ACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp CTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGAGTTCAGTCCACTTGCATGCCAGGTaGTCTTCCAGCGTCACCGTG +
Preference number: 4 (lower is better)
Translates to: LLSQVLGVKGRRWRWSSVHLHAR*SSSVTV
Trigger: CACGGTGACGCTGGAAGACCACCTGGCATGCAAGTG...GACTGAACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp CTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGAGTGAGTTTGGGGCGTTTTaGCTCGCTGCTCCTGGGAAC +
Preference number: 4 (lower is better)
Translates to: LTLLSQVLGVKGRRWRWSEFGAF*LAAPGN
Trigger: GTTCCCAGGAGCAGCGAGCCAAAACGCCCCAAACTC...ACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp GGGCAGTTGCTGGAGCAGAGGACTTTGGGAAATGGAGGTCATGTGGACAGCAGTGTTAAGGGAAGAAGATaGCGATGGAGTTCAGTCCTT +
Preference number: 4 (lower is better)
Translates to: GQLLEQRTLGNGGHVDSSVKGRR*RWSSVL
Trigger: AAGGACTGAACTCCATCGCCATCTTCTTCCCTTAAC...ACTGCTGTCCACATGACCTCCATTTCCCAAAGTCCTCTGCTCCAGCAACTGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp GACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATACAGGAGGACTTTGGGAAATaGAGGTCATGTGGACAGCAG +
Preference number: 4 (lower is better)
Translates to: DGRGKQYYHSKDPMGAIQEDFGK*RSCGQQ
Trigger: CTGCTGTCCACATGACCTCCATTTCCCAAAGTCCTC...CTGTATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR TCA 90 bp CAATGTCCTTGTGCAGTACACACCCTGCACAACCTTACATGGCAGTCGTGGCTGGCTTTATCTATGATGTaGACAGTGCTCCCTGCATAC +
Preference number: 4 (lower is better)
Translates to: QCPCAVHTLHNLTWQSWLALSMM*TVLPAY
Trigger: GTATGCAGGGAGCACTGTTCACATCATAGATAAAGC...CAGCCACGACTGCCATGTAAGGTTGTGCAGGGTGTGTACTGCACAAGGACATTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp CAATGTCCTTGTGCAGTACACACCCTGCACAACCTTACATGGCAGTCGTGGCTGGCGTATGTATGTGTGTaGGCGCAAAGTATCTCTATC +
Preference number: 4 (lower is better)
Translates to: QCPCAVHTLHNLTWQSWLAYVCV*AQSISI
Trigger: GATAGAGATACTTTGCGCGCACACACATACATACGC...CAGCCACGACTGCCATGTAAGGTTGTGCAGGGTGTGTACTGCACAAGGACATTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp AGACAGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAAAGGACAAGAGGAAAATaGAGGGTGGAGGTAGAGAGA +
Preference number: 4 (lower is better)
Translates to: RQTDEGNNIITPRTPWGQRTRGK*RVEVER
Trigger: TCTCTCTACCTCCACCCTGCATTTTCCTCTTGTCCT...TTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR GCA 90 bp AACAGTGCTCCCTGCATACAATGTCCTTGTGCAGTACACACCCTGCACAACCTTGTGCAGTACACACCCTaGACAACCTTACATGGCAGT +
Preference number: 4 (lower is better)
Translates to: NSAPCIQCPCAVHTLHNLVQYTP*TTLHGS
Trigger: ACTGCCATGTAAGGTTGTGCAGGGTGTGTACTGCAC...AAGGTTGTGCAGGGTGTGTACTGCACAAGGACATTGTATGCAGGGAGCACTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp AGACAGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAACTTACATGGCAGTCGTaGCTGGGTTGGAATATGATG +
Preference number: 4 (lower is better)
Translates to: RQTDEGNNIITPRTPWGQLTWQS*LGWNMM
Trigger: CATCATATTCCAACCCAGCCACGACTGCCATGTAAG...TTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR TCA 90 bp CGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATACAGCAAATACCTTCTTTTTCTTCTTaGGCTGCTGGGCAAGACGCC +
Preference number: 4 (lower is better)
Translates to: RGKQYYHSKDPMGAIQQIPSFSS*AAGQDA
Trigger: GGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGG...TATTTGCTGTATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp CTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGAGTTGTCTCACACTTGCATaGCAGGTGGTCTTCCAGCGT +
Preference number: 4 (lower is better)
Translates to: LTLLSQVLGVKGRRWRWSCLTLA*QVVFQR
Trigger: ACGCTGGAAGACCACCTGGCATGCAAGTGTGAGACA...ACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp CTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGACCACTGTCTCACACTTaGATGCCAGGTGGTCTTCCA +
Preference number: 4 (lower is better)
Translates to: LSHSYPKFLELREEDGDGPLSHT*MPGGLP
Trigger: TGGAAGACCACCTGGCATGCAAGTGTGAGACAGTGG...TCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp AAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGTTACCACTGTCTCACACTTaGATGCCAGGTGGTCTTCCA +
Preference number: 4 (lower is better)
Translates to: KERPHQSLSHSYPKFLELPLSHT*MPGGLP
Trigger: TGGAAGACCACCTGGCATGCAAGTGTGAGACAGTGG...TAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp AGAAGATGGCGATGGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGAGTGCCGTCTTGTCATaGGTGTGCTTGAATTTCCGG +
Preference number: 4 (lower is better)
Translates to: RRWRWSSVLLFLLELLGKSAVLS*VCLNFR
Trigger: CCGGAAATTCAAGCACACGCATGACAAGACGGCACT...CTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATCTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp AAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAATTGTCACGCACGATaGCAACAGACAGACCTCCGG +
Preference number: 4 (lower is better)
Translates to: KERPHQSLSHSYPKFLELNCHAR*QQTDLR
Trigger: CCGGAGGTCTGTCTGTTGGCATCGTGCGTGACAATT...TAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp AGACAGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAAGTTAAGGGAAGAAGATaGCGATGGAGTTCAGTCCTT +
Preference number: 4 (lower is better)
Translates to: RQTDEGNNIITPRTPWGQVKGRR*RWSSVL
Trigger: AAGGACTGAACTCCATCGCCATCTTCTTCCCTTAAC...TTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
3UTR CAA 72 bp CCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTaGGAGTTAAGGGAAGAAGATGGCGATGGAGTTCAG +
Preference number: 4 (lower is better)
Translates to: PHQSLSHSYPKF*ELREEDGDGVQ
Trigger: CTGAACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp GCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAACTTTTTCCAAAGTTaGCTTTGCAACGGCAGCTCG +
Preference number: 4 (lower is better)
Translates to: ATPSVSLTLLSQVLGVKGNFFQS*LCNGSS
Trigger: CGAGCTGCCGTTGCAAAGCCAACTTTGGAAAAAGTT...TCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp GTTTCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCGGAAGAAGATGGCGATaGAGTTCAGTCCTTCTTTTT +
Preference number: 4 (lower is better)
Translates to: VSPKERPHQSLSHSYPKFGRRWR*SSVLLF
Trigger: AAAAAGAAGGACTGAACTCCATCGCCATCTTCTTCC...GAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp CTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGAGTCTTGTCATGCGTGTaGTTGAATTTCCGGTGCTTG +
Preference number: 4 (lower is better)
Translates to: LSHSYPKFLELREEDGDGVLSCV*LNFRCL
Trigger: CAAGCACCGGAAATTCAAGCACACGCATGACAAGAC...TCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CCA 90 bp GCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAGGAAGAAGATGGCGATaGAGTTCAGTCCTTCTTTTT +
Preference number: 4 (lower is better)
Translates to: ATPSVSLTLLSQVLGVKGGRRWR*SSVLLF
Trigger: AAAAAGAAGGACTGAACTCCATCGCCATCTTCTTCC...TCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp CATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGCTGTCGGCACATCCTaGCAAGGCAGAAAGGTTAAT +
Preference number: 4 (lower is better)
Translates to: HQSLSHSYPKFLELREEDAVGTS*QGRKVN
Trigger: ATTAACCTTTCTGCCTTGGCAGGATGTGCCGACAGC...ATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CCA 90 bp CTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGAGTGGCCTTCTTAAAGATTaGCTTCTTCCGCACAATCTC +
Preference number: 4 (lower is better)
Translates to: LTLLSQVLGVKGRRWRWSGLLKD*LLPHNL
Trigger: GAGATTGTGCGGAAGAAGCCAATCTTTAAGAAGGCC...ACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR GCA 90 bp CATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATACATCTCACCATTCCTaGTCAGTCAGTCTCTCTCTC +
Preference number: 4 (lower is better)
Translates to: HQSLSHSYPKFLELREEDTSHHS*SVSLSL
Trigger: GAGAGAGAGACTGACTGAGCAGGAATGGTGAGATGT...ATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000381551.8
CDS GCA 90 bp CCGCTCGCCGCTCTGGGCGTCCTCTGCGGGCTGCGGGCTGCGAGCTaGGAGCTGCGAGCTGCGGCTGCTCCGGTTTTCTCTTTGCAGCGA +
Preference number: 5 (lower is better)
Translates to: PLAALGVLCGLRAAS*ELRAAAAPVFSLQR
Trigger: TCGCTGCAAAGAGAAAACCGGAGCAGCCGCAGCTCGCAGCTCGCAGCTCGCAGCCCGCAGCCCGCAGAGGACGCCCAGAGCGGCGAGCGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS GCA 90 bp CCGCTCTGGGCGTCCTCTGCGGGCTGCGGGCTGCGAGCTGCGAGCTaGGAGCTGCGGCTGCTCCGGTTTTCTCTTTGCAGCGAGGCTGGA +
Preference number: 5 (lower is better)
Translates to: PLWASSAGCGLRAAS*ELRLLRFSLCSEAG
Trigger: TCCAGCCTCGCTGCAAAGAGAAAACCGGAGCAGCCGCAGCTCGCAGCTCGCAGCTCGCAGCCCGCAGCCCGCAGAGGACGCCCAGAGCGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS GCA 90 bp GTCGCAGCTGCACCTGGGTGGGGCGGCACTGCACGTTGCGGTTGTTaGAGCAGCCGGAGCAGCGCTGCACCTCCACACAGGGCGGCCACA +
Preference number: 5 (lower is better)
Translates to: VAAAPGWGGTARCGC*SSRSSAAPPHRAAT
Trigger: TGTGGCCGCCCTGTGTGGAGGTGCAGCGCTGCTCCGGCTGCTGCAACAACCGCAACGTGCAGTGCCGCCCCACCCAGGTGCAGCTGCGAC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS-3UTR CAA 90 bp CCCAGCCCACGAGCTGGTTTCCTAGGAGGAGCCACCAGAGGTGGAGCTCAGAAGGGGCGGCACTGCACGTaGCGGTTGTTGCAGCAGCCG +
Preference number: 5 (lower is better)
Translates to: PSPRAGFLGGATRGGAQKGRHCT*RLLQQP
Trigger: CGGCTGCTGCAACAACCGCAACGTGCAGTGCCGCCC...CTTCTGAGCTCCACCTCTGGTGGCTCCTCCTAGGAAACCAGCTCGTGGGCTGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS TCA 90 bp CCACACAGGGCGGCCACACCAGGAAGTTGGCGTTGGTGCGGTCTATaGGGCGCCGGGAGATCTCGAACACCTCGGTGCGCGTCTTGCACT +
Preference number: 5 (lower is better)
Translates to: PHRAATPGSWRWCGL*GAGRSRTPRCASCT
Trigger: AGTGCAAGACGCGCACCGAGGTGTTCGAGATCTCCCGGCGCCTCATAGACCGCACCAACGCCAACTTCCTGGTGTGGCCGCCCTGTGTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS-3UTR CAA 90 bp TGGGGGAAGCACCATTGGCCGTCCGAATCAGGCATCGAGACAGACGGACGAGGGACCTCGGTGCGCGTCTaGCACTCGGCGATCATGGCC +
Preference number: 5 (lower is better)
Translates to: WGKHHWPSESGIETDGRGTSVRV*HSAIMA
Trigger: GGCCATGATCGCCGAGTGCAAGACGCGCACCGAGGT...CCCTCGTCCGTCTGTCTCGATGCCTGATTCGGACGGCCAATGGTGCTTCCCCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS CCA 90 bp GGGAGATCTCGAACACCTCGGTGCGCGTCTTGCACTCGGCGATCATaGCCGGCTCAGCAATGGTCAGGGAACCCAGGCTCCTTCTTCCAC +
Preference number: 5 (lower is better)
Translates to: GRSRTPRCASCTRRS*PAQQWSGNPGSFFH
Trigger: GTGGAAGAAGGAGCCTGGGTTCCCTGACCATTGCTGAGCCGGCCATGATCGCCGAGTGCAAGACGCGCACCGAGGTGTTCGAGATCTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS-3UTR CAA 90 bp CCCAGCCCACGAGCTGGTTTCCTAGGAGGAGCCACCAGAGGTGGAGCTCAGAAGACCAGGAAGTTGGCGTaGGTGCGGTCTATGAGGCGC +
Preference number: 5 (lower is better)
Translates to: PSPRAGFLGGATRGGAQKTRKLA*VRSMRR
Trigger: GCGCCTCATAGACCGCACCAACGCCAACTTCCTGGT...CTTCTGAGCTCCACCTCTGGTGGCTCCTCCTAGGAAACCAGCTCGTGGGCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CAA 90 bp TCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGTGCACGTTGCGGTTGTaGCAGCAGCCGGAGCAGCGC +
Preference number: 5 (lower is better)
Translates to: SVLLFLLELLGKTPEAAGCTLRL*QQPEQR
Trigger: GCGCTGCTCCGGCTGCTGCAACAACCGCAACGTGCA...CCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp ACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGAAGGGTGGACGGACACGTGTCCTTCAGTGCCGTCTaGTCATGCGTGTGCTTGAAT +
Preference number: 5 (lower is better)
Translates to: TPEAAGRRPADGRVDGHVSFSAV*SCVCLN
Trigger: ATTCAAGCACACGCATGACAAGACGGCACTGAAGGA...CACGTGTCCGTCCACCCTTCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp TCTCCAGTCTGTGTGCCCGTCTGTGGTCTTAGCCATGGAGTCCGAGGCAGCCTGCGAGGTGACTGGTGTTaGGGCACCGTGGGAGGGGTT +
Preference number: 5 (lower is better)
Translates to: SPVCVPVCGLSHGVRGSLRGDWC*GTVGGV
Trigger: AACCCCTCCCACGGTGCCCAAACACCAGTCACCTCG...CAGGCTGCCTCGGACTCCATGGCTAAGACCACAGACGGGCACACAGACTGGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS CCA 90 bp AGGCTCCTTCTTCCACGAGCCAAGCTCTCCAGCTCGCCTCCAGAGTaGGAGCGGGTCATGTTCAGGTCCAACTCGGCCCCATCTTCCTCT +
Preference number: 5 (lower is better)
Translates to: RLLLPRAKLSSSPPE*ERVMFRSNSAPSSS
Trigger: AGAGGAAGATGGGGCCGAGTTGGACCTGAACATGACCCGCTCCCACTCTGGAGGCGAGCTGGAGAGCTTGGCTCGTGGAAGAAGGAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS-3UTR CAA 90 bp GAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGAAGGAAACTTTTTCCAAAGTaGGCTTTGCAACGGCAGCTC +
Preference number: 5 (lower is better)
Translates to: ELLGKTPEAAGRRPADGRKLFPK*ALQRQL
Trigger: GAGCTGCCGTTGCAAAGCCAACTTTGGAAAAAGTTT...CCTTCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CAA 90 bp TCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGGGCCACACCAGGAAGTaGGCGTTGGTGCGGTCTATG +
Preference number: 5 (lower is better)
Translates to: SVLLFLLELLGKTPEAAGGHTRK*ALVRSM
Trigger: CATAGACCGCACCAACGCCAACTTCCTGGTGTGGCC...CCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp GAGCCCGTTTCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCCACTGCACGTTGCGGTaGTTGCAGCAGCCGGAGCAG +
Preference number: 5 (lower is better)
Translates to: EPVSPKERPHQSLSHSYPHCTLR*LQQPEQ
Trigger: CTGCTCCGGCTGCTGCAACAACCGCAACGTGCAGTG...GGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGAAACGGGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS GCA 90 bp GCTTCGGGTCACAGGCCGTGCAGCTGCCACTGTCTCACACTTGCATaGCAGGTGGTCTTCCAGCGTCACCGTGGCCTTCTTAAAGATTGG +
Preference number: 5 (lower is better)
Translates to: ASGHRPCSCHCLTLA*QVVFQRHRGLLKDW
Trigger: CCAATCTTTAAGAAGGCCACGGTGACGCTGGAAGACCACCTGGCATGCAAGTGTGAGACAGTGGCAGCTGCACGGCCTGTGACCCGAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS CCA 90 bp AACTCGGCCCCATCTTCCTCTCCGGGGTCTCCGTGCAGCAGGCGTTaGAGATCATCAAAGGAGCGGATCGAGTGGTCACTCAGCATCTCA +
Preference number: 5 (lower is better)
Translates to: NSAPSSSPGSPCSRR*RSSKERIEWSLSIS
Trigger: TGAGATGCTGAGTGACCACTCGATCCGCTCCTTTGATGATCTCCAACGCCTGCTGCACGGAGACCCCGGAGAGGAAGATGGGGCCGAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS CCA 90 bp GTCTCCTGCCCCCTAGGGCCATTAGCAAAGCCAGAGGAAGCTGGATaGCAAAGGGCAGTGGGGCCCTTCACTCTTTCCCGGAAGAAGTGT +
Preference number: 5 (lower is better)
Translates to: VSCPLGPLAKPEEAG*QRAVGPFTLSRKKC
Trigger: ACACTTCTTCCGGGAAAGAGTGAAGGGCCCCACTGCCCTTTGCCATCCAGCTTCCTCTGGCTTTGCTAATGGCCCTAGGGGGCAGGAGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000440375.1
CDS-3UTR CAA 90 bp GTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGACCAGGAAGTTGGCGTaGGTGCGGTCTATGAGGCGC +
Preference number: 5 (lower is better)
Translates to: VQSFFFFLSCWARRRRPLTRKLA*VRSMRR
Trigger: GCGCCTCATAGACCGCACCAACGCCAACTTCCTGGT...CAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp GATGGCGATGGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCGGGCGGCACTGCACGTaGCGGTTGTTGCAGCAGCCG +
Preference number: 5 (lower is better)
Translates to: DGDGVQSFFFFLSCWARRGRHCT*RLLQQP
Trigger: CGGCTGCTGCAACAACCGCAACGTGCAGTGCCGCCC...GCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp GGAAGCACCATTGGCCGTCCGAATCAGGCATCGAGACAGACGGACGAGGGAAACAATGGTCACCCGAGTTaGGGGCGTTTTGGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: GSTIGRPNQASRQTDEGNNGHPS*GRFGSL
Trigger: CAGCGAGCCAAAACGCCCCAAACTCGGGTGACCATT...GTTTCCCTCGTCCGTCTGTCTCGATGCCTGATTCGGACGGCCAATGGTGCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp TCTGTGTGCCCGTCTGTGGTCTTAGCCATGGAGTCCGAGGCAGCCTGGCCTGCCTCCTTCTTTTTCTTCTaGAGCTGCTGGGCAAGACGC +
Preference number: 5 (lower is better)
Translates to: SVCPSVVLAMESEAAWPASFFFF*SCWARR
Trigger: GCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGA...GGCAGGCCAGGCTGCCTCGGACTCCATGGCTAAGACCACAGACGGGCACACAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS GCA 90 bp CACACTCTCCTGCCGATGCCCCTAGGCTCCAAGGGTCTCCTTCAGTaGCGTCTTGTCATGCGTGTGCTTGAATTTCCGGTGCTTGCCCTT +
Preference number: 5 (lower is better)
Translates to: HTLLPMPLGSKGLLQ*RLVMRVLEFPVLAL
Trigger: AAGGGCAAGCACCGGAAATTCAAGCACACGCATGACAAGACGGCACTGAAGGAGACCCTTGGAGCCTAGGGGCATCGGCAGGAGAGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp TCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGACCTCGGTGCGCGTCTaGCACTCGGCGATCATGGCC +
Preference number: 5 (lower is better)
Translates to: SPKERPHQSLSHSYPKFLTSVRV*HSAIMA
Trigger: GGCCATGATCGCCGAGTGCAAGACGCGCACCGAGGT...CAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp ACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATACAGCAGGGCACCCAGCCACTaGGTGTGCTGGCCACACCCA +
Preference number: 5 (lower is better)
Translates to: TDEGNNIITPRTPWGQYSRAPSH*VCWPHP
Trigger: TGGGTGTGGCCAGCACACCAAGTGGCTGGGTGCCCT...GCTGTATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CAA 90 bp CCCAGCCCACGAGCTGGTTTCCTAGGAGGAGCCACCAGAGGTGGAGCTCAGAAGCTGCATACAATGTCCTaGTGCAGTACACACCCTGCA +
Preference number: 5 (lower is better)
Translates to: PSPRAGFLGGATRGGAQKLHTMS*CSTHPA
Trigger: TGCAGGGTGTGTACTGCACAAGGACATTGTATGCAG...CTTCTGAGCTCCACCTCTGGTGGCTCCTCCTAGGAAACCAGCTCGTGGGCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CAA 90 bp CTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGGGAGGAGACCCGCTGATGGAGTCCACAAGGAGTCTTaGTGTGAATTAGGAAAAGGA +
Preference number: 5 (lower is better)
Translates to: LELLGKTPEAAGRRPADGVHKES*CELGKG
Trigger: TCCTTTTCCTAATTCACACAAAGACTCCTTGTGGAC...TCCATCAGCGGGTCTCCTCCCAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CAA 90 bp GGGCAGTTGCTGGAGCAGAGGACTTTGGGAAATGGAGGTCATGTGGACAGCAGTATGTGGACAGCAGTGTaGCCTCCCTGCCCCTACCAC +
Preference number: 5 (lower is better)
Translates to: GQLLEQRTLGNGGHVDSSMWTAV*PPCPYH
Trigger: GTGGTAGGGGCAGGGAGGCAACACTGCTGTCCACAT...ACTGCTGTCCACATGACCTCCATTTCCCAAAGTCCTCTGCTCCAGCAACTGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS CCA 90 bp GTCACAGGCCGTGCAGCTGCCACTGTCTCACACTTGCATGCCAGGTaGTCTTCCAGCGTCACCGTGGCCTTCTTAAAGATTGGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: VTGRAAATVSHLHAR*SSSVTVAFLKIGFF
Trigger: GAAGAAGCCAATCTTTAAGAAGGCCACGGTGACGCTGGAAGACCACCTGGCATGCAAGTGTGAGACAGTGGCAGCTGCACGGCCTGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp CAATGTCCTTGTGCAGTACACACCCTGCACAACCTTACATGGCAGTCGTGGCTGGGCCACACCAGGAAGTaGGCGTTGGTGCGGTCTATG +
Preference number: 5 (lower is better)
Translates to: QCPCAVHTLHNLTWQSWLGHTRK*ALVRSM
Trigger: CATAGACCGCACCAACGCCAACTTCCTGGTGTGGCC...CAGCCACGACTGCCATGTAAGGTTGTGCAGGGTGTGTACTGCACAAGGACATTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CAA 90 bp GACAGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATCACTGCACGTTGCGGTaGTTGCAGCAGCCGGAGCAG +
Preference number: 5 (lower is better)
Translates to: DRRTRETILSLQGPHGGNHCTLR*LQQPEQ
Trigger: CTGCTCCGGCTGCTGCAACAACCGCAACGTGCAGTG...ATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp GGGCAGTTGCTGGAGCAGAGGACTTTGGGAAATGGAGGTCATGTGGACAGCAGTGCCACTGTCTCACACTaGCATGCCAGGTGGTCTTCC +
Preference number: 5 (lower is better)
Translates to: GQLLEQRTLGNGGHVDSSATVSH*HARWSS
Trigger: GGAAGACCACCTGGCATGCAAGTGTGAGACAGTGGC...ACTGCTGTCCACATGACCTCCATTTCCCAAAGTCCTCTGCTCCAGCAACTGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CAA 90 bp GTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGACGCCGGAGGCCGCTGTTGTCATGCGTGTGCTaGAATTTCCGGTGCTTGCCC +
Preference number: 5 (lower is better)
Translates to: VQSFFFFLSCWARRRRPLLSCVC*NFRCLP
Trigger: GGGCAAGCACCGGAAATTCAAGCACACGCATGACAA...CAGCGGCCTCCGGCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS CCA 90 bp GCATGCCAGGTGGTCTTCCAGCGTCACCGTGGCCTTCTTAAAGATTaGCTTCTTCCGCACAATCTCGATCTTTCTCACCTGGACAGGTCG +
Preference number: 5 (lower is better)
Translates to: ACQVVFQRHRGLLKD*LLPHNLDLSHLDRS
Trigger: CGACCTGTCCAGGTGAGAAAGATCGAGATTGTGCGGAAGAAGCCAATCTTTAAGAAGGCCACGGTGACGCTGGAAGACCACCTGGCATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp GACAGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATTCCGTGCAGCAGGCGTaGGAGATCATCAAAGGAGCG +
Preference number: 5 (lower is better)
Translates to: DRRTRETILSLQGPHGGNSVQQA*EIIKGA
Trigger: CGCTCCTTTGATGATCTCCAACGCCTGCTGCACGGA...ATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp CTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGAGTTGCACGTTGCGGTTGTaGCAGCAGCCGGAGCAGCGC +
Preference number: 5 (lower is better)
Translates to: LTLLSQVLGVKGRRWRWSCTLRL*QQPEQR
Trigger: GCGCTGCTCCGGCTGCTGCAACAACCGCAACGTGCA...ACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp AGACAGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAAGCCACTGTCTCACACTaGCATGCCAGGTGGTCTTCC +
Preference number: 5 (lower is better)
Translates to: RQTDEGNNIITPRTPWGQATVSH*HARWSS
Trigger: GGAAGACCACCTGGCATGCAAGTGTGAGACAGTGGC...TTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCTGTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp AGAAGATGGCGATGGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGGAGGCCTCCCCCAAGTaGCAGGCCTGCGTGTATGTG +
Preference number: 5 (lower is better)
Translates to: RRWRWSSVLLFLLELLGKEASPK*QACVYV
Trigger: CACATACACGCAGGCCTGCAACTTGGGGGAGGCCTC...CTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATCTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CAA 90 bp CAAGGACCCCATGGGGGCAATACAGCAAATACCATATTAAATAACCCTGCCCACGTGGGGGAAGCACCATaGGCCGTCCGAATCAGGCAT +
Preference number: 5 (lower is better)
Translates to: QGPHGGNTANTILNNPAHVGEAP*AVRIRH
Trigger: ATGCCTGATTCGGACGGCCAATGGTGCTTCCCCCAC...GTGGGCAGGGTTATTTAATATGGTATTTGCTGTATTGCCCCCATGGGGTCCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp AGACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATACACAGTCTCCCTCCTATTaGGCCACTCCAAGCCACAGG +
Preference number: 5 (lower is better)
Translates to: RRTRETILSLQGPHGGNTQSPSY*ATPSHR
Trigger: CCTGTGGCTTGGAGTGGCCAAATAGGAGGGAGACTG...TGTATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CAA 90 bp CTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGAGTGCTCCGGTTTTCTCTTaGCAGCGAGGCTGGAGGGTG +
Preference number: 5 (lower is better)
Translates to: LTLLSQVLGVKGRRWRWSAPVFS*QRGWRV
Trigger: CACCCTCCAGCCTCGCTGCAAAGAGAAAACCGGAGC...ACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CAA 90 bp CCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTTGGTCCTTCAGTGCCGTCTaGTCATGCGTGTGCTTGAAT +
Preference number: 5 (lower is better)
Translates to: PPKSDPISLSHTLIPSSWSFSAV*SCVCLN
Trigger: ATTCAAGCACACGCATGACAAGACGGCACTGAAGGA...CCAAGAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp CGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATACAGCAAATAGTGGGGGAAGCACCATaGGCCGTCCGAATCAGGCAT +
Preference number: 5 (lower is better)
Translates to: RGKQYYHSKDPMGAIQQIVGEAP*AVRIRH
Trigger: ATGCCTGATTCGGACGGCCAATGGTGCTTCCCCCAC...TATTTGCTGTATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp CTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGAAATGGTCACCCGAGTTaGGGGCGTTTTGGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: LSHSYPKFLELREEDGDGNGHPS*GRFGSL
Trigger: CAGCGAGCCAAAACGCCCCAAACTCGGGTGACCATT...TCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp GTTTCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTCCTTCTTTTTCTTCTaGAGCTGCTGGGCAAGACGC +
Preference number: 5 (lower is better)
Translates to: VSPKERPHQSLSHSYPKFSFFFF*SCWARR
Trigger: GCGTCTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGA...GAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp AGAAGATGGCGATGGAGTTCAGTCCTTCTTTTTCTTCTTGAGCTGCTGGGCAAGTTTCCAAAGTTGGCTTaGCAACGGCAGCTCGAGCAC +
Preference number: 5 (lower is better)
Translates to: RRWRWSSVLLFLLELLGKFPKLA*QRQLEH
Trigger: GTGCTCGAGCTGCCGTTGCAAAGCCAACTTTGGAAA...CTTGCCCAGCAGCTCAAGAAGAAAAAGAAGGACTGAACTCCATCGCCATCTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CAA 90 bp CTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGAGCAGTCGTGGCTGGGTaGGAATATGATGAGCAGGTC +
Preference number: 5 (lower is better)
Translates to: LSHSYPKFLELREEDGDGAVVAG*EYDEQV
Trigger: GACCTGCTCATCATATTCCAACCCAGCCACGACTGC...TCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CAA 90 bp CCCGTTTCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGCTCCGGCGGATTCATTaGGTTTTGTTTTGTGGTTAT +
Preference number: 5 (lower is better)
Translates to: PVSPKERPHQSLSHSYPKLRRIH*VLFCGY
Trigger: ATAACCACAAAACAAAACCAAATGAATCCGCCGGAG...CTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGAAACGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CAA 90 bp CCATTGGCCGTCCGAATCAGGCATCGAGACAGACGGACGAGGGAAACAATATTAGCCGGCTTAGCTTTTTaGCAACATTTTCTGGAAAGG +
Preference number: 5 (lower is better)
Translates to: PLAVRIRHRDRRTRETILAGLAF*QHFLER
Trigger: CCTTTCCAGAAAATGTTGCAAAAAAGCTAAGCCGGC...TAATATTGTTTCCCTCGTCCGTCTGTCTCGATGCCTGATTCGGACGGCCAATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CAA 90 bp CTCTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGATTGTCATGCGTGTGCTaGAATTTCCGGTGCTTGCCC +
Preference number: 5 (lower is better)
Translates to: LSHSYPKFLELREEDGDGLSCVC*NFRCLP
Trigger: GGGCAAGCACCGGAAATTCAAGCACACGCATGACAA...TCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp CTCACACTCTTATCCCAAGTTCTTGGAGTTAAGGGAAGAAGATGGCGATGGAGTCTGGAGCAGAGGACTTaGGGAAATGGAGGTCATGTG +
Preference number: 5 (lower is better)
Translates to: LTLLSQVLGVKGRRWRWSLEQRT*GNGGHV
Trigger: CACATGACCTCCATTTCCCAAAGTCCTCTGCTCCAG...ACTCCATCGCCATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGAGTGTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS-3UTR CAA 90 bp GACGGACGAGGGAAACAATATTATCACTCCAAGGACCCCATGGGGGCAATACAGTCTTATCCCAAGTTCTaGGAGTTAAGGGAAGAAGAT +
Preference number: 5 (lower is better)
Translates to: DGRGKQYYHSKDPMGAIQSYPKF*ELREED
Trigger: ATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGA...CTGTATTGCCCCCATGGGGTCCTTGGAGTGATAATATTGTTTCCCTCGTCCGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS-3UTR CAA 90 bp GTTTCCCCCAAAGAGCGACCCCATCAGTCTCTCTCACACTCTTATCCCAAGTTCTCTTATCCCAAGTTCTaGGAGTTAAGGGAAGAAGAT +
Preference number: 5 (lower is better)
Translates to: VSPKERPHQSLSHSYPKFSYPKF*ELREED
Trigger: ATCTTCTTCCCTTAACTCCAAGAACTTGGGATAAGA...GAACTTGGGATAAGAGTGTGAGAGAGACTGATGGGGTCGCTCTTTGGGGGAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS GCA 72 bp CCGTCTGCCCGCCCGCTCGCCGCTCTGGGCGTCCTCTaGGGGCTGCGGGCTGCGAGCTGCGAGCTGCGAGCT +
Preference number: 6 (lower is better)
Translates to: PSARPLAALGVL*GLRAASCELRA
Trigger: AGCTCGCAGCTCGCAGCTCGCAGCCCGCAGCCCGCAGAGGACGCCCAGAGCGGCGAGCGGGCGGGCAGACGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS GCA 72 bp CGACAGGTGGACGCGGCGCGAGTCCGTCGGTCCGTCTaGCCGCCCGCTCGCCGCTCTGGGCGTCCTCTGCGG +
Preference number: 6 (lower is better)
Translates to: RQVDAARVRRSV*PPARRSGRPLR
Trigger: CCGCAGAGGACGCCCAGAGCGGCGAGCGGGCGGGCAGACGGACCGACGGACTCGCGCCGCGTCCACCTGTCG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS GCA 72 bp GCGTCCTCTGCGGGCTGCGGGCTGCGAGCTGCGAGCTaGGAGCTGCGGCTGCTCCGGTTTTCTCTTTGCAGC +
Preference number: 6 (lower is better)
Translates to: ASSAGCGLRAAS*ELRLLRFSLCS
Trigger: GCTGCAAAGAGAAAACCGGAGCAGCCGCAGCTCGCAGCTCGCAGCTCGCAGCCCGCAGCCCGCAGAGGACGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS GCA 72 bp GCACCTGGGTGGGGCGGCACTGCACGTTGCGGTTGTTaGAGCAGCCGGAGCAGCGCTGCACCTCCACACAGG +
Preference number: 6 (lower is better)
Translates to: APGWGGTARCGC*SSRSSAAPPHR
Trigger: CCTGTGTGGAGGTGCAGCGCTGCTCCGGCTGCTGCAACAACCGCAACGTGCAGTGCCGCCCCACCCAGGTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS CCA 72 bp GGCTGCGTCGCGAACCAGCCGAGGCGTCTAGCCGTGTaGGGGCGCCCAGGGGACTCCAACCTCCAAGAGGAA +
Preference number: 6 (lower is better)
Translates to: GCVANQPRRLAV*GRPGDSNLQEE
Trigger: TTCCTCTTGGAGGTTGGAGTCCCCTGGGCGCCCCCACACGGCTAGACGCCTCGGCTGGTTCGCGACGCAGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS CAA 72 bp CCGGCGGACTCGCACCGTCCGAATGGTCACCCGAGTTaGGGGCGTTTTGGCTCGCTGCTCCTGGGAACCCCC +
Preference number: 6 (lower is better)
Translates to: PADSHRPNGHPS*GRFGSLLLGTP
Trigger: GGGGGTTCCCAGGAGCAGCGAGCCAAAACGCCCCAAACTCGGGTGACCATTCGGACGGTGCGAGTCCGCCGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS TCA 72 bp GCGGCCACACCAGGAAGTTGGCGTTGGTGCGGTCTATaGGGCGCCGGGAGATCTCGAACACCTCGGTGCGCG +
Preference number: 6 (lower is better)
Translates to: AATPGSWRWCGL*GAGRSRTPRCA
Trigger: CGCGCACCGAGGTGTTCGAGATCTCCCGGCGCCTCATAGACCGCACCAACGCCAACTTCCTGGTGTGGCCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS GCA 72 bp GGCGCCGGGAGATCTCGAACACCTCGGTGCGCGTCTTaGACTCGGCGATCATGGCCGGCTCAGCAATGGTCA +
Preference number: 6 (lower is better)
Translates to: GAGRSRTPRCAS*TRRSWPAQQWS
Trigger: TGACCATTGCTGAGCCGGCCATGATCGCCGAGTGCAAGACGCGCACCGAGGTGTTCGAGATCTCCCGGCGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS CCA 72 bp CGAACACCTCGGTGCGCGTCTTGCACTCGGCGATCATaGCCGGCTCAGCAATGGTCAGGGAACCCAGGCTCC +
Preference number: 6 (lower is better)
Translates to: RTPRCASCTRRS*PAQQWSGNPGS
Trigger: GGAGCCTGGGTTCCCTGACCATTGCTGAGCCGGCCATGATCGCCGAGTGCAAGACGCGCACCGAGGTGTTCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS CAA 72 bp AGGCGCCGGGAGATCTCGAACACCTCGGTGCGCGTCTaGCACTCGGCGATCATGGCCGGCTCAGCAATGGTC +
Preference number: 6 (lower is better)
Translates to: RRREISNTSVRV*HSAIMAGSAMV
Trigger: GACCATTGCTGAGCCGGCCATGATCGCCGAGTGCAAGACGCGCACCGAGGTGTTCGAGATCTCCCGGCGCCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS CAA 72 bp CGGGTCACAGGCCGTGCAGCTGCCACTGTCTCACACTaGCATGCCAGGTGGTCTTCCAGCGTCACCGTGGCC +
Preference number: 6 (lower is better)
Translates to: RVTGRAAATVSH*HARWSSSVTVA
Trigger: GGCCACGGTGACGCTGGAAGACCACCTGGCATGCAAGTGTGAGACAGTGGCAGCTGCACGGCCTGTGACCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS CAA 90 bp CGGTCTATGAGGCGCCGGGAGATCTCGAACACCTCGGTGCGCGTCTaGCACTCGGCGATCATGGCCGGCTCAGCAATGGTCAGGGAACCC +
Preference number: 6 (lower is better)
Translates to: RSMRRREISNTSVRV*HSAIMAGSAMVREP
Trigger: GGGTTCCCTGACCATTGCTGAGCCGGCCATGATCGCCGAGTGCAAGACGCGCACCGAGGTGTTCGAGATCTCCCGGCGCCTCATAGACCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS CCA 72 bp CTTCCACGAGCCAAGCTCTCCAGCTCGCCTCCAGAGTaGGAGCGGGTCATGTTCAGGTCCAACTCGGCCCCA +
Preference number: 6 (lower is better)
Translates to: LPRAKLSSSPPE*ERVMFRSNSAP
Trigger: TGGGGCCGAGTTGGACCTGAACATGACCCGCTCCCACTCTGGAGGCGAGCTGGAGAGCTTGGCTCGTGGAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS CCA 72 bp TCTTTCTCACCTGGACAGGTCGCAGCTGCACCTGGGTaGGGCGGCACTGCACGTTGCGGTTGTTGCAGCAGC +
Preference number: 6 (lower is better)
Translates to: SFSPGQVAAAPG*GGTARCGCCSS
Trigger: GCTGCTGCAACAACCGCAACGTGCAGTGCCGCCCCACCCAGGTGCAGCTGCGACCTGTCCAGGTGAGAAAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS CAA 90 bp CCCGGGCTTCGGGTCACAGGCCGTGCAGCTGCCACTGTCTCACACTaGCATGCCAGGTGGTCTTCCAGCGTCACCGTGGCCTTCTTAAAG +
Preference number: 6 (lower is better)
Translates to: PGLRVTGRAAATVSH*HARWSSSVTVAFLK
Trigger: CTTTAAGAAGGCCACGGTGACGCTGGAAGACCACCTGGCATGCAAGTGTGAGACAGTGGCAGCTGCACGGCCTGTGACCCGAAGCCCGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS CCA 72 bp TCGATCTTTCTCACCTGGACAGGTCGCAGCTGCACCTaGGTGGGGCGGCACTGCACGTTGCGGTTGTTGCAG +
Preference number: 6 (lower is better)
Translates to: SIFLTWTGRSCT*VGRHCTLRLLQ
Trigger: CTGCAACAACCGCAACGTGCAGTGCCGCCCCACCCAGGTGCAGCTGCGACCTGTCCAGGTGAGAAAGATCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS GCA 72 bp TCCAACTCGGCCCCATCTTCCTCTCCGGGGTCTCCGTaGAGCAGGCGTTGGAGATCATCAAAGGAGCGGATC +
Preference number: 6 (lower is better)
Translates to: SNSAPSSSPGSP*SRRWRSSKERI
Trigger: GATCCGCTCCTTTGATGATCTCCAACGCCTGCTGCACGGAGACCCCGGAGAGGAAGATGGGGCCGAGTTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS GCA 72 bp CACAGGCCGTGCAGCTGCCACTGTCTCACACTTGCATaGCAGGTGGTCTTCCAGCGTCACCGTGGCCTTCTT +
Preference number: 6 (lower is better)
Translates to: HRPCSCHCLTLA*QVVFQRHRGLL
Trigger: AAGAAGGCCACGGTGACGCTGGAAGACCACCTGGCATGCAAGTGTGAGACAGTGGCAGCTGCACGGCCTGTG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS GCA 72 bp CCCTCCAGGGCTCTGGGATTCCAGCAGTTGGTCTCCTaGCCCCTAGGGCCATTAGCAAAGCCAGAGGAAGCT +
Preference number: 6 (lower is better)
Translates to: PSRALGFQQLVS*PLGPLAKPEEA
Trigger: AGCTTCCTCTGGCTTTGCTAATGGCCCTAGGGGGCAGGAGACCAACTGCTGGAATCCCAGAGCCCTGGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000440375.1
CDS CCA 72 bp CCCCTAGGGCCATTAGCAAAGCCAGAGGAAGCTGGATaGCAAAGGGCAGTGGGGCCCTTCACTCTTTCCCGG +
Preference number: 6 (lower is better)
Translates to: PLGPLAKPEEAG*QRAVGPFTLSR
Trigger: CCGGGAAAGAGTGAAGGGCCCCACTGCCCTTTGCCATCCAGCTTCCTCTGGCTTTGCTAATGGCCCTAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000440375.1
CDS CAA 90 bp CAACTCGGCCCCATCTTCCTCTCCGGGGTCTCCGTGCAGCAGGCGTaGGAGATCATCAAAGGAGCGGATCGAGTGGTCACTCAGCATCTC +
Preference number: 6 (lower is better)
Translates to: QLGPIFLSGVSVQQA*EIIKGADRVVTQHL
Trigger: GAGATGCTGAGTGACCACTCGATCCGCTCCTTTGATGATCTCCAACGCCTGCTGCACGGAGACCCCGGAGAGGAAGATGGGGCCGAGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS CCA 72 bp CCATCTTCCTCTCCGGGGTCTCCGTGCAGCAGGCGTTaGAGATCATCAAAGGAGCGGATCGAGTGGTCACTC +
Preference number: 6 (lower is better)
Translates to: PSSSPGSPCSRR*RSSKERIEWSL
Trigger: GAGTGACCACTCGATCCGCTCCTTTGATGATCTCCAACGCCTGCTGCACGGAGACCCCGGAGAGGAAGATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS CAA 72 bp CCCATCTTCCTCTCCGGGGTCTCCGTGCAGCAGGCGTaGGAGATCATCAAAGGAGCGGATCGAGTGGTCACT +
Preference number: 6 (lower is better)
Translates to: PIFLSGVSVQQA*EIIKGADRVVT
Trigger: AGTGACCACTCGATCCGCTCCTTTGATGATCTCCAACGCCTGCTGCACGGAGACCCCGGAGAGGAAGATGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000440375.1
ENST00000455790.5
CDS TCA 72 bp TATGTGTGTGCGCGCAAAGTATCTCTATCTAGGGAATaGAAAATGGGCGCTGGCGGCCGGAGGGGAGCCCTA +
Preference number: 6 (lower is better)
Translates to: YVCARKVSLSRE*KMGAGGRRGAL
Trigger: TAGGGCTCCCCTCCGGCCGCCAGCGCCCATTTTTCATTCCCTAGATAGAGATACTTTGCGCGCACACACATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS CCA 72 bp TCCAACCTCCAAGAGGAAAAGGAACACGGCAGTCGATaGTTCGTCTTCACTCGCCGGCTACAGGCGTTTTCC +
Preference number: 6 (lower is better)
Translates to: SNLQEEKEHGSR*FVFTRRLQAFS
Trigger: GGAAAACGCCTGTAGCCGGCGAGTGAAGACGAACCATCGACTGCCGTGTTCCTTTTCCTCTTGGAGGTTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000331163.11
CDS CCA 72 bp CGTGCAGCTGCCACTGTCTCACACTTGCATGCCAGGTaGTCTTCCAGCGTCACCGTGGCCTTCTTAAAGATT +
Preference number: 6 (lower is better)
Translates to: RAAATVSHLHAR*SSSVTVAFLKI
Trigger: AATCTTTAAGAAGGCCACGGTGACGCTGGAAGACCACCTGGCATGCAAGTGTGAGACAGTGGCAGCTGCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000331163.11
ENST00000381551.8
CDS CCA 72 bp GTGGTCTTCCAGCGTCACCGTGGCCTTCTTAAAGATTaGCTTCTTCCGCACAATCTCGATCTTTCTCACCTG +
Preference number: 6 (lower is better)
Translates to: VVFQRHRGLLKD*LLPHNLDLSHL
Trigger: CAGGTGAGAAAGATCGAGATTGTGCGGAAGAAGCCAATCTTTAAGAAGGCCACGGTGACGCTGGAAGACCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000331163.11
ENST00000381551.8
ENST00000455790.5