RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PDF (Homo sapiens)

Ensembl gene IDs: ENSG00000258429

Ensembl transcript IDs: ENST00000288022.2

Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCCTGATCCACGGCCTCTACCCCAAGAATGAGCCAAGAACCAGCTaGTCTAGGGATCTCAGCAGCAAAATCCTGCCCAAGGCTGTTAAA +
Preference number: 1 (lower is better)
Translates to: ALIHGLYPKNEPRTS*SRDLSSKILPKAVK
Trigger: TTTAACAGCCTTGGGCAGGATTTTGCTGCTGAGATCCCTAGAGCAGCTGGTTCTTGGCTCATTCTTGGGGTAGAGGCCGTGGATCAGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR GCA 90 bp TCCAGCTCAGTCTGCCATGCCTTGGCAATCCAGTTTCCTGTCATATaGGAGCCATCCAAGTTGATGCCAAGTAAGATTTGCCCAGCTCAA +
Preference number: 1 (lower is better)
Translates to: SSSVCHALAIQFPVI*EPSKLMPSKICPAQ
Trigger: TTGAGCTGGGCAAATCTTACTTGGCATCAACTTGGATGGCTCGCATATGACAGGAAACTGGATTGCCAAGGCATGGCAGACTGAGCTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR GCA 90 bp CTGATTTCAGGGCAAACATTTCTGACATCTTCCTCCAGCTCAGTCTaGCATGCCTTGGCAATCCAGTTTCCTGTCATATGCGAGCCATCC +
Preference number: 1 (lower is better)
Translates to: LISGQTFLTSSSSSV*HALAIQFPVICEPS
Trigger: GGATGGCTCGCATATGACAGGAAACTGGATTGCCAAGGCATGGCAGACTGAGCTGGAGGAAGATGTCAGAAATGTTTGCCCTGAAATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR GCA 90 bp ATGAGCCAAGAACCAGCTGCTCTAGGGATCTCAGCAGCAAAATCCTaGCCAAGGCTGTTAAAATGTGTGGGCACTCATTTACACTCGTGC +
Preference number: 1 (lower is better)
Translates to: MSQEPAALGISAAKS*PRLLKCVGTHLHSC
Trigger: GCACGAGTGTAAATGAGTGCCCACACATTTTAACAGCCTTGGGCAGGATTTTGCTGCTGAGATCCCTAGAGCAGCTGGTTCTTGGCTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR GCA 90 bp TTCAGGGCAAACATTTCTGACATCTTCCTCCAGCTCAGTCTGCCATaGCTTGGCAATCCAGTTTCCTGTCATATGCGAGCCATCCAAGTT +
Preference number: 1 (lower is better)
Translates to: FRANISDIFLQLSLP*LGNPVSCHMRAIQV
Trigger: AACTTGGATGGCTCGCATATGACAGGAAACTGGATTGCCAAGGCATGGCAGACTGAGCTGGAGGAAGATGTCAGAAATGTTTGCCCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR GCA 90 bp TTTCCTGTCATATGCGAGCCATCCAAGTTGATGCCAAGTAAGATTTaGCCAGCTCAAAGTGAAAGTGTTTGCGTCTTGGTATCCGGAATC +
Preference number: 1 (lower is better)
Translates to: FPVICEPSKLMPSKI*PAQSESVCVLVSGI
Trigger: GATTCCGGATACCAAGACGCAAACACTTTCACTTTGAGCTGGGCAAATCTTACTTGGCATCAACTTGGATGGCTCGCATATGACAGGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR CCA 90 bp CTCATGGGGCCTCAGAGAAAGCCACAAAGGAGGATGGGTCTTTCCTaGGTTCATTTAACTGCCATTTATAACACTTTTTCCTCTAAACAG +
Preference number: 1 (lower is better)
Translates to: LMGPQRKPQRRMGLS*VHLTAIYNTFSSKQ
Trigger: CTGTTTAGAGGAAAAAGTGTTATAAATGGCAGTTAAATGAACCCAGGAAAGACCCATCCTCCTTTGTGGCTTTCTCTGAGGCCCCATGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR GCA 90 bp CATGTTTTTAGCATCTATGAGCTTTCTACAAATCTCCCCATTGGCTaGATCTCTGACCTTGCACCAGTATCTGGTTGGGATTCCCTTTTT +
Preference number: 1 (lower is better)
Translates to: HVFSIYELSTNLPIG*ISDLAPVSGWDSLF
Trigger: AAAAAGGGAATCCCAACCAGATACTGGTGCAAGGTCAGAGATGCAGCCAATGGGGAGATTTGTAGAAAGCTCATAGATGCTAAAAACATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR GCA 90 bp CCACCAAGCCTGGCCGGGATTCCTTTTCAAAGTCTGGCTGCACCTAGAGCCAGTCCCGCCCTCCCAAAGTaGTGGGATTACAGGCGTGAA +
Preference number: 2 (lower is better)
Translates to: PPSLAGIPFQSLAAPRASPALPK*WDYRRE
Trigger: TTCACGCCTGTAATCCCAGCACTTTGGGAGGGCGGG...ACTGGCTCTAGGTGCAGCCAGACTTTGAAAAGGAATCCCGGCCAGGCTTGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR CCA 90 bp AGTCTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCCTCATGGGGCCTCAGGTAACCTCCGCCTCCTaGGTTCAAGTAATTCTCTGC +
Preference number: 2 (lower is better)
Translates to: SLAAPRASLLLLGLMGPQVTSAS*VQVILC
Trigger: GCAGAGAATTACTTGAACCCAGGAGGCGGAGGTTAC...CTGAGGCCCCATGAGGCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR TCA 90 bp CCACCAAGCCTGGCCGGGATTCCTTTTCAAAGTCTGGCTGCACCTAGAGCCAGTCCAGAATCATACTTTTaGGTCTCGCTCTGTCGCCCA +
Preference number: 2 (lower is better)
Translates to: PPSLAGIPFQSLAAPRASPESYF*VSLCRP
Trigger: TGGGCGACAGAGCGAGACTCAAAAGTATGATTCTGG...ACTGGCTCTAGGTGCAGCCAGACTTTGAAAAGGAATCCCGGCCAGGCTTGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR CCA 90 bp CTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCCTCATGGGGCCTCAGAGAACCAAACCTTGGCTTTaGGAGATTATACAGGTCCGA +
Preference number: 2 (lower is better)
Translates to: LAAPRASLLLLGLMGPQRTKPWL*EIIQVR
Trigger: TCGGACCTGTATAATCTCCCAAAGCCAAGGTTTGGT...TCTCTGAGGCCCCATGAGGCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR TCA 90 bp CCACCAAGCCTGGCCGGGATTCCTTTTCAAAGTCTGGCTGCACCTAGAGCCAGTCATTTTGTCCGTAACTaGTTTCAGGGCAAACATTTC +
Preference number: 2 (lower is better)
Translates to: PPSLAGIPFQSLAAPRASHFVRN*FQGKHF
Trigger: GAAATGTTTGCCCTGAAATCAGTTACGGACAAAATG...ACTGGCTCTAGGTGCAGCCAGACTTTGAAAAGGAATCCCGGCCAGGCTTGGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR TCA 90 bp ACCCATGTTTTTAGCATCTATGAGCTTTCTACAAATCTCCCCATTGGCTGCATCGGCAGGAGGATTGCCTaGGACCAGGAATTTGAGGCC +
Preference number: 2 (lower is better)
Translates to: THVFSIYELSTNLPIGCIGRRIA*DQEFEA
Trigger: GGCCTCAAATTCCTGGTCTCAGGCAATCCTCCTGCC...GATGCAGCCAATGGGGAGATTTGTAGAAAGCTCATAGATGCTAAAAACATGGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR GCA 90 bp CCACCAAGCCTGGCCGGGATTCCTTTTCAAAGTCTGGCTGCACCTAGAGCCAGTAAATGGCCAGTCACATaGTTACCTGCATTTTTAAAG +
Preference number: 2 (lower is better)
Translates to: PPSLAGIPFQSLAAPRASKWPVT*LPAFLK
Trigger: CTTTAAAAATGCAGGTAAGCATGTGACTGGCCATTT...ACTGGCTCTAGGTGCAGCCAGACTTTGAAAAGGAATCCCGGCCAGGCTTGGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR GCA 90 bp AGTTTGCATTTTATTGCTACCGATGCCCACCACAAAAGCGTTAACCTCAGAAAGGAGCCAGTTTGCTTCTaGTTGGCCTCATGGGGCCTC +
Preference number: 2 (lower is better)
Translates to: SLHFIATDAHHKSVNLRKEPVCF*LASWGL
Trigger: GAGGCCCCATGAGGCCAAGCAGAAGCAAACTGGCTC...CTTTCTGAGGTTAACGCTTTTGTGGTGGGCATCGGTAGCAATAAAATGCAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR GCA 90 bp AGTTTGCATTTTATTGCTACCGATGCCCACCACAAAAGCGTTAACCTCAGAAAGGCCCACTGCAACCTCTaGCTCCCAGGTTTGAGCGAT +
Preference number: 2 (lower is better)
Translates to: SLHFIATDAHHKSVNLRKAHCNL*LPGLSD
Trigger: ATCGCTCAAACCTGGGAGGCAGAGGTTGCAGTGGGC...CTTTCTGAGGTTAACGCTTTTGTGGTGGGCATCGGTAGCAATAAAATGCAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR CCA 90 bp TCCTGCCCAAGGCTGTTAAAATGTGTGGGCACTCATTTACACTCGTGCTGTCATCAGTCTGCCATGCCTTaGCAATCCAGTTTCCTGTCA +
Preference number: 2 (lower is better)
Translates to: SCPRLLKCVGTHLHSCCHQSAMP*QSSFLS
Trigger: TGACAGGAAACTGGATTGCCAAGGCATGGCAGACTG...ATGACAGCACGAGTGTAAATGAGTGCCCACACATTTTAACAGCCTTGGGCAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR TCA 90 bp TCCTGCCCAAGGCTGTTAAAATGTGTGGGCACTCATTTACACTCGTGCTGTCATTTGCCCAGCTCAAAGTaGAAGTGTTTGCGTCTTGGT +
Preference number: 2 (lower is better)
Translates to: SCPRLLKCVGTHLHSCCHLPSSK*KCLRLG
Trigger: ACCAAGACGCAAACACTTTCACTTTGAGCTGGGCAA...ATGACAGCACGAGTGTAAATGAGTGCCCACACATTTTAACAGCCTTGGGCAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR TCA 90 bp AGTTTGCATTTTATTGCTACCGATGCCCACCACAAAAGCGTTAACCTCAGAAAGCTGAGACCAGGAATTTaGGGCCAGCCTGGGCAACAT +
Preference number: 2 (lower is better)
Translates to: SLHFIATDAHHKSVNLRKLRPGI*GQPGQH
Trigger: ATGTTGCCCAGGCTGGCCTCAAATTCCTGGTCTCAG...CTTTCTGAGGTTAACGCTTTTGTGGTGGGCATCGGTAGCAATAAAATGCAAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR GCA 90 bp AGTTTGCATTTTATTGCTACCGATGCCCACCACAAAAGCGTTAACCTCAGAAAGGAGCCAAGAACCAGCTaGTCTAGGGATCTCAGCAGC +
Preference number: 2 (lower is better)
Translates to: SLHFIATDAHHKSVNLRKEPRTS*SRDLSS
Trigger: GCTGCTGAGATCCCTAGAGCAGCTGGTTCTTGGCTC...CTTTCTGAGGTTAACGCTTTTGTGGTGGGCATCGGTAGCAATAAAATGCAAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR CCA 90 bp TCCTGCCCAAGGCTGTTAAAATGTGTGGGCACTCATTTACACTCGTGCTGTCATAGAACTCGGCACAAATaGCCAGTCACATGCTTACCT +
Preference number: 2 (lower is better)
Translates to: SCPRLLKCVGTHLHSCCHRTRHK*PVTCLP
Trigger: AGGTAAGCATGTGACTGGCCATTTGTGCCGAGTTCT...ATGACAGCACGAGTGTAAATGAGTGCCCACACATTTTAACAGCCTTGGGCAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR TCA 90 bp GTGTCTACTGCAGACGAATGCAATTACCCCACCTTCCTCCATACAGAATTGTTAGCGAGCCATCCAAGTTaGTGCCAAGTAAGATTTGCC +
Preference number: 2 (lower is better)
Translates to: VSTADECNYPTFLHTELLASHPS*CQVRFA
Trigger: GGCAAATCTTACTTGGCATCAACTTGGATGGCTCGC...TAACAATTCTGTATGGAGGAAGGTGGGGTAATTGCATTCGTCTGCAGTAGACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR GCA 90 bp GGGATTCCTTTTCAAAGTCTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCATGCCAAGTAAGATTTaGCCAGCTCAAAGTGAAAGT +
Preference number: 2 (lower is better)
Translates to: GIPFQSLAAPRASLLLLGMPSKI*PAQSES
Trigger: ACTTTCACTTTGAGCTGGGCAAATCTTACTTGGCAT...GCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAGACTTTGAAAAGGAATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR GCA 90 bp CGTGCTGTCATGAAACACATCCTTGAACAGGGACTATTCTCTTTCATTTCCATATCCTCCAGCTCAGTCTaGCATGCCTTGGCAATCCAG +
Preference number: 2 (lower is better)
Translates to: RAVMKHILEQGLFSFISISSSSV*HALAIQ
Trigger: CTGGATTGCCAAGGCATGGCAGACTGAGCTGGAGGA...TATGGAAATGAAAGAGAATAGTCCCTGTTCAAGGATGTGTTTCATGACAGCACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR GCA 90 bp CGTGCTGTCATGAAACACATCCTTGAACAGGGACTATTCTCTTTCATTTCCATACAGCTCAGTCTGCCATaGCTTGGCAATCCAGTTTCC +
Preference number: 2 (lower is better)
Translates to: RAVMKHILEQGLFSFISIQLSLP*LGNPVS
Trigger: GGAAACTGGATTGCCAAGGCATGGCAGACTGAGCTG...TATGGAAATGAAAGAGAATAGTCCCTGTTCAAGGATGTGTTTCATGACAGCACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR GCA 90 bp GCACTCATTTACACTCGTGCTGTCATGAAACACATCCTTGAACAGGGACTATTCGGAACTCGTGTCTACTaGAGACGAATGCAATTACCC +
Preference number: 2 (lower is better)
Translates to: ALIYTRAVMKHILEQGLFGTRVY*RRMQLP
Trigger: GGGTAATTGCATTCGTCTGCAGTAGACACGAGTTCC...GAATAGTCCCTGTTCAAGGATGTGTTTCATGACAGCACGAGTGTAAATGAGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR GCA 90 bp ACCCATGTTTTTAGCATCTATGAGCTTTCTACAAATCTCCCCATTGGCTGCATCCAGGAAAGGGCTCAGTaGACTTCTCAATTGTCACCC +
Preference number: 2 (lower is better)
Translates to: THVFSIYELSTNLPIGCIQERAQ*TSQLSP
Trigger: GGGTGACAATTGAGAAGTGCACTGAGCCCTTTCCTG...GATGCAGCCAATGGGGAGATTTGTAGAAAGCTCATAGATGCTAAAAACATGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR TCA 90 bp ACCCATGTTTTTAGCATCTATGAGCTTTCTACAAATCTCCCCATTGGCTGCATCACACTCGTGCTGTCATaGAACACATCCTTGAACAGG +
Preference number: 2 (lower is better)
Translates to: THVFSIYELSTNLPIGCITLVLS*NTSLNR
Trigger: CCTGTTCAAGGATGTGTTTCATGACAGCACGAGTGT...GATGCAGCCAATGGGGAGATTTGTAGAAAGCTCATAGATGCTAAAAACATGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR GCA 90 bp CGTGCTGTCATGAAACACATCCTTGAACAGGGACTATTCTCTTTCATTTCCATACAGTTTCCTGTCATATaGGAGCCATCCAAGTTGATG +
Preference number: 2 (lower is better)
Translates to: RAVMKHILEQGLFSFISIQFPVI*EPSKLM
Trigger: CATCAACTTGGATGGCTCGCATATGACAGGAAACTG...TATGGAAATGAAAGAGAATAGTCCCTGTTCAAGGATGTGTTTCATGACAGCACG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR GCA 90 bp AGTTTGCATTTTATTGCTACCGATGCCCACCACAAAAGCGTTAACCTCAGAAAGACTCATTTACACTCGTaGTGTCATGAAACACATCCT +
Preference number: 2 (lower is better)
Translates to: SLHFIATDAHHKSVNLRKTHLHS*CHETHP
Trigger: AGGATGTGTTTCATGACAGCACGAGTGTAAATGAGT...CTTTCTGAGGTTAACGCTTTTGTGGTGGGCATCGGTAGCAATAAAATGCAAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR CAA 90 bp GTCTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCCTCATGGGGCCTCAGATGCGAGCCATCCAAGTaGATGCCAAGTAAGATTTGC +
Preference number: 3 (lower is better)
Translates to: VWLHLEPVCFCLASWGLRCEPSK*MPSKIC
Trigger: GCAAATCTTACTTGGCATCAACTTGGATGGCTCGCA...TCTGAGGCCCCATGAGGCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR CAA 90 bp CTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCCTCATGGGGCCTCAGAGATACCAAACCTTGGCTTaGGGAGATTATACAGGTCCG +
Preference number: 3 (lower is better)
Translates to: LAAPRASLLLLGLMGPQRYQTLA*GDYTGP
Trigger: CGGACCTGTATAATCTCCCAAAGCCAAGGTTTGGTA...TCTCTGAGGCCCCATGAGGCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR CAA 90 bp CTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCCTCATGGGGCCTCAGAGAGTTGTAGCCAACATTTaGTCCGTAACTGATTTCAGG +
Preference number: 3 (lower is better)
Translates to: LAAPRASLLLLGLMGPQRVVANI*SVTDFR
Trigger: CCTGAAATCAGTTACGGACAAAATGTTGGCTACAAC...TCTCTGAGGCCCCATGAGGCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR CAA 90 bp GGGATTCCTTTTCAAAGTCTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCGCTTTCTATGCCCAATaGTTAACAGGAAAGGGCTCA +
Preference number: 3 (lower is better)
Translates to: GIPFQSLAAPRASLLLLGAFYAQ*LTGKGS
Trigger: TGAGCCCTTTCCTGTTAACAATTGGGCATAGAAAGC...GCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAGACTTTGAAAAGGAATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR-3UTR CAA 90 bp GTGTCTACTGCAGACGAATGCAATTACCCCACCTTCCTCCATACAGAATTGTTAGAAAGTGTTTGCGTCTaGGTATCCGGAATCCTCAGC +
Preference number: 3 (lower is better)
Translates to: VSTADECNYPTFLHTELLESVCV*VSGILS
Trigger: GCTGAGGATTCCGGATACCAAGACGCAAACACTTTC...TAACAATTCTGTATGGAGGAAGGTGGGGTAATTGCATTCGTCTGCAGTAGACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR TCA 72 bp CAATCCAGTTTCCTGTCATATGCGAGCCATCCAAGTTaGTGCCAAGTAAGATTTGCCCAGCTCAAAGTGAAA +
Preference number: 3 (lower is better)
Translates to: QSSFLSYASHPS*CQVRFAQLKVK
Trigger: TTTCACTTTGAGCTGGGCAAATCTTACTTGGCATCAACTTGGATGGCTCGCATATGACAGGAAACTGGATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR TCA 72 bp AAAATGTGTGGGCACTCATTTACACTCGTGCTGTCATaGAACACATCCTTGAACAGGGACTATTCTCTTTCA +
Preference number: 3 (lower is better)
Translates to: KMCGHSFTLVLS*NTSLNRDYSLS
Trigger: TGAAAGAGAATAGTCCCTGTTCAAGGATGTGTTTCATGACAGCACGAGTGTAAATGAGTGCCCACACATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp CCACCAAGCCTGGCCGGGATTCCTTTTCAAAGTCTGGCTGCACCTAGAGCCAGTCGTCCGGGGCGGCCGTaGAGCTGCAAGCCCGGACAC +
Preference number: 4 (lower is better)
Translates to: PPSLAGIPFQSLAAPRASRPGRP*SCKPGH
Trigger: GTGTCCGGGCTTGCAGCTCCACGGCCGCCCCGGACG...ACTGGCTCTAGGTGCAGCCAGACTTTGAAAAGGAATCCCGGCCAGGCTTGGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp AGTCTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCCTCATGGGGCCTCAGACCGGGTCCCCGACTTaGCACACGTGCGAGAACGGC +
Preference number: 4 (lower is better)
Translates to: SLAAPRASLLLLGLMGPQTGSPT*HTCENG
Trigger: GCCGTTCTCGCACGTGTGCCAAGTCGGGGACCCGGT...CTGAGGCCCCATGAGGCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR GCA 90 bp AGTCTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCCTCATGGGGCCTCAGCCGACTTGGCACACGTaGGAGAACGGCGGTTCGGGA +
Preference number: 4 (lower is better)
Translates to: SLAAPRASLLLLGLMGPQPTWHT*ENGGSG
Trigger: TCCCGAACCGCCGTTCTCGCACGTGTGCCAAGTCGG...CTGAGGCCCCATGAGGCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR GCA 90 bp CTAAGGCCACAAGCCCTCCGTAAAAATAAGAACTCGGCACAAATGGCCAGTCACGGGCGGCCGTGGAGCTaGAAGCCCGGACACCGACGG +
Preference number: 4 (lower is better)
Translates to: LRPQALRKNKNSAQMASHGRPWS*KPGHRR
Trigger: CCGTCGGTGTCCGGGCTTGCAGCTCCACGGCCGCCC...GTGACTGGCCATTTGTGCCGAGTTCTTATTTTTACGGAGGGCTTGTGGCCTTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR GCA 90 bp ACGGCCTCTACCCCAAGAATGAGCCAAGAACCAGCTGCTCTAGGGATCTCAGCATCCAGCCCTGAGATCTaGACCGCCTGGAAGCGGGGC +
Preference number: 4 (lower is better)
Translates to: TASTPRMSQEPAALGISASSPEI*TAWKRG
Trigger: GCCCCGCTTCCAGGCGGTGCAGATCTCAGGGCTGGA...TGCTGAGATCCCTAGAGCAGCTGGTTCTTGGCTCATTCTTGGGGTAGAGGCCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp GGGATTCCTTTTCAAAGTCTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCCACGGCCGCCCACAGTaGCCAAAGACTCAGCGCGCC +
Preference number: 4 (lower is better)
Translates to: GIPFQSLAAPRASLLLLGHGRPQ*PKTQRA
Trigger: GGCGCGCTGAGTCTTTGGCCACTGTGGGCGGCCGTG...GCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAGACTTTGAAAAGGAATCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR GCA 90 bp GGGATTCCTTTTCAAAGTCTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCACCTGGACCAGCCGTTaGGTCAGCCGCTGCAGCTCG +
Preference number: 4 (lower is better)
Translates to: GIPFQSLAAPRASLLLLGTWTSR*VSRCSS
Trigger: CGAGCTGCAGCGGCTGACGCAACGGCTGGTCCAGGT...GCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAGACTTTGAAAAGGAATCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp AGTCTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCCTCATGGGGCCTCAGGGCTTCACGAGTAGCTaGGATTACAGGTGCTCGCCA +
Preference number: 4 (lower is better)
Translates to: SLAAPRASLLLLGLMGPQGFTSS*DYRCSP
Trigger: TGGCGAGCACCTGTAATCCCAGCTACTCGTGAAGCC...CTGAGGCCCCATGAGGCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp AGTCTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCCTCATGGGGCCTCAGCAGTTTGCTTCTGCTTaGCCTCATGGGGCCTCAGAG +
Preference number: 4 (lower is better)
Translates to: SLAAPRASLLLLGLMGPQQFASA*PHGASE
Trigger: CTCTGAGGCCCCATGAGGCCAAGCAGAAGCAAACTG...CTGAGGCCCCATGAGGCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR GCA 90 bp GTGTCTACTGCAGACGAATGCAATTACCCCACCTTCCTCCATACAGAATTGTTATCCAGCGCCAGCACCTaGCGCGGCACCCCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: VSTADECNYPTFLHTELLSSAST*RGTPSC
Trigger: GCAGCTGGGGGTGCCGCGGCAGGTGCTGGCGCTGGA...TAACAATTCTGTATGGAGGAAGGTGGGGTAATTGCATTCGTCTGCAGTAGACAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR TCA 90 bp GGGATTCCTTTTCAAAGTCTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCATTGGGGTCCAGCCCTaGGATCTGCACCGCCTGGAA +
Preference number: 4 (lower is better)
Translates to: GIPFQSLAAPRASLLLLGIGVQP*DLHRLE
Trigger: TTCCAGGCGGTGCAGATCTCAGGGCTGGACCCCAAT...GCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAGACTTTGAAAAGGAATCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp GCACTCATTTACACTCGTGCTGTCATGAAACACATCCTTGAACAGGGACTATTCCGCCGCCGCATCACCTaGACCAGCCGTTGCGTCAGC +
Preference number: 4 (lower is better)
Translates to: ALIYTRAVMKHILEQGLFRRRIT*TSRCVS
Trigger: GCTGACGCAACGGCTGGTCCAGGTGATGCGGCGGCG...GAATAGTCCCTGTTCAAGGATGTGTTTCATGACAGCACGAGTGTAAATGAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp ACCCATGTTTTTAGCATCTATGAGCTTTCTACAAATCTCCCCATTGGCTGCATCGGGAAGGGCTCCATTTaGCGGAGCGCGCGCTGGCGG +
Preference number: 4 (lower is better)
Translates to: THVFSIYELSTNLPIGCIGKGSI*RSARWR
Trigger: CCGCCAGCGCGCGCTCCGCCAAATGGAGCCCTTCCC...GATGCAGCCAATGGGGAGATTTGTAGAAAGCTCATAGATGCTAAAAACATGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR GCA 90 bp CGTGCTGTCATGAAACACATCCTTGAACAGGGACTATTCTCTTTCATTTCCATACGTTGCGTCAGCCGCTaGAGCTCGGGCCCGCCTAGC +
Preference number: 4 (lower is better)
Translates to: RAVMKHILEQGLFSFISIRCVSR*SSGPPS
Trigger: GCTAGGCGGGCCCGAGCTGCAGCGGCTGACGCAACG...TATGGAAATGAAAGAGAATAGTCCCTGTTCAAGGATGTGTTTCATGACAGCACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp GTCTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCCTCATGGGGCCTCAGAACCAAACCTTGGCTTTaGGAGATTATACAGGTCCGA +
Preference number: 4 (lower is better)
Translates to: VWLHLEPVCFCLASWGLRTKPWL*EIIQVR
Trigger: TCGGACCTGTATAATCTCCCAAAGCCAAGGTTTGGT...TCTGAGGCCCCATGAGGCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp ACGGCCTCTACCCCAAGAATGAGCCAAGAACCAGCTGCTCTAGGGATCTCAGCAATGAGCCACCAAGCCTaGCCGGGATTCCTTTTCAAA +
Preference number: 4 (lower is better)
Translates to: TASTPRMSQEPAALGISAMSHQA*PGFLFK
Trigger: TTTGAAAAGGAATCCCGGCCAGGCTTGGTGGCTCAT...TGCTGAGATCCCTAGAGCAGCTGGTTCTTGGCTCATTCTTGGGGTAGAGGCCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR TCA 90 bp AGTAAGATTTGCCCAGCTCAAAGTGAAAGTGTTTGCGTCTTGGTATCCGGAATCAGCCCTCGGGAAAGGTaGCCAGGCGGCTGTCAAGCA +
Preference number: 4 (lower is better)
Translates to: SKICPAQSESVCVLVSGISPRER*PGGCQA
Trigger: TGCTTGACAGCCGCCTGGTCACCTTTCCCGAGGGCT...GATTCCGGATACCAAGACGCAAACACTTTCACTTTGAGCTGGGCAAATCTTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp GGGATTCCTTTTCAAAGTCTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCTTTGGCTGGGTAGTGTaGCTCACAACTGATCCCAGC +
Preference number: 4 (lower is better)
Translates to: GIPFQSLAAPRASLLLLGFGWVV*LTTDPS
Trigger: GCTGGGATCAGTTGTGAGCCACACTACCCAGCCAAA...GCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAGACTTTGAAAAGGAATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp GGGATTCCTTTTCAAAGTCTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCGTAACCTCCGCCTCCTaGGTTCAAGTAATTCTCTGC +
Preference number: 4 (lower is better)
Translates to: GIPFQSLAAPRASLLLLGVTSAS*VQVILC
Trigger: GCAGAGAATTACTTGAACCCAGGAGGCGGAGGTTAC...GCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAGACTTTGAAAAGGAATCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp AGTTTGCATTTTATTGCTACCGATGCCCACCACAAAAGCGTTAACCTCAGAAAGCAAGCACTCGCAGGCTaGGGTTCACGAACACGCGCA +
Preference number: 4 (lower is better)
Translates to: SLHFIATDAHHKSVNLRKQALAG*GSRTRA
Trigger: TGCGCGTGTTCGTGAACCCCAGCCTGCGAGTGCTTG...CTTTCTGAGGTTAACGCTTTTGTGGTGGGCATCGGTAGCAATAAAATGCAAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp AGTTTGCATTTTATTGCTACCGATGCCCACCACAAAAGCGTTAACCTCAGAAAGAGGCAGCCCTGCAGGTaGTCCATCTCGTGCTGGATG +
Preference number: 4 (lower is better)
Translates to: SLHFIATDAHHKSVNLRKRQPCR*SISCWM
Trigger: CATCCAGCACGAGATGGACCACCTGCAGGGCTGCCT...CTTTCTGAGGTTAACGCTTTTGTGGTGGGCATCGGTAGCAATAAAATGCAAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp GGGATTCCTTTTCAAAGTCTGGCTGCACCTAGAGCCAGTTTGCTTCTGCTTGGCAGAACTCGGCACAAATaGCCAGTCACATGCTTACCT +
Preference number: 4 (lower is better)
Translates to: GIPFQSLAAPRASLLLLGRTRHK*PVTCLP
Trigger: AGGTAAGCATGTGACTGGCCATTTGTGCCGAGTTCT...GCCAAGCAGAAGCAAACTGGCTCTAGGTGCAGCCAGACTTTGAAAAGGAATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp GCACTCATTTACACTCGTGCTGTCATGAAACACATCCTTGAACAGGGACTATTCCAGGCTGGAGTACAGTaGCGAGATCTCAGCCCACTG +
Preference number: 4 (lower is better)
Translates to: ALIYTRAVMKHILEQGLFQAGVQ*RDLSPL
Trigger: CAGTGGGCTGAGATCTCGCCACTGTACTCCAGCCTG...GAATAGTCCCTGTTCAAGGATGTGTTTCATGACAGCACGAGTGTAAATGAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp CGTGCTGTCATGAAACACATCCTTGAACAGGGACTATTCTCTTTCATTTCCATATGGTCCATCTCGTGCTaGATGATGCGGGCTGCCCAC +
Preference number: 4 (lower is better)
Translates to: RAVMKHILEQGLFSFISIWSISC*MMRAAH
Trigger: GTGGGCAGCCCGCATCATCCAGCACGAGATGGACCA...TATGGAAATGAAAGAGAATAGTCCCTGTTCAAGGATGTGTTTCATGACAGCACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR CAA 72 bp AAGATTTGCCCAGCTCAAAGTGAAAGTGTTTGCGTCTaGGTATCCGGAATCCTCAGCCCCAGTAGCAAAGCT +
Preference number: 4 (lower is better)
Translates to: KICPAQSESVCV*VSGILSPSSKA
Trigger: AGCTTTGCTACTGGGGCTGAGGATTCCGGATACCAAGACGCAAACACTTTCACTTTGAGCTGGGCAAATCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp TCCTGCCCAAGGCTGTTAAAATGTGTGGGCACTCATTTACACTCGTGCTGTCATAGCCACAAAGGAGGATaGGTCTTTCCTGGGTTCATT +
Preference number: 4 (lower is better)
Translates to: SCPRLLKCVGTHLHSCCHSHKGG*VFPGFI
Trigger: AATGAACCCAGGAAAGACCCATCCTCCTTTGTGGCT...ATGACAGCACGAGTGTAAATGAGTGCCCACACATTTTAACAGCCTTGGGCAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp ACCCATGTTTTTAGCATCTATGAGCTTTCTACAAATCTCCCCATTGGCTGCATCCAGTCTGCCATGCCTTaGCAATCCAGTTTCCTGTCA +
Preference number: 4 (lower is better)
Translates to: THVFSIYELSTNLPIGCIQSAMP*QSSFLS
Trigger: TGACAGGAAACTGGATTGCCAAGGCATGGCAGACTG...GATGCAGCCAATGGGGAGATTTGTAGAAAGCTCATAGATGCTAAAAACATGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR CAA 72 bp GACGAATGCAATTACCCCACCTTCCTCCATACAGAATaGTTAGGAAATGTCCACTCCTTTGGGGGTGATTTT +
Preference number: 4 (lower is better)
Translates to: DECNYPTFLHTE*LGNVHSFGGDF
Trigger: AAAATCACCCCCAAAGGAGTGGACATTTCCTAACAATTCTGTATGGAGGAAGGTGGGGTAATTGCATTCGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CCA 90 bp CGTGCTGTCATGAAACACATCCTTGAACAGGGACTATTCTCTTTCATTTCCATAAAAGTGTTTGCGTCTTaGTATCCGGAATCCTCAGCC +
Preference number: 4 (lower is better)
Translates to: RAVMKHILEQGLFSFISIKVFAS*YPESSA
Trigger: GGCTGAGGATTCCGGATACCAAGACGCAAACACTTT...TATGGAAATGAAAGAGAATAGTCCCTGTTCAAGGATGTGTTTCATGACAGCACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
3UTR CAA 72 bp GGGGGTGATTTTTCTCCTCAAGTTGTAGCCAACATTTaGTCCGTAACTGATTTCAGGGCAAACATTTCTGAC +
Preference number: 4 (lower is better)
Translates to: GGDFSPQVVANI*SVTDFRANISD
Trigger: GTCAGAAATGTTTGCCCTGAAATCAGTTACGGACAAAATGTTGGCTACAACTTGAGGAGAAAAATCACCCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS GCA 90 bp TGGACCAGCCGTTGCGTCAGCCGCTGCAGCTCGGGCCCGCCTAGCTaGGCCCGCTCCACCGGGGCCGCCACGCCGCGCAGCACCGGGTCC +
Preference number: 5 (lower is better)
Translates to: WTSRCVSRCSSGPPS*ARSTGAATPRSTGS
Trigger: GGACCCGGTGCTGCGCGGCGTGGCGGCCCCGGTGGAGCGGGCGCAGCTAGGCGGGCCCGAGCTGCAGCGGCTGACGCAACGGCTGGTCCA
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS GCA 90 bp CAGCGCCGCCGCCGCATCACCTGGACCAGCCGTTGCGTCAGCCGCTaGAGCTCGGGCCCGCCTAGCTGCGCCCGCTCCACCGGGGCCGCC +
Preference number: 5 (lower is better)
Translates to: QRRRRITWTSRCVSR*SSGPPSCARSTGAA
Trigger: GGCGGCCCCGGTGGAGCGGGCGCAGCTAGGCGGGCCCGAGCTGCAGCGGCTGACGCAACGGCTGGTCCAGGTGATGCGGCGGCGGCGCTG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS GCA 90 bp CTTAGGCCCACGCAGCGCCGCCGCCGCATCACCTGGACCAGCCGTTaGGTCAGCCGCTGCAGCTCGGGCCCGCCTAGCTGCGCCCGCTCC +
Preference number: 5 (lower is better)
Translates to: LRPTQRRRRITWTSR*VSRCSSGPPSCARS
Trigger: GGAGCGGGCGCAGCTAGGCGGGCCCGAGCTGCAGCGGCTGACGCAACGGCTGGTCCAGGTGATGCGGCGGCGGCGCTGCGTGGGCCTAAG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS CCA 90 bp AGCTGCGGCGCGCTTAGGCCCACGCAGCGCCGCCGCCGCATCACCTaGACCAGCCGTTGCGTCAGCCGCTGCAGCTCGGGCCCGCCTAGC +
Preference number: 5 (lower is better)
Translates to: SCGALRPTQRRRRIT*TSRCVSRCSSGPPS
Trigger: GCTAGGCGGGCCCGAGCTGCAGCGGCTGACGCAACGGCTGGTCCAGGTGATGCGGCGGCGGCGCTGCGTGGGCCTAAGCGCGCCGCAGCT
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS GCA 90 bp GGGGCCGCCACGCCGCGCAGCACCGGGTCCCCGACTTGGCACACGTaGGAGAACGGCGGTTCGGGAGGACCCAGCACCAGACGCCTCAGG +
Preference number: 5 (lower is better)
Translates to: GAATPRSTGSPTWHT*ENGGSGGPSTRRLR
Trigger: CCTGAGGCGTCTGGTGCTGGGTCCTCCCGAACCGCCGTTCTCGCACGTGTGCCAAGTCGGGGACCCGGTGCTGCGCGGCGTGGCGGCCCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS CCA 90 bp CGCTCCACCGGGGCCGCCACGCCGCGCAGCACCGGGTCCCCGACTTaGCACACGTGCGAGAACGGCGGTTCGGGAGGACCCAGCACCAGA +
Preference number: 5 (lower is better)
Translates to: RSTGAATPRSTGSPT*HTCENGGSGGPSTR
Trigger: TCTGGTGCTGGGTCCTCCCGAACCGCCGTTCTCGCACGTGTGCCAAGTCGGGGACCCGGTGCTGCGCGGCGTGGCGGCCCCGGTGGAGCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS TCA 90 bp CGCAGGCCAGGAAGCCGGCGACGCTCTCGCAGCCCTCGGGAAAGGTaGCCAGGCGGCTGTCAAGCACTCGCAGGCTGGGGTTCACGAACA +
Preference number: 5 (lower is better)
Translates to: RRPGSRRRSRSPRER*PGGCQALAGWGSRT
Trigger: TGTTCGTGAACCCCAGCCTGCGAGTGCTTGACAGCCGCCTGGTCACCTTTCCCGAGGGCTGCGAGAGCGTCGCCGGCTTCCTGGCCTGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CAA 90 bp ACGGCCTCTACCCCAAGAATGAGCCAAGAACCAGCTGCTCTAGGGATCTCAGCAGGGGAAGGGCTCCATTaGGCGGAGCGCGCGCTGGCG +
Preference number: 5 (lower is better)
Translates to: TASTPRMSQEPAALGISAGEGLH*AERALA
Trigger: CGCCAGCGCGCGCTCCGCCAAATGGAGCCCTTCCCC...TGCTGAGATCCCTAGAGCAGCTGGTTCTTGGCTCATTCTTGGGGTAGAGGCCGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS-3UTR CAA 90 bp GTGTCTACTGCAGACGAATGCAATTACCCCACCTTCCTCCATACAGAATTGTTACACCGGGTCCCCGACTaGGCACACGTGCGAGAACGG +
Preference number: 5 (lower is better)
Translates to: VSTADECNYPTFLHTELLHRVPD*AHVRER
Trigger: CCGTTCTCGCACGTGTGCCAAGTCGGGGACCCGGTG...TAACAATTCTGTATGGAGGAAGGTGGGGTAATTGCATTCGTCTGCAGTAGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS CCA 72 bp CGCAGGGGGAAGGGCTCCATTTGGCGGAGCGCGCGCTaGCGGGGCGGGCACTCCCGACACAGCGCCTCGGGG +
Preference number: 6 (lower is better)
Translates to: RRGKGSIWRSAR*RGGHSRHSASG
Trigger: CCCCGAGGCGCTGTGTCGGGAGTGCCCGCCCCGCCAGCGCGCGCTCCGCCAAATGGAGCCCTTCCCCCTGCG
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS CAA 90 bp CCGCTCCACCGGGGCCGCCACGCCGCGCAGCACCGGGTCCCCGACTaGGCACACGTGCGAGAACGGCGGTTCGGGAGGACCCAGCACCAG +
Preference number: 6 (lower is better)
Translates to: PLHRGRHAAQHRVPD*AHVRERRFGRTQHQ
Trigger: CTGGTGCTGGGTCCTCCCGAACCGCCGTTCTCGCACGTGTGCCAAGTCGGGGACCCGGTGCTGCGCGGCGTGGCGGCCCCGGTGGAGCGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS CCA 72 bp GGGGCCGCCACGCCGCGCAGCACCGGGTCCCCGACTTaGCACACGTGCGAGAACGGCGGTTCGGGAGGACCC +
Preference number: 6 (lower is better)
Translates to: GAATPRSTGSPT*HTCENGGSGGP
Trigger: GGGTCCTCCCGAACCGCCGTTCTCGCACGTGTGCCAAGTCGGGGACCCGGTGCTGCGCGGCGTGGCGGCCCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS CAA 72 bp CGGGGCCGCCACGCCGCGCAGCACCGGGTCCCCGACTaGGCACACGTGCGAGAACGGCGGTTCGGGAGGACC +
Preference number: 6 (lower is better)
Translates to: RGRHAAQHRVPD*AHVRERRFGRT
Trigger: GGTCCTCCCGAACCGCCGTTCTCGCACGTGTGCCAAGTCGGGGACCCGGTGCTGCGCGGCGTGGCGGCCCCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS GCA 72 bp CGCCGCATCACCTGGACCAGCCGTTGCGTCAGCCGCTaGAGCTCGGGCCCGCCTAGCTGCGCCCGCTCCACC +
Preference number: 6 (lower is better)
Translates to: RRITWTSRCVSR*SSGPPSCARST
Trigger: GGTGGAGCGGGCGCAGCTAGGCGGGCCCGAGCTGCAGCGGCTGACGCAACGGCTGGTCCAGGTGATGCGGCG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS GCA 72 bp ACGCAGCGCCGCCGCCGCATCACCTGGACCAGCCGTTaGGTCAGCCGCTGCAGCTCGGGCCCGCCTAGCTGC +
Preference number: 6 (lower is better)
Translates to: TQRRRRITWTSR*VSRCSSGPPSC
Trigger: GCAGCTAGGCGGGCCCGAGCTGCAGCGGCTGACGCAACGGCTGGTCCAGGTGATGCGGCGGCGGCGCTGCGT
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS CCA 72 bp GCGCTTAGGCCCACGCAGCGCCGCCGCCGCATCACCTaGACCAGCCGTTGCGTCAGCCGCTGCAGCTCGGGC +
Preference number: 6 (lower is better)
Translates to: ALRPTQRRRRIT*TSRCVSRCSSG
Trigger: GCCCGAGCTGCAGCGGCTGACGCAACGGCTGGTCCAGGTGATGCGGCGGCGGCGCTGCGTGGGCCTAAGCGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS GCA 72 bp ACGCCGCGCAGCACCGGGTCCCCGACTTGGCACACGTaGGAGAACGGCGGTTCGGGAGGACCCAGCACCAGA +
Preference number: 6 (lower is better)
Translates to: TPRSTGSPTWHT*ENGGSGGPSTR
Trigger: TCTGGTGCTGGGTCCTCCCGAACCGCCGTTCTCGCACGTGTGCCAAGTCGGGGACCCGGTGCTGCGCGGCGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS TCA 72 bp GGAAGCCGGCGACGCTCTCGCAGCCCTCGGGAAAGGTaGCCAGGCGGCTGTCAAGCACTCGCAGGCTGGGGT +
Preference number: 6 (lower is better)
Translates to: GSRRRSRSPRER*PGGCQALAGWG
Trigger: ACCCCAGCCTGCGAGTGCTTGACAGCCGCCTGGTCACCTTTCCCGAGGGCTGCGAGAGCGTCGCCGGCTTCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288022.2
CDS CCA 72 bp TCTCCATTGGGGTCCAGCCCTGAGATCTGCACCGCCTaGAAGCGGGGCACGCAGGCCAGGAAGCCGGCGACG +
Preference number: 6 (lower is better)
Translates to: SPLGSSPEICTA*KRGTQARKPAT
Trigger: CGTCGCCGGCTTCCTGGCCTGCGTGCCCCGCTTCCAGGCGGTGCAGATCTCAGGGCTGGACCCCAATGGAGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288022.2