Pregenerated sensors for PDCL3 (Homo sapiens)
Ensembl gene IDs: ENSG00000115539Ensembl transcript IDs: ENST00000416255.5, ENST00000450127.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CGTAACAGGAGTCCAGGAAATAGACACTCTCTCCAACAGAAATGCGCCTCCCATCCTCCCATCTCTCACTaGCCCGCCTGTCTCCCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: RNRSPGNRHSLQQKCASHPPISH*PACLPE Trigger: CTCTGGGAGACAGGCGGGGCAGTGAGAGATGGGAGG...ATGGGAGGCGCATTTCTGTTGGAGAGAGTGTCTATTTCCTGGACTCCTGTTACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450127.1 |
||
| CDS-3UTR GCA 90 bp | CCTCATACACAGGCAGAAGTGAACTTGACCCACCATCGTAACAGGAGTCCAGGATCTCTCCAACAGAAATaGGCCTCCCATCTCTCACTG | + |
|
Preference number: 4 (lower is better) Translates to: PHTQAEVNLTHHRNRSPGSLQQK*ASHLSL Trigger: CAGTGAGAGATGGGAGGCGCATTTCTGTTGGAGAGA...TCCTGGACTCCTGTTACGATGGTGGGTCAAGTTCACTTCTGCCTGTGTATGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450127.1 |
||
| 3UTR CAA 72 bp | ACGTGCTTCCGTCCTCATACACAGGCAGAAGTGAACTaGACCCACCATCGTAACAGGAGTCCAGGAAATAGA | + |
|
Preference number: 4 (lower is better) Translates to: TCFRPHTQAEVN*THHRNRSPGNR Trigger: TCTATTTCCTGGACTCCTGTTACGATGGTGGGTCAAGTTCACTTCTGCCTGTGTATGAGGACGGAAGCACGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450127.1 |
||
| CDS-3UTR TCA 90 bp | ACCATCGTAACAGGAGTCCAGGAAATAGACACTCTCTCCAACAGAAATGCGCCTATTACGCAACTAAGATaGGAGATTAAACGTGCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: TIVTGVQEIDTLSNRNAPITQLR*EIKRAS Trigger: GGAAGCACGTTTAATCTCTCATCTTAGTTGCGTAAT...AGGCGCATTTCTGTTGGAGAGAGTGTCTATTTCCTGGACTCCTGTTACGATGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450127.1 |
||
| CDS CCA 90 bp | CTGCGTTGGGGTCCTGGCTCTCAGTGGAGCCAGGAACACCGGCTGTaGCGCTGCTTTACGTGCGGAAGACCCCAGGCCGGACCCTCCGCT | + |
|
Preference number: 5 (lower is better) Translates to: LRWGPGSQWSQEHRL*RCFTCGRPQAGPSA Trigger: AGCGGAGGGTCCGGCCTGGGGTCTTCCGCACGTAAAGCAGCGCCACAGCCGGTGTTCCTGGCTCCACTGAGAGCCAGGACCCCAACGCAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000416255.5 |
||
| CDS GCA 90 bp | GAAATAGACACTCTCTCCAACAGAAATGCGCCTCCCATCTCTCACTaGCCCGCCTGTCTCCCAGAGCCCTTACCATCTCTTGTCAGGTTC | + |
|
Preference number: 5 (lower is better) Translates to: EIDTLSNRNAPPISH*PACLPEPLPSLVRF Trigger: GAACCTGACAAGAGATGGTAAGGGCTCTGGGAGACAGGCGGGGCAGTGAGAGATGGGAGGCGCATTTCTGTTGGAGAGAGTGTCTATTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450127.1 |
||
| CDS-3UTR CAA 90 bp | ACCATCGTAACAGGAGTCCAGGAAATAGACACTCTCTCCAACAGAAATGCGCCTCAGGCAGAAGTGAACTaGACCCACCATCGTAACAGG | + |
|
Preference number: 5 (lower is better) Translates to: TIVTGVQEIDTLSNRNAPQAEVN*THHRNR Trigger: CCTGTTACGATGGTGGGTCAAGTTCACTTCTGCCTG...AGGCGCATTTCTGTTGGAGAGAGTGTCTATTTCCTGGACTCCTGTTACGATGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450127.1 |
||
| CDS CCA 72 bp | AGACCGCGAGAAGACATAGTCCCGGAGGACGAGGTTTaGGGGACCCGGCACACCGAGGCGGGGACGCCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: RPREDIVPEDEV*GTRHTEAGTPR Trigger: CCTGGGCGTCCCCGCCTCGGTGTGCCGGGTCCCCCAAACCTCGTCCTCCGGGACTATGTCTTCTCGCGGTCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000416255.5 |
||
| CDS GCA 72 bp | GGCTCTCAGTGGAGCCAGGAACACCGGCTGTGGCGCTaGTTTACGTGCGGAAGACCCCAGGCCGGACCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: GSQWSQEHRLWR*FTCGRPQAGPS Trigger: GGAGGGTCCGGCCTGGGGTCTTCCGCACGTAAAGCAGCGCCACAGCCGGTGTTCCTGGCTCCACTGAGAGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416255.5 |
||
| CDS CCA 72 bp | GGTCCTGGCTCTCAGTGGAGCCAGGAACACCGGCTGTaGCGCTGCTTTACGTGCGGAAGACCCCAGGCCGGA | + |
|
Preference number: 6 (lower is better) Translates to: GPGSQWSQEHRL*RCFTCGRPQAG Trigger: TCCGGCCTGGGGTCTTCCGCACGTAAAGCAGCGCCACAGCCGGTGTTCCTGGCTCCACTGAGAGCCAGGACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416255.5 |
||
| CDS CCA 72 bp | TTAGGCGGGATCCGGCAAGACCTTCACAGGCCCGGGTaGGTAGAGACCGCGAGAAGACATAGTCCCGGAGGA | + |
|
Preference number: 6 (lower is better) Translates to: LGGIRQDLHRPG*VETARRHSPGG Trigger: TCCTCCGGGACTATGTCTTCTCGCGGTCTCTACCCACCCGGGCCTGTGAAGGTCTTGCCGGATCCCGCCTAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416255.5 |
||
| CDS GCA 72 bp | ACTCTCTCCAACAGAAATGCGCCTCCCATCTCTCACTaGCCCGCCTGTCTCCCAGAGCCCTTACCATCTCTT | + |
|
Preference number: 6 (lower is better) Translates to: TLSNRNAPPISH*PACLPEPLPSL Trigger: AAGAGATGGTAAGGGCTCTGGGAGACAGGCGGGGCAGTGAGAGATGGGAGGCGCATTTCTGTTGGAGAGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450127.1 |
||