Pregenerated sensors for PDCL2 (Homo sapiens)

Ensembl gene IDs: ENSG00000163440

Ensembl transcript IDs: ENST00000295645.9

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CCCTCAAGAGCCCGCGTCGTCCTGCAGCTGGCGAGGCGCCACGGATaGAGACCCGCAGCCTTCTCCAGGCTGGAAGAGCGCCCGCTTCAG	+
Preference number: 5 (lower is better) Translates to: PSRARVVLQLARRHG*RPAAFSRLEERPLQ Trigger: CTGAAGCGGGCGCTCTTCCAGCCTGGAGAAGGCTGCGGGTCTCCATCCGTGGCGCCTCGCCAGCTGCAGGACGACGCGGGCTCTTGAGGG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000295645.9
CDS CCA 90 bp	ATGATGCGCTGCTCTGCCCCTCAAGAGCCCGCGTCGTCCTGCAGCTaGCGAGGCGCCACGGATGGAGACCCGCAGCCTTCTCCAGGCTGG	+
Preference number: 5 (lower is better) Translates to: MMRCSAPQEPASSCS*RGATDGDPQPSPGW Trigger: CCAGCCTGGAGAAGGCTGCGGGTCTCCATCCGTGGCGCCTCGCCAGCTGCAGGACGACGCGGGCTCTTGAGGGGCAGAGCAGCGCATCAT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000295645.9
CDS CCA 72 bp	GCCCGCGTCGTCCTGCAGCTGGCGAGGCGCCACGGATaGAGACCCGCAGCCTTCTCCAGGCTGGAAGAGCGC	+
Preference number: 6 (lower is better) Translates to: ARVVLQLARRHG*RPAAFSRLEER Trigger: GCGCTCTTCCAGCCTGGAGAAGGCTGCGGGTCTCCATCCGTGGCGCCTCGCCAGCTGCAGGACGACGCGGGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000295645.9
CDS GCA 72 bp	ATGCGCTGCTCTGCCCCTCAAGAGCCCGCGTCGTCCTaGAGCTGGCGAGGCGCCACGGATGGAGACCCGCAG	+
Preference number: 6 (lower is better) Translates to: MRCSAPQEPASS*SWRGATDGDPQ Trigger: CTGCGGGTCTCCATCCGTGGCGCCTCGCCAGCTGCAGGACGACGCGGGCTCTTGAGGGGCAGAGCAGCGCAT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000295645.9
CDS CCA 72 bp	GGCGCCACGGATGGAGACCCGCAGCCTTCTCCAGGCTaGAAGAGCGCCCGCTTCAGGCCCGGCGGTTTCGAG	+
Preference number: 6 (lower is better) Translates to: GATDGDPQPSPG*KSARFRPGGFE Trigger: CTCGAAACCGCCGGGCCTGAAGCGGGCGCTCTTCCAGCCTGGAGAAGGCTGCGGGTCTCCATCCGTGGCGCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000295645.9
CDS CCA 72 bp	TGCTCTGCCCCTCAAGAGCCCGCGTCGTCCTGCAGCTaGCGAGGCGCCACGGATGGAGACCCGCAGCCTTCT	+
Preference number: 6 (lower is better) Translates to: CSAPQEPASSCS*RGATDGDPQPS Trigger: AGAAGGCTGCGGGTCTCCATCCGTGGCGCCTCGCCAGCTGCAGGACGACGCGGGCTCTTGAGGGGCAGAGCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000295645.9
CDS CCA 72 bp	GTTTCTGGAAACTTTCTTGCTAGAAGACTAAGATGCTaGTTAACCAACAAACACATTGGGATGCTTGATCTG	+
Preference number: 6 (lower is better) Translates to: VSGNFLARRLRC*LTNKHIGMLDL Trigger: CAGATCAAGCATCCCAATGTGTTTGTTGGTTAACCAGCATCTTAGTCTTCTAGCAAGAAAGTTTCCAGAAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000295645.9

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu