RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PDCD2 (Homo sapiens)

Ensembl gene IDs: ENSG00000071994

Ensembl transcript IDs: ENST00000443345.2, ENST00000453163.6, ENST00000537445.5, ENST00000538195.1, ENST00000541970.6, ENST00000543284.1, ENST00000544336.5, ENST00000544866.5, ENST00000614056.4

Found 204 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCATCGCCTTTTGCCTTTCAGTGTCTCATCTGTAAGCAGGGCCGCTaGCTGACCAAGATCAGTTCTGAAGGTCCAGCCTCTTTAAATTCC +
Preference number: 1 (lower is better)
Translates to: PSPFAFQCLICKQGR*LTKISSEGPASLNS
Trigger: GGAATTTAAAGAGGCTGGACCTTCAGAACTGATCTTGGTCAGCCAGCGGCCCTGCTTACAGATGAGACACTGAAAGGCAAAAGGCGATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR CCA 90 bp ATCAACCACCTCTCCAAAGAGCCTGGAGTTCCTTTTAGAGAGAAATaGTACGTAGACACAATCAACATTATCTTCCTCCTACGCCCAACA +
Preference number: 1 (lower is better)
Translates to: INHLSKEPGVPFREK*YVDTINIIFLLRPT
Trigger: TGTTGGGCGTAGGAGGAAGATAATGTTGATTGTGTCTACGTACCATTTCTCTCTAAAAGGAACTCCAGGCTCTTTGGAGAGGTGGTTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000453163.6
3UTR TCA 90 bp AAACTGTTACGATCATCTCCAGAGGTTAACTGGAATATACACCAATaGCAGCTTGCCTGGGTATGCCAAAATACCTGCAAGAATGTCCAC +
Preference number: 1 (lower is better)
Translates to: KLLRSSPEVNWNIHQ*QLAWVCQNTCKNVH
Trigger: GTGGACATTCTTGCAGGTATTTTGGCATACCCAGGCAAGCTGTCATTGGTGTATATTCCAGTTAACCTCTGGAGATGATCGTAACAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR TCA 90 bp TTAATCTTTGATATGACCATGTTCCCACATTATATGAACGTTTCCTaGCCTAGTTCTGGAATCAACCACCTCTCCAAAGAGCCTGGAGTT +
Preference number: 1 (lower is better)
Translates to: LIFDMTMFPHYMNVS*PSSGINHLSKEPGV
Trigger: AACTCCAGGCTCTTTGGAGAGGTGGTTGATTCCAGAACTAGGTCAGGAAACGTTCATATAATGTGGGAACATGGTCATATCAAAGATTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000453163.6
3UTR TCA 90 bp CTGCTTCAGAATTACTGGGTTTCCTGTTCATCATACTCACCAACCTaGGGTTTGGTATTTCTCAAATATTCTGGGCTTCCAGTACATACT +
Preference number: 1 (lower is better)
Translates to: LLQNYWVSCSSYSPT*GLVFLKYSGLPVHT
Trigger: AGTATGTACTGGAAGCCCAGAATATTTGAGAAATACCAAACCTCAGGTTGGTGAGTATGATGAACAGGAAACCCAGTAATTCTGAAGCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR TCA 90 bp TGTGAGATTTTCTTTCTGGTGATTTGGACCAGTTTGTCTCCCTCTTaGTATATCCATCCCAAATGGAAAGGCCCTGTAAACTGTTACGAT +
Preference number: 1 (lower is better)
Translates to: CEIFFLVIWTSLSPS*YIHPKWKGPVNCYD
Trigger: ATCGTAACAGTTTACAGGGCCTTTCCATTTGGGATGGATATATCAAGAGGGAGACAAACTGGTCCAAATCACCAGAAAGAAAATCTCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR GCA 90 bp GATGTTCAAACTGTCCATCTTTTGCAAGCAGGAGCCTTTTCATGTTaGTTGAGTTCTGACATGGCCCTAGTAATCCTTATCCTTAATCTT +
Preference number: 1 (lower is better)
Translates to: DVQTVHLLQAGAFSC*LSSDMALVILILNL
Trigger: AAGATTAAGGATAAGGATTACTAGGGCCATGTCAGAACTCAAGCAACATGAAAAGGCTCCTGCTTGCAAAAGATGGACAGTTTGAACATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000453163.6
3UTR CCA 90 bp AGAATTACTGGGTTTCCTGTTCATCATACTCACCAACCTGAGGTTTaGTATTTCTCAAATATTCTGGGCTTCCAGTACATACTAGAGCCT +
Preference number: 1 (lower is better)
Translates to: RITGFPVHHTHQPEV*YFSNILGFQYILEP
Trigger: AGGCTCTAGTATGTACTGGAAGCCCAGAATATTTGAGAAATACCAAACCTCAGGTTGGTGAGTATGATGAACAGGAAACCCAGTAATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR TCA 90 bp CACATTTACACTAACAAGGCATATTTGAAGTCCAGCTTTCATCCTTaGTCCTGCTACTCTAGGCTCTCCTTTCTCCTAAAGATAAGCATT +
Preference number: 1 (lower is better)
Translates to: HIYTNKAYLKSSFHP*SCYSRLSFLLKISI
Trigger: AATGCTTATCTTTAGGAGAAAGGAGAGCCTAGAGTAGCAGGATCAAGGATGAAAGCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
3UTR-3UTR CCA 90 bp GTCAGCCCTTTGAAAACTGACTTCAGGGCCTTCCTTTCCTCAGGCTGCTGCCTCTGTAAGCAGGGCCGCTaGCTGACCAAGATCAGTTCT +
Preference number: 2 (lower is better)
Translates to: VSPLKTDFRAFLSSGCCLCKQGR*LTKISS
Trigger: AGAACTGATCTTGGTCAGCCAGCGGCCCTGCTTACA...GAGGCAGCAGCCTGAGGAAAGGAAGGCCCTGAAGTCAGTTTTCAAAGGGCTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR GCA 90 bp CCTGGGTATGCCAAAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCCTTTCCTCAGGCTGCTaGCTCCTAGGCCAGACCCTT +
Preference number: 2 (lower is better)
Translates to: PGYAKIPARMSTSSGDVPLSSGC*LLGQTL
Trigger: AAGGGTCTGGCCTAGGAGGCAGCAGCCTGAGGAAAG...GGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTTTGGCATACCCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR TCA 90 bp GTGCTTCCTACTAAGTGTTGCGACCAGCTCTTGTCACTAGTTGATGACAACTTAAGCAGGGCCGCTGGCTaGCCAAGATCAGTTCTGAAG +
Preference number: 2 (lower is better)
Translates to: VLPTKCCDQLLSLVDDNLSRAAG*PRSVLK
Trigger: CTTCAGAACTGATCTTGGTCAGCCAGCGGCCCTGCT...TAAGTTGTCATCAACTAGTGACAAGAGCTGGTCGCAACACTTAGTAGGAAGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR GCA 90 bp CTCAATTTCCTCACCTTCAAAATGGGGCAGTTTCTCACTCATTGGTCTGCTGTCTTTAAGGGGCCCTTCTaGGTGCCCGACACTGTGCTA +
Preference number: 2 (lower is better)
Translates to: LNFLTFKMGQFLTHWSAVFKGPF*VPDTVL
Trigger: TAGCACAGTGTCGGGCACGCAGAAGGGCCCCTTAAA...GACAGCAGACCAATGAGTGAGAAACTGCCCCATTTTGAAGGTGAGGAAATTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000453163.6
3UTR-3UTR CCA 90 bp CTCATCTGTAAGCAGGGCCGCTGGCTGACCAAGATCAGTTCTGAAGGTCCAGCCCTGCTTCAGAATTACTaGGTTTCCTGTTCATCATAC +
Preference number: 2 (lower is better)
Translates to: LICKQGRWLTKISSEGPALLQNY*VSCSSY
Trigger: GTATGATGAACAGGAAACCCAGTAATTCTGAAGCAG...GGCTGGACCTTCAGAACTGATCTTGGTCAGCCAGCGGCCCTGCTTACAGATGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR CCA 90 bp GTCAGCCCTTTGAAAACTGACTTCAGGGCCTTCCTTTCCTCAGGCTGCTGCCTCATGCTCAGAGTGAGATaGTTTGACTTCATTAGGCAT +
Preference number: 2 (lower is better)
Translates to: VSPLKTDFRAFLSSGCCLMLRVR*FDFIRH
Trigger: ATGCCTAATGAAGTCAAACCATCTCACTCTGAGCAT...GAGGCAGCAGCCTGAGGAAAGGAAGGCCCTGAAGTCAGTTTTCAAAGGGCTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR CAA 90 bp TCTGATGCAGTTAGCGTCCTTGTGGATGTTCAAACTGTCCATCTTTaGCAAGCAGGAGCCTTTTCATGTTGCTTGAGTTCTGACATGGCC +
Preference number: 2 (lower is better)
Translates to: SDAVSVLVDVQTVHL*QAGAFSCCLSSDMA
Trigger: GGCCATGTCAGAACTCAAGCAACATGAAAAGGCTCCTGCTTGCAAAAGATGGACAGTTTGAACATCCACAAGGACGCTAACTGCATCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000453163.6
3UTR-3UTR GCA 90 bp GGTGGAGAGCAGTGTAGATATCCTCATTGTCACAGAAGTCAGTCAATAGACCGTCAGTTCTTCCTCAAGTaGTTCACCCATGCTCCCTAT +
Preference number: 2 (lower is better)
Translates to: GGEQCRYPHCHRSQSIDRQFFLK*FTHAPY
Trigger: ATAGGGAGCATGGGTGAAGCACTTGAGGAAGAACTG...ACGGTCTATTGACTGACTTCTGTGACAATGAGGATATCTACACTGCTCTCCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000544866.5
3UTR-3UTR TCA 90 bp GGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCGCCTTTTGCCTTTCATACTCACCAACCTaGGGTTTGGTATTTCTCAAA +
Preference number: 2 (lower is better)
Translates to: GNLYTMLTRKGKTIAFCLSYSPT*GLVFLK
Trigger: TTTGAGAAATACCAAACCTCAGGTTGGTGAGTATGA...AAGGCAAAAGGCGATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR TCA 90 bp GTGCTTCCTACTAAGTGTTGCGACCAGCTCTTGTCACTAGTTGATGACAACTTAGACCAAGATCAGTTCTaGAGGTCCAGCCTCTTTAAA +
Preference number: 2 (lower is better)
Translates to: VLPTKCCDQLLSLVDDNLDQDQF*RSSLFK
Trigger: TTTAAAGAGGCTGGACCTTCAGAACTGATCTTGGTC...TAAGTTGTCATCAACTAGTGACAAGAGCTGGTCGCAACACTTAGTAGGAAGCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR TCA 90 bp AAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCAAATAACAGTTTTCAAGGGTCAGCCCTTTaGAAACTGACTTCAGGGCCT +
Preference number: 2 (lower is better)
Translates to: KYLQECPHHLVMSPNNSFQGSAL*KLTSGP
Trigger: AGGCCCTGAAGTCAGTTTTCAAAGGGCTGACCCTTG...AAAACTGTTATTTGGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR TCA 90 bp CATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTAACTTCCCCAAAGACTGTGAGCATCTaGCCACTGGAGTGTTGCTTC +
Preference number: 2 (lower is better)
Translates to: HGTCIVLLSVIIWTLTSPKTVSI*PLECCF
Trigger: GAAGCAACACTCCAGTGGTCAGATGCTCACAGTCTT...TGGGGAAGTTAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
3UTR-3UTR TCA 90 bp CAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCTTTCATTCCTCCATAAGACTGTaGGCATCTGACCACTGGAGT +
Preference number: 2 (lower is better)
Translates to: QFHSHIYTNKAYLKSSFHSSIRL*ASDHWS
Trigger: ACTCCAGTGGTCAGATGCTCACAGTCTTATGGAGGA...ATGAAAGCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
3UTR-3UTR TCA 90 bp ACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTATCCTCCATAAGACTGTaGGCATCTGACCACTGGAGT +
Preference number: 2 (lower is better)
Translates to: TCSHGTCIVLLSVIIWTLSSIRL*ASDHWS
Trigger: ACTCCAGTGGTCAGATGCTCACAGTCTTATGGAGGA...TAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATGGGAACACGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
3UTR-3UTR GCA 90 bp GTGCTTCCTACTAAGTGTTGCGACCAGCTCTTGTCACTAGTTGATGACAACTTACATAACCCTTGTATGTaGGATAGGGAACCTGTATAC +
Preference number: 2 (lower is better)
Translates to: VLPTKCCDQLLSLVDDNLHNPCM*DREPVY
Trigger: GTATACAGGTTCCCTATCGCACATACAAGGGTTATG...TAAGTTGTCATCAACTAGTGACAAGAGCTGGTCGCAACACTTAGTAGGAAGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR CCA 90 bp GGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCGCCTTTTGCCTTCTGCACCTCTATTTTTaGTATAAGTATTTCCTTAGG +
Preference number: 2 (lower is better)
Translates to: GNLYTMLTRKGKTIAFCLLHLYF*YKYFLR
Trigger: CCTAAGGAAATACTTATACCAAAAATAGAGGTGCAG...AAGGCAAAAGGCGATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR CCA 90 bp GTATGTGCGATAGGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCCACCAACCTGAGGTTTaGTATTTCTCAAATATTCTG +
Preference number: 2 (lower is better)
Translates to: VCAIGNLYTMLTRKGKTIHQPEV*YFSNIL
Trigger: CAGAATATTTGAGAAATACCAAACCTCAGGTTGGTG...GATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCCTATCGCACATAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR TCA 90 bp TGCATTTCAGTTAACAGGGATGTGTTAGGGGACAATGTGAGCCAATGTAGATTATCATCCTGCCAACTGTaGTACTGCTGCTTCAGAATT +
Preference number: 2 (lower is better)
Translates to: CISVNRDVLGDNVSQCRLSSCQL*YCCFRI
Trigger: AATTCTGAAGCAGCAGTATCACAGTTGGCAGGATGA...TAATCTACATTGGCTCACATTGTCCCCTAACACATCCCTGTTAACTGAAATGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR TCA 90 bp GTGCTTCCTACTAAGTGTTGCGACCAGCTCTTGTCACTAGTTGATGACAACTTATTACCTATGAAAACGTaGGGATTTATGGTGGCAATG +
Preference number: 2 (lower is better)
Translates to: VLPTKCCDQLLSLVDDNLLPMKT*GFMVAM
Trigger: CATTGCCACCATAAATCCTCACGTTTTCATAGGTAA...TAAGTTGTCATCAACTAGTGACAAGAGCTGGTCGCAACACTTAGTAGGAAGCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR CCA 90 bp AAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCAAATAACAGTTTTCTGATAACCTCCCCATaGGAGAAACTCCATACTGCA +
Preference number: 2 (lower is better)
Translates to: KYLQECPHHLVMSPNNSFLITSP*EKLHTA
Trigger: TGCAGTATGGAGTTTCTCCCATGGGGAGGTTATCAG...AAAACTGTTATTTGGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR CCA 90 bp TTGTCACAGAAGTCAGTCAATAGACCGTGTCTGAAAACTGGAATTCCAATATTCATTCCAATATTCTCTTaGCACCACAGGGGCAATCTG +
Preference number: 2 (lower is better)
Translates to: LSQKSVNRPCLKTGIPIFIPIFS*HHRGNL
Trigger: CAGATTGCCCCTGTGGTGCCAAGAGAATATTGGAAT...GAATATTGGAATTCCAGTTTTCAGACACGGTCTATTGACTGACTTCTGTGACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544866.5
3UTR-3UTR CCA 90 bp ATACTCATACAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCTGTCACGTGTTCCCATaGCACCTGTATTGTACTCTT +
Preference number: 2 (lower is better)
Translates to: ILIQFHSHIYTNKAYLKSCHVFP*HLYCTL
Trigger: AAGAGTACAATACAGGTGCCATGGGAACACGTGACA...GGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTGTATGAGTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
3UTR-3UTR CCA 90 bp TGCATTTCAGTTAACAGGGATGTGTTAGGGGACAATGTGAGCCAATGTAGATTATTTAAAAACCTAGGGTaGGAAATGCTCAGAGTGAGA +
Preference number: 2 (lower is better)
Translates to: CISVNRDVLGDNVSQCRLFKNLG*EMLRVR
Trigger: TCTCACTCTGAGCATTTCCCACCCTAGGTTTTTAAA...TAATCTACATTGGCTCACATTGTCCCCTAACACATCCCTGTTAACTGAAATGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR TCA 90 bp ATTTTGAACCCATTAAACATATCTGATGCAGTTAGCGTCCTTGTGGATGTTCAACTAACAAGGCATATTTaGAGTCCAGCTTTCATCCTT +
Preference number: 2 (lower is better)
Translates to: ILNPLNISDAVSVLVDVQLTRHI*SPAFIL
Trigger: AAGGATGAAAGCTGGACTTCAAATATGCCTTGTTAG...TTGAACATCCACAAGGACGCTAACTGCATCAGATATGTTTAATGGGTTCAAAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000453163.6
3UTR-3UTR CCA 90 bp CAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCTTTCATTTTGGAATGTATGACTaGTATGAACTACAAACCAGT +
Preference number: 2 (lower is better)
Translates to: QFHSHIYTNKAYLKSSFHFGMYD*YELQTS
Trigger: ACTGGTTTGTAGTTCATACCAGTCATACATTCCAAA...ATGAAAGCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000453163.6
3UTR-3UTR CCA 90 bp ATTTTGAACCCATTAAACATATCTGATGCAGTTAGCGTCCTTGTGGATGTTCAACCTTTTAGAGAGAAATaGTACGTAGACACAATCAAC +
Preference number: 2 (lower is better)
Translates to: ILNPLNISDAVSVLVDVQPFREK*YVDTIN
Trigger: GTTGATTGTGTCTACGTACCATTTCTCTCTAAAAGG...TTGAACATCCACAAGGACGCTAACTGCATCAGATATGTTTAATGGGTTCAAAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000453163.6
3UTR-3UTR CCA 90 bp AAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCAAATAACAGTTTTTGTAGCCTTCCTCTGTaGATGTACCAAAATTTATTT +
Preference number: 2 (lower is better)
Translates to: KYLQECPHHLVMSPNNSFCSLPL*MYQNLF
Trigger: AAATAAATTTTGGTACATCCACAGAGGAAGGCTACA...AAAACTGTTATTTGGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR CCA 90 bp ATACTCATACAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCTTTGGAATGTATGACTaGTATGAACTACAAACCAGT +
Preference number: 2 (lower is better)
Translates to: ILIQFHSHIYTNKAYLKSFGMYD*YELQTS
Trigger: ACTGGTTTGTAGTTCATACCAGTCATACATTCCAAA...GGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTGTATGAGTAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000453163.6
3UTR GCA 72 bp TTGAAAACTGACTTCAGGGCCTTCCTTTCCTCAGGCTaGTGCCTCCTAGGCCAGACCCTTATTTTGGCTTAC +
Preference number: 3 (lower is better)
Translates to: LKTDFRAFLSSG*CLLGQTLILAY
Trigger: GTAAGCCAAAATAAGGGTCTGGCCTAGGAGGCAGCAGCCTGAGGAAAGGAAGGCCCTGAAGTCAGTTTTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR GCA 72 bp AAAGGCCCCACTAGTCCAGGTTTCCTTATGCCACTGTaGTTCCTACTAAGTGTTGCGACCAGCTCTTGTCAC +
Preference number: 3 (lower is better)
Translates to: KGPTSPGFLMPL*FLLSVATSSCH
Trigger: GTGACAAGAGCTGGTCGCAACACTTAGTAGGAAGCACAGTGGCATAAGGAAACCTGGACTAGTGGGGCCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR CAA 90 bp CCTGGGTATGCCAAAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCATCACAAAGCCACTGTaGTTCCTCATCCTGCCAACT +
Preference number: 3 (lower is better)
Translates to: PGYAKIPARMSTSSGDVPITKPL*FLILPT
Trigger: AGTTGGCAGGATGAGGAACAACAGTGGCTTTGTGAT...GGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTTTGGCATACCCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR TCA 72 bp TGTATCAGAAACATAATAGGCCAAGGGTCAGCCCTTTaGAAACTGACTTCAGGGCCTTCCTTTCCTCAGGCT +
Preference number: 3 (lower is better)
Translates to: CIRNIIGQGSAL*KLTSGPSFPQA
Trigger: AGCCTGAGGAAAGGAAGGCCCTGAAGTCAGTTTTCAAAGGGCTGACCCTTGGCCTATTATGTTTCTGATACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR CCA 72 bp TTGAGAAATGGTGGATGCATGGACTGGCACCGTCTGTaGAGCCATGATTATGTAGGTGAGACTTGCTCATTA +
Preference number: 3 (lower is better)
Translates to: LRNGGCMDWHRL*SHDYVGETCSL
Trigger: TAATGAGCAAGTCTCACCTACATAATCATGGCTCCACAGACGGTGCCAGTCCATGCATCCACCATTTCTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR TCA 72 bp TTCCCCAGATATTATTTGGGCTCCTCCATAAGACTGTaGGCATCTGACCACTGGAGTGTTGCTTCCCATTAT +
Preference number: 3 (lower is better)
Translates to: FPRYYLGSSIRL*ASDHWSVASHY
Trigger: ATAATGGGAAGCAACACTCCAGTGGTCAGATGCTCACAGTCTTATGGAGGAGCCCAAATAATATCTGGGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000544336.5
3UTR TCA 72 bp TCACAAAGCCACTGTTGTTCCTCATCCTGCCAACTGTaGTACTGCTGCTTCAGAATTACTGGGTTTCCTGTT +
Preference number: 3 (lower is better)
Translates to: SQSHCCSSSCQL*YCCFRITGFPV
Trigger: AACAGGAAACCCAGTAATTCTGAAGCAGCAGTATCACAGTTGGCAGGATGAGGAACAACAGTGGCTTTGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR TCA 72 bp CGATCATCTCCAGAGGTTAACTGGAATATACACCAATaGCAGCTTGCCTGGGTATGCCAAAATACCTGCAAG +
Preference number: 3 (lower is better)
Translates to: RSSPEVNWNIHQ*QLAWVCQNTCK
Trigger: CTTGCAGGTATTTTGGCATACCCAGGCAAGCTGTCATTGGTGTATATTCCAGTTAACCTCTGGAGATGATCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR TCA 72 bp AGATGCCAAGTCGGTGCTGTGAGATTTTCTTTCTGGTaGTTTGGACCAGTTTGTCTCCCTCTTGATATATCC +
Preference number: 3 (lower is better)
Translates to: RCQVGAVRFSFW*FGPVCLPLDIS
Trigger: GGATATATCAAGAGGGAGACAAACTGGTCCAAATCACCAGAAAGAAAATCTCACAGCACCGACTTGGCATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR GCA 72 bp ACTGTCCATCTTTTGCAAGCAGGAGCCTTTTCATGTTaGTTGAGTTCTGACATGGCCCTAGTAATCCTTATC +
Preference number: 3 (lower is better)
Translates to: TVHLLQAGAFSC*LSSDMALVILI
Trigger: GATAAGGATTACTAGGGCCATGTCAGAACTCAAGCAACATGAAAAGGCTCCTGCTTGCAAAAGATGGACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000453163.6
3UTR-3UTR CAA 90 bp GTATGTGCGATAGGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCAATGATCAGACAAGTTaGTTGGGAGTTTTACCTAAG +
Preference number: 3 (lower is better)
Translates to: VCAIGNLYTMLTRKGKTINDQTS*LGVLPK
Trigger: CTTAGGTAAAACTCCCAACAAACTTGTCTGATCATT...GATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCCTATCGCACATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR TCA 72 bp ACTAACAAGGCATATTTGAAGTCCAGCTTTCATCCTTaGTCCTGCTACTCTAGGCTCTCCTTTCTCCTAAAG +
Preference number: 3 (lower is better)
Translates to: TNKAYLKSSFHP*SCYSRLSFLLK
Trigger: CTTTAGGAGAAAGGAGAGCCTAGAGTAGCAGGATCAAGGATGAAAGCTGGACTTCAAATATGCCTTGTTAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
3UTR TCA 72 bp TTCTTTCTGGTGATTTGGACCAGTTTGTCTCCCTCTTaGTATATCCATCCCAAATGGAAAGGCCCTGTAAAC +
Preference number: 3 (lower is better)
Translates to: FFLVIWTSLSPS*YIHPKWKGPVN
Trigger: GTTTACAGGGCCTTTCCATTTGGGATGGATATATCAAGAGGGAGACAAACTGGTCCAAATCACCAGAAAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR GCA 72 bp ACTCATTGGTCTGCTGTCACGATTTTAATGAGCTCATaGACAAACAGCCCTTTATATAAGGTAAGTGCTGGA +
Preference number: 3 (lower is better)
Translates to: THWSAVTILMSS*TNSPLYKVSAG
Trigger: TCCAGCACTTACCTTATATAAAGGGCTGTTTGTGCATGAGCTCATTAAAATCGTGACAGCAGACCAATGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000453163.6
3UTR GCA 72 bp AGTTTCAACACTATCAAGTCCAGTGTTTCCTTTCTCTaGCACTTCCACCTCCATTACTCTGAAGTAAATTCC +
Preference number: 3 (lower is better)
Translates to: SFNTIKSSVSFL*HFHLHYSEVNS
Trigger: GGAATTTACTTCAGAGTAATGGAGGTGGAAGTGGCAGAGAAAGGAAACACTGGACTTGATAGTGTTGAAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000453163.6
3UTR CCA 72 bp GGGTTTCCTGTTCATCATACTCACCAACCTGAGGTTTaGTATTTCTCAAATATTCTGGGCTTCCAGTACATA +
Preference number: 3 (lower is better)
Translates to: GFPVHHTHQPEV*YFSNILGFQYI
Trigger: TATGTACTGGAAGCCCAGAATATTTGAGAAATACCAAACCTCAGGTTGGTGAGTATGATGAACAGGAAACCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR-3UTR CAA 90 bp TTGTCACAGAAGTCAGTCAATAGACCGTGTCTGAAAACTGGAATTCCAATATTCAATTCCAATATTCTCTaGGCACCACAGGGGCAATCT +
Preference number: 3 (lower is better)
Translates to: LSQKSVNRPCLKTGIPIFNSNIL*APQGQS
Trigger: AGATTGCCCCTGTGGTGCCAAGAGAATATTGGAATT...GAATATTGGAATTCCAGTTTTCAGACACGGTCTATTGACTGACTTCTGTGACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544866.5
3UTR TCA 72 bp GGGCATATTCTACTAGAGATGTACTGTCCTATGTTTTaGAGTCACCTGGAAGAGTTCTTAGTGTGGTTATAT +
Preference number: 3 (lower is better)
Translates to: GHILLEMYCPMF*SHLEEFLVWLY
Trigger: ATATAACCACACTAAGAACTCTTCCAGGTGACTTCAAAACATAGGACAGTACATCTCTAGTAGAATATGCCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp GTCAGCCCTTTGAAAACTGACTTCAGGGCCTTCCTTTCCTCAGGCTGCTGCCTCAGGAAGATGCAGCGGTaGAAGGCGTCCGGGCGGCCA +
Preference number: 4 (lower is better)
Translates to: VSPLKTDFRAFLSSGCCLRKMQR*KASGRP
Trigger: TGGCCGCCCGGACGCCTTCCACCGCTGCATCTTCCT...GAGGCAGCAGCCTGAGGAAAGGAAGGCCCTGAAGTCAGTTTTCAAAGGGCTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR GCA 90 bp GTCAGCCCTTTGAAAACTGACTTCAGGGCCTTCCTTTCCTCAGGCTGCTGCCTCACCTTGCTGGGGAACTaGTCGCTGCGCAGTCGCCAC +
Preference number: 4 (lower is better)
Translates to: VSPLKTDFRAFLSSGCCLTLLGN*SLRSRH
Trigger: GTGGCGACTGCGCAGCGAGCAGTTCCCCAGCAAGGT...GAGGCAGCAGCCTGAGGAAAGGAAGGCCCTGAAGTCAGTTTTCAAAGGGCTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR GCA 90 bp CTCATCTGTAAGCAGGGCCGCTGGCTGACCAAGATCAGTTCTGAAGGTCCAGCCCTTTCCTCAGGCTGCTaGCTCCTAGGCCAGACCCTT +
Preference number: 4 (lower is better)
Translates to: LICKQGRWLTKISSEGPALSSGC*LLGQTL
Trigger: AAGGGTCTGGCCTAGGAGGCAGCAGCCTGAGGAAAG...GGCTGGACCTTCAGAACTGATCTTGGTCAGCCAGCGGCCCTGCTTACAGATGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp CTCAATTTCCTCACCTTCAAAATGGGGCAGTTTCTCACTCATTGGTCTGCTGTCCCAGCTCCACAGGCCTaGCCCCGGCGGCAGCCATGC +
Preference number: 4 (lower is better)
Translates to: LNFLTFKMGQFLTHWSAVPAPQA*PRRQPC
Trigger: GCATGGCTGCCGCCGGGGCCAGGCCTGTGGAGCTGG...GACAGCAGACCAATGAGTGAGAAACTGCCCCATTTTGAAGGTGAGGAAATTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000453163.6
CDS-3UTR CCA 90 bp AGGCAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATGCCCGCCCACCTTGCTaGGGAACTGCTCGCTGCGCA +
Preference number: 4 (lower is better)
Translates to: RQSSVMSRVPMAPVLYSYARPPC*GTARCA
Trigger: TGCGCAGCGAGCAGTTCCCCAGCAAGGTGGGCGGGC...ATAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000453163.6
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp CTTCCTCCTACGCCCAACATCTCAGTTCTCAGTAACACCAACATAATTACTCGTGCCCGCCCACCTTGCTaGGGAACTGCTCGCTGCGCA +
Preference number: 4 (lower is better)
Translates to: LPPTPNISVLSNTNIITRARPPC*GTARCA
Trigger: TGCGCAGCGAGCAGTTCCCCAGCAAGGTGGGCGGGC...ACGAGTAATTATGTTGGTGTTACTGAGAACTGAGATGTTGGGCGTAGGAGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000453163.6
CDS-3UTR CCA 90 bp GGAGAGCAGTGTAGATATCCTCATTGTCACAGAAGTCAGTCAATAGACCGTGTCAGGAAGATGCAGCGGTaGAAGGCGTCCGGGCGGCCA +
Preference number: 4 (lower is better)
Translates to: GEQCRYPHCHRSQSIDRVRKMQR*KASGRP
Trigger: TGGCCGCCCGGACGCCTTCCACCGCTGCATCTTCCT...GACACGGTCTATTGACTGACTTCTGTGACAATGAGGATATCTACACTGCTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000544866.5
CDS-3UTR GCA 90 bp AGGCAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATACCTTGCTGGGGAACTaGTCGCTGCGCAGTCGCCAC +
Preference number: 4 (lower is better)
Translates to: RQSSVMSRVPMAPVLYSYTLLGN*SLRSRH
Trigger: GTGGCGACTGCGCAGCGAGCAGTTCCCCAGCAAGGT...ATAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR GCA 90 bp CCTGGGTATGCCAAAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCTTCCTTTCCTCAGGCTaGTGCCTCCTAGGCCAGACC +
Preference number: 4 (lower is better)
Translates to: PGYAKIPARMSTSSGDVPFLSSG*CLLGQT
Trigger: GGTCTGGCCTAGGAGGCAGCAGCCTGAGGAAAGGAA...GGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTTTGGCATACCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp CAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCTTTCATCCAGCTCCACAGGCCTaGCCCCGGCGGCAGCCATGC +
Preference number: 4 (lower is better)
Translates to: QFHSHIYTNKAYLKSSFHPAPQA*PRRQPC
Trigger: GCATGGCTGCCGCCGGGGCCAGGCCTGTGGAGCTGG...ATGAAAGCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp ATTTTCATTATGTATCATGTTTATCGTATAGGCATGAACACACGCGCGGCCCCTGGCGCAGCCCACAGCTaGGTCGGAAGGCGGAAATCG +
Preference number: 4 (lower is better)
Translates to: IFIMYHVYRIGMNTRAAPGAAHS*VGRRKS
Trigger: CGATTTCCGCCTTCCGACCCAGCTGTGGGCTGCGCC...AGGGGCCGCGCGTGTGTTCATGCCTATACGATAAACATGATACATAATGAAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000443345.2
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp CAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAGGCGCATACACCTTGCTaGGGAACTGCTCGCTGCGCA +
Preference number: 4 (lower is better)
Translates to: QSSVMSRVPMAPVLYSYQAHTPC*GTARCA
Trigger: TGCGCAGCGAGCAGTTCCCCAGCAAGGTGTATGCGC...CTGATAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000537445.5
CDS-3UTR CCA 90 bp CCTGGGTATGCCAAAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCGGGAGCTGCTGTGGCTaGACAGTATCTGAACCAAGC +
Preference number: 4 (lower is better)
Translates to: PGYAKIPARMSTSSGDVPGSCCG*TVSEPS
Trigger: GCTTGGTTCAGATACTGTCCAGCCACAGCAGCTCCC...GGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTTTGGCATACCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp GTCAGCCCTTTGAAAACTGACTTCAGGGCCTTCCTTTCCTCAGGCTGCTGCCTCGACCAAGATCAGTTCTaGAGGTCCAGCCTCTTTAAA +
Preference number: 4 (lower is better)
Translates to: VSPLKTDFRAFLSSGCCLDQDQF*RSSLFK
Trigger: TTTAAAGAGGCTGGACCTTCAGAACTGATCTTGGTC...GAGGCAGCAGCCTGAGGAAAGGAAGGCCCTGAAGTCAGTTTTCAAAGGGCTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp CACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTGGCGCAGCCCACAGCTaGGTCGGAAGGCGGAAATCG +
Preference number: 4 (lower is better)
Translates to: HVFPWHLYCTLISHYMDFGAAHS*VGRRKS
Trigger: CGATTTCCGCCTTCCGACCCAGCTGTGGGCTGCGCC...AAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATGGGAACACGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000443345.2
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp AGAGCCTGTGATAATCAGCTAATGATCAGACAAGTTTGTTGGGAGTTTTACCTAGCCCGCCCACCTTGCTaGGGAACTGCTCGCTGCGCA +
Preference number: 4 (lower is better)
Translates to: RACDNQLMIRQVCWEFYLARPPC*GTARCA
Trigger: TGCGCAGCGAGCAGTTCCCCAGCAAGGTGGGCGGGC...TAGGTAAAACTCCCAACAAACTTGTCTGATCATTAGCTGATTATCACAGGCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp CTCATACAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCAGGAAGATGCAGCGGTaGAAGGCGTCCGGGCGGCCA +
Preference number: 4 (lower is better)
Translates to: LIQFHSHIYTNKAYLKSSRKMQR*KASGRP
Trigger: TGGCCGCCCGGACGCCTTCCACCGCTGCATCTTCCT...GCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTGTATGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp GCAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATCACCAGGCAGTCTTCAGTaGTGTCACGTGTTCCCATGG +
Preference number: 4 (lower is better)
Translates to: AVFSDVTCSHGTCIVLLSPGSLQ*CHVFPW
Trigger: CCATGGGAACACGTGACATCACTGAAGACTGCCTGG...TGATAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp AGGCAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATCCAGGCAGTCTTCAGTaGTGTCACGTGTTCCCATGG +
Preference number: 4 (lower is better)
Translates to: RQSSVMSRVPMAPVLYSYPGSLQ*CHVFPW
Trigger: CCATGGGAACACGTGACATCACTGAAGACTGCCTGG...ATAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp CCTGGGTATGCCAAAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCCAGCCCTTTGAAAACTaGCTTCAGGGCCTTCCTTTC +
Preference number: 4 (lower is better)
Translates to: PGYAKIPARMSTSSGDVPQPFEN*LQGLPF
Trigger: GAAAGGAAGGCCCTGAAGTCAGTTTTCAAAGGGCTG...GGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTTTGGCATACCCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp CCTTGTATGTGCGATAGGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACGGGAATTGTCAACTGTaGGCTGCTAGGGGATGGAAG +
Preference number: 4 (lower is better)
Translates to: PCMCDREPVYNADTEREDGNCQL*AARGWK
Trigger: CTTCCATCCCCTAGCAGCTCACAGTTGACAATTCCC...GTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCCTATCGCACATACAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp CTCATCTGTAAGCAGGGCCGCTGGCTGACCAAGATCAGTTCTGAAGGTCCAGCCAGATTTTCTTTCTGGTaGTTTGGACCAGTTTGTCTC +
Preference number: 4 (lower is better)
Translates to: LICKQGRWLTKISSEGPARFSFW*FGPVCL
Trigger: GAGACAAACTGGTCCAAATCACCAGAAAGAAAATCT...GGCTGGACCTTCAGAACTGATCTTGGTCAGCCAGCGGCCCTGCTTACAGATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR GCA 90 bp CTCATACAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCGCGGCGCATACACCTTaGTGGGGAACTGCTCGCTGC +
Preference number: 4 (lower is better)
Translates to: LIQFHSHIYTNKAYLKSSAAHTP*WGTARC
Trigger: GCAGCGAGCAGTTCCCCAGCAAGGTGTATGCGCCGC...GCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTGTATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000537445.5
CDS-3UTR CCA 90 bp TTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCTTTCATCCTGGCGCAGCCCACAGCTaGGTCGGAAGGCGGAAATCG +
Preference number: 4 (lower is better)
Translates to: FHSHIYTNKAYLKSSFHPGAAHS*VGRRKS
Trigger: CGATTTCCGCCTTCCGACCCAGCTGTGGGCTGCGCC...AGGATGAAAGCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000443345.2
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp TTATCAGTCATTATATGGACTTTAACTTCCCCAGATATTATTTGGGCTCCTCCAGCCCGCCCACCTTGCTaGGGAACTGCTCGCTGCGCA +
Preference number: 4 (lower is better)
Translates to: LSVIIWTLTSPDIIWAPPARPPC*GTARCA
Trigger: TGCGCAGCGAGCAGTTCCCCAGCAAGGTGGGCGGGC...TGGAGGAGCCCAAATAATATCTGGGGAAGTTAAAGTCCATATAATGACTGATAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000453163.6
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp CATTATATGGACTTTAACTTCCCCAGATATTATTTGGGCTCCTCCATAAGACTGAGGAAGATGCAGCGGTaGAAGGCGTCCGGGCGGCCA +
Preference number: 4 (lower is better)
Translates to: HYMDFNFPRYYLGSSIRLRKMQR*KASGRP
Trigger: TGGCCGCCCGGACGCCTTCCACCGCTGCATCTTCCT...CAGTCTTATGGAGGAGCCCAAATAATATCTGGGGAAGTTAAAGTCCATATAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp ACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTAAGGAAGATGCAGCGGTaGAAGGCGTCCGGGCGGCCA +
Preference number: 4 (lower is better)
Translates to: TCSHGTCIVLLSVIIWTLRKMQR*KASGRP
Trigger: TGGCCGCCCGGACGCCTTCCACCGCTGCATCTTCCT...TAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATGGGAACACGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp GGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTAACTTCCCCAGATAGGAAGATGCAGCGGTaGAAGGCGTCCGGGCGGCCA +
Preference number: 4 (lower is better)
Translates to: GTCIVLLSVIIWTLTSPDRKMQR*KASGRP
Trigger: TGGCCGCCCGGACGCCTTCCACCGCTGCATCTTCCT...ATCTGGGGAAGTTAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp CATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTAACTTCCCCAAGGAAGATGCAGCGGTaGAAGGCGTCCGGGCGGCCA +
Preference number: 4 (lower is better)
Translates to: HGTCIVLLSVIIWTLTSPRKMQR*KASGRP
Trigger: TGGCCGCCCGGACGCCTTCCACCGCTGCATCTTCCT...TGGGGAAGTTAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp TTTCATTATGTATCATGTTTATCGTATAGGCATGAACACACGCGCGGCCCCTTCCCAGGCAGTCTTCAGTaGTGTCACGTGTTCCCATGG +
Preference number: 4 (lower is better)
Translates to: FHYVSCLSYRHEHTRGPFPGSLQ*CHVFPW
Trigger: CCATGGGAACACGTGACATCACTGAAGACTGCCTGG...GAAGGGGCCGCGCGTGTGTTCATGCCTATACGATAAACATGATACATAATGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp GGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCGCCTTTTGCCTTACCTGTATACAATGCTaGCACGGAAAGGGAAGACCA +
Preference number: 4 (lower is better)
Translates to: GNLYTMLTRKGKTIAFCLTCIQC*HGKGRP
Trigger: TGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGT...AAGGCAAAAGGCGATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR GCA 90 bp GGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTAACTTCCCCAGATGCGGCGCATACACCTTaGTGGGGAACTGCTCGCTGC +
Preference number: 4 (lower is better)
Translates to: GTCIVLLSVIIWTLTSPDAAHTP*WGTARC
Trigger: GCAGCGAGCAGTTCCCCAGCAAGGTGTATGCGCCGC...ATCTGGGGAAGTTAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000537445.5
CDS-3UTR GCA 90 bp CTCATCTGTAAGCAGGGCCGCTGGCTGACCAAGATCAGTTCTGAAGGTCCAGCCGATTTATGGTGGCAATaGATTTCAGTTAACAGGGAT +
Preference number: 4 (lower is better)
Translates to: LICKQGRWLTKISSEGPADLWWQ*ISVNRD
Trigger: ATCCCTGTTAACTGAAATGCATTGCCACCATAAATC...GGCTGGACCTTCAGAACTGATCTTGGTCAGCCAGCGGCCCTGCTTACAGATGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp CCTGGGTATGCCAAAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCCTGATAACCTCCCCATaGGAGAAACTCCATACTGCA +
Preference number: 4 (lower is better)
Translates to: PGYAKIPARMSTSSGDVPLITSP*EKLHTA
Trigger: TGCAGTATGGAGTTTCTCCCATGGGGAGGTTATCAG...GGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTTTGGCATACCCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp GCAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAAAGACTGTGAGCATCTaGCCACTGGAGTGTTGCTTC +
Preference number: 4 (lower is better)
Translates to: AVFSDVTCSHGTCIVLLSKTVSI*PLECCF
Trigger: GAAGCAACACTCCAGTGGTCAGATGCTCACAGTCTT...TGATAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp CAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAGTCCTCCATAAGACTGTaGGCATCTGACCACTGGAGT +
Preference number: 4 (lower is better)
Translates to: QSSVMSRVPMAPVLYSYQSSIRL*ASDHWS
Trigger: ACTCCAGTGGTCAGATGCTCACAGTCTTATGGAGGA...CTGATAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp GGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCGCCTTTTGCCTTTCATCCTGCCAACTGTaGTACTGCTGCTTCAGAATT +
Preference number: 4 (lower is better)
Translates to: GNLYTMLTRKGKTIAFCLSSCQL*YCCFRI
Trigger: AATTCTGAAGCAGCAGTATCACAGTTGGCAGGATGA...AAGGCAAAAGGCGATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp TGCATTTCAGTTAACAGGGATGTGTTAGGGGACAATGTGAGCCAATGTAGATTAAGCAGGGCCGCTGGCTaGCCAAGATCAGTTCTGAAG +
Preference number: 4 (lower is better)
Translates to: CISVNRDVLGDNVSQCRLSRAAG*PRSVLK
Trigger: CTTCAGAACTGATCTTGGTCAGCCAGCGGCCCTGCT...TAATCTACATTGGCTCACATTGTCCCCTAACACATCCCTGTTAACTGAAATGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp ACATTCCATAACCCTTGTATGTGCGATAGGGAACCTGTATACAATGCTGACACGCAAGGGTCAGCCCTTTaGAAACTGACTTCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: TFHNPCMCDREPVYNADTQGSAL*KLTSGP
Trigger: AGGCCCTGAAGTCAGTTTTCAAAGGGCTGACCCTTG...CGTGTCAGCATTGTATACAGGTTCCCTATCGCACATACAAGGGTTATGGAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp GTATGTGCGATAGGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCGCCAAGTCGGTGCTGTaGGATTTTCTTTCTGGTGAT +
Preference number: 4 (lower is better)
Translates to: VCAIGNLYTMLTRKGKTIAKSVL*DFLSGD
Trigger: ATCACCAGAAAGAAAATCTCACAGCACCGACTTGGC...GATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCCTATCGCACATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR GCA 90 bp ATACTCATACAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCACCTTGCTGGGGAACTaGTCGCTGCGCAGTCGCCAC +
Preference number: 4 (lower is better)
Translates to: ILIQFHSHIYTNKAYLKSTLLGN*SLRSRH
Trigger: GTGGCGACTGCGCAGCGAGCAGTTCCCCAGCAAGGT...GGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTGTATGAGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR GCA 90 bp ATACAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCTTTACCTTGCTGGGGAACTaGTCGCTGCGCAGTCGCCAC +
Preference number: 4 (lower is better)
Translates to: IQFHSHIYTNKAYLKSSFTLLGN*SLRSRH
Trigger: GTGGCGACTGCGCAGCGAGCAGTTCCCCAGCAAGGT...AAAGCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR GCA 90 bp GTATGTGCGATAGGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCCAGTTCTTCCTCAAGTaGTTCACCCATGCTCCCTAT +
Preference number: 4 (lower is better)
Translates to: VCAIGNLYTMLTRKGKTIQFFLK*FTHAPY
Trigger: ATAGGGAGCATGGGTGAAGCACTTGAGGAAGAACTG...GATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCCTATCGCACATAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR GCA 90 bp CCAGGTTTCCTTATGCCACTGTGCTTCCTACTAAGTGTTGCGACCAGCTCTTGTCTTCCTACTAAGTGTTaGGACCAGCTCTTGTCACTA +
Preference number: 4 (lower is better)
Translates to: PGFLMPLCFLLSVATSSCLPTKC*DQLLSL
Trigger: TAGTGACAAGAGCTGGTCGCAACACTTAGTAGGAAG...ACAAGAGCTGGTCGCAACACTTAGTAGGAAGCACAGTGGCATAAGGAAACCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp GACTGTGTAGCCTTCCTCTGTGGATGTACCAAAATTTATTTAATTCCCTGTCACGGTGGATGCATGGACTaGCACCGTCTGTGGAGCCAT +
Preference number: 4 (lower is better)
Translates to: DCVAFLCGCTKIYLIPCHGGCMD*HRLWSH
Trigger: ATGGCTCCACAGACGGTGCCAGTCCATGCATCCACC...GTGACAGGGAATTAAATAAATTTTGGTACATCCACAGAGGAAGGCTACACAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp CTTCCTCCTACGCCCAACATCTCAGTTCTCAGTAACACCAACATAATTACTCGTTCCTCCATAAGACTGTaGGCATCTGACCACTGGAGT +
Preference number: 4 (lower is better)
Translates to: LPPTPNISVLSNTNIITRSSIRL*ASDHWS
Trigger: ACTCCAGTGGTCAGATGCTCACAGTCTTATGGAGGA...ACGAGTAATTATGTTGGTGTTACTGAGAACTGAGATGTTGGGCGTAGGAGGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000453163.6
CDS-3UTR TCA 90 bp CCATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTAACTTCCCCCCAGGCAGTCTTCAGTaGTGTCACGTGTTCCCATGG +
Preference number: 4 (lower is better)
Translates to: PWHLYCTLISHYMDFNFPPGSLQ*CHVFPW
Trigger: CCATGGGAACACGTGACATCACTGAAGACTGCCTGG...GGGGAAGTTAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATGG
47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp GCGATAGGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCGCCTTTAAACTTTGTAGGTGTTaGGAAATGGTGGATGCATGG +
Preference number: 4 (lower is better)
Translates to: AIGNLYTMLTRKGKTIAFKLCRC*EMVDAW
Trigger: CCATGCATCCACCATTTCTCAACACCTACAAAGTTT...AAAGGCGATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCCTATCGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR GCA 90 bp TGTACTCTTATCAGTCATTATATGGACTTTAACTTCCCCAGATATTATTTGGGCACCTTGCTGGGGAACTaGTCGCTGCGCAGTCGCCAC +
Preference number: 4 (lower is better)
Translates to: CTLISHYMDFNFPRYYLGTLLGN*SLRSRH
Trigger: GTGGCGACTGCGCAGCGAGCAGTTCCCCAGCAAGGT...GCCCAAATAATATCTGGGGAAGTTAAAGTCCATATAATGACTGATAAGAGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR GCA 90 bp CACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTTTTAAGGGGCCCTTCTaGGTGCCCGACACTGTGCTA +
Preference number: 4 (lower is better)
Translates to: HVFPWHLYCTLISHYMDFFKGPF*VPDTVL
Trigger: TAGCACAGTGTCGGGCACGCAGAAGGGCCCCTTAAA...AAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATGGGAACACGTG
47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000453163.6
CDS-3UTR GCA 90 bp GCGATAGGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCGCCTTTCATAACCCTTGTATGTaGGATAGGGAACCTGTATAC +
Preference number: 4 (lower is better)
Translates to: AIGNLYTMLTRKGKTIAFHNPCM*DREPVY
Trigger: GTATACAGGTTCCCTATCGCACATACAAGGGTTATG...AAAGGCGATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCCTATCGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR GCA 90 bp GTATGTGCGATAGGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCTTCCTTATGCCACTGTaGTTCCTACTAAGTGTTGCG +
Preference number: 4 (lower is better)
Translates to: VCAIGNLYTMLTRKGKTIFLMPL*FLLSVA
Trigger: CGCAACACTTAGTAGGAAGCACAGTGGCATAAGGAA...GATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCCTATCGCACATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR GCA 90 bp CCTTGTATGTGCGATAGGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCAGATGCCAAGTCGGTaGTGTGAGATTTTCTTTCTG +
Preference number: 4 (lower is better)
Translates to: PCMCDREPVYNADTEREDQMPSR*CEIFFL
Trigger: CAGAAAGAAAATCTCACAGCACCGACTTGGCATCTG...GTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCCTATCGCACATACAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR GCA 90 bp ACATTCCATAACCCTTGTATGTGCGATAGGGAACCTGTATACAATGCTGACACGTTGAGAAATGGTGGATaGATGGACTGGCACCGTCTG +
Preference number: 4 (lower is better)
Translates to: TFHNPCMCDREPVYNADTLRNGG*MDWHRL
Trigger: CAGACGGTGCCAGTCCATGCATCCACCATTTCTCAA...CGTGTCAGCATTGTATACAGGTTCCCTATCGCACATACAAGGGTTATGGAATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp GTCAGCCCTTTGAAAACTGACTTCAGGGCCTTCCTTTCCTCAGGCTGCTGCCTCCTGCACCTCTATTTTTaGTATAAGTATTTCCTTAGG +
Preference number: 4 (lower is better)
Translates to: VSPLKTDFRAFLSSGCCLLHLYF*YKYFLR
Trigger: CCTAAGGAAATACTTATACCAAAAATAGAGGTGCAG...GAGGCAGCAGCCTGAGGAAAGGAAGGCCCTGAAGTCAGTTTTCAAAGGGCTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp ATACAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCTTTGCGCATACACCTTGCTaGGGAACTGCTCGCTGCGCA +
Preference number: 4 (lower is better)
Translates to: IQFHSHIYTNKAYLKSSFAHTPC*GTARCA
Trigger: TGCGCAGCGAGCAGTTCCCCAGCAAGGTGTATGCGC...AAAGCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000537445.5
CDS-3UTR CCA 90 bp CAGGCAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATGTCACGTGTTCCCATaGCACCTGTATTGTACTCTT +
Preference number: 4 (lower is better)
Translates to: QAVFSDVTCSHGTCIVLLCHVFP*HLYCTL
Trigger: AAGAGTACAATACAGGTGCCATGGGAACACGTGACA...TAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTGCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp GCGATAGGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCGCCTTTGCCAGACCCTTATTTTaGCTTACATTCCATAACCCT +
Preference number: 4 (lower is better)
Translates to: AIGNLYTMLTRKGKTIAFARPLF*LTFHNP
Trigger: AGGGTTATGGAATGTAAGCCAAAATAAGGGTCTGGC...AAAGGCGATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCCTATCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp CCATTATATCCCTGTTATCAAGCACAAGGTCAGGCACAGAGTAAGACTCAAAACAAGACTGTGAGCATCTaGCCACTGGAGTGTTGCTTC +
Preference number: 4 (lower is better)
Translates to: PLYPCYQAQGQAQSKTQNKTVSI*PLECCF
Trigger: GAAGCAACACTCCAGTGGTCAGATGCTCACAGTCTT...GTTTTGAGTCTTACTCTGTGCCTGACCTTGTGCTTGATAACAGGGATATAATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000453163.6
CDS-3UTR TCA 90 bp ACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTACCAGGCAGTCTTCAGTaGTGTCACGTGTTCCCATGG +
Preference number: 4 (lower is better)
Translates to: TCSHGTCIVLLSVIIWTLPGSLQ*CHVFPW
Trigger: CCATGGGAACACGTGACATCACTGAAGACTGCCTGG...TAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATGGGAACACGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp CCAGGTTTCCTTATGCCACTGTGCTTCCTACTAAGTGTTGCGACCAGCTCTTGTTCAGTATTCAAGCACTaGTCAACAGCAATGTGTCTT +
Preference number: 4 (lower is better)
Translates to: PGFLMPLCFLLSVATSSCSVFKH*STAMCL
Trigger: AAGACACATTGCTGTTGATCAGTGCTTGAATACTGA...ACAAGAGCTGGTCGCAACACTTAGTAGGAAGCACAGTGGCATAAGGAAACCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp GTGCTTCCTACTAAGTGTTGCGACCAGCTCTTGTCACTAGTTGATGACAACTTATGGAATATACACCAATaGCAGCTTGCCTGGGTATGC +
Preference number: 4 (lower is better)
Translates to: VLPTKCCDQLLSLVDDNLWNIHQ*QLAWVC
Trigger: GCATACCCAGGCAAGCTGTCATTGGTGTATATTCCA...TAAGTTGTCATCAACTAGTGACAAGAGCTGGTCGCAACACTTAGTAGGAAGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp GTATGTGCGATAGGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCAGTTTGTCTCCCTCTTaGTATATCCATCCCAAATGG +
Preference number: 4 (lower is better)
Translates to: VCAIGNLYTMLTRKGKTISLSPS*YIHPKW
Trigger: CCATTTGGGATGGATATATCAAGAGGGAGACAAACT...GATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCCTATCGCACATAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp AACTGGCCAGATGAAAGAGAAACTTTTAAGGGGCCCTTCTGCGTGCCCGACACTCCTTTTAGAGAGAAATaGTACGTAGACACAATCAAC +
Preference number: 4 (lower is better)
Translates to: NWPDERETFKGPFCVPDTPFREK*YVDTIN
Trigger: GTTGATTGTGTCTACGTACCATTTCTCTCTAAAAGG...AGTGTCGGGCACGCAGAAGGGCCCCTTAAAAGTTTCTCTTTCATCTGGCCAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000453163.6
CDS-3UTR CCA 90 bp GACTGTGTAGCCTTCCTCTGTGGATGTACCAAAATTTATTTAATTCCCTGTCACTGTAAGCAGGGCCGCTaGCTGACCAAGATCAGTTCT +
Preference number: 4 (lower is better)
Translates to: DCVAFLCGCTKIYLIPCHCKQGR*LTKISS
Trigger: AGAACTGATCTTGGTCAGCCAGCGGCCCTGCTTACA...GTGACAGGGAATTAAATAAATTTTGGTACATCCACAGAGGAAGGCTACACAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp GCGATAGGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCGCCTTTTATATCCATCCCAAATaGAAAGGCCCTGTAAACTGT +
Preference number: 4 (lower is better)
Translates to: AIGNLYTMLTRKGKTIAFYIHPK*KGPVNC
Trigger: ACAGTTTACAGGGCCTTTCCATTTGGGATGGATATA...AAAGGCGATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCCTATCGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp GACTGTGTAGCCTTCCTCTGTGGATGTACCAAAATTTATTTAATTCCCTGTCACGAAATGGTGGATGCATaGACTGGCACCGTCTGTGGA +
Preference number: 4 (lower is better)
Translates to: DCVAFLCGCTKIYLIPCHEMVDA*TGTVCG
Trigger: TCCACAGACGGTGCCAGTCCATGCATCCACCATTTC...GTGACAGGGAATTAAATAAATTTTGGTACATCCACAGAGGAAGGCTACACAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp ACATTCCATAACCCTTGTATGTGCGATAGGGAACCTGTATACAATGCTGACACGGTAGGTGTTGAGAAATaGTGGATGCATGGACTGGCA +
Preference number: 4 (lower is better)
Translates to: TFHNPCMCDREPVYNADTVGVEK*WMHGLA
Trigger: TGCCAGTCCATGCATCCACCATTTCTCAACACCTAC...CGTGTCAGCATTGTATACAGGTTCCCTATCGCACATACAAGGGTTATGGAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp ACATTCCATAACCCTTGTATGTGCGATAGGGAACCTGTATACAATGCTGACACGTTAGGAGCTGAGGCATaGCCTGGAATTCCAATATTC +
Preference number: 4 (lower is better)
Translates to: TFHNPCMCDREPVYNADTLGAEA*PGIPIF
Trigger: GAATATTGGAATTCCAGGTCATGCCTCAGCTCCTAA...CGTGTCAGCATTGTATACAGGTTCCCTATCGCACATACAAGGGTTATGGAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp CAGGCAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTACTAACAAGGCATATTTaGAGTCCAGCTTTCATCCTT +
Preference number: 4 (lower is better)
Translates to: QAVFSDVTCSHGTCIVLLLTRHI*SPAFIL
Trigger: AAGGATGAAAGCTGGACTTCAAATATGCCTTGTTAG...TAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTGCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp AGGCAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATTACTGTCCTATGTTTTaGAGTCACCTGGAAGAGTTC +
Preference number: 4 (lower is better)
Translates to: RQSSVMSRVPMAPVLYSYYCPMF*SHLEEF
Trigger: GAACTCTTCCAGGTGACTTCAAAACATAGGACAGTA...ATAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp CAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAGTACTGTCCTATGTTTTaGAGTCACCTGGAAGAGTTC +
Preference number: 4 (lower is better)
Translates to: QSSVMSRVPMAPVLYSYQYCPMF*SHLEEF
Trigger: GAACTCTTCCAGGTGACTTCAAAACATAGGACAGTA...CTGATAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp GTGCTTCCTACTAAGTGTTGCGACCAGCTCTTGTCACTAGTTGATGACAACTTAATTCCAATATTCTCTTaGCACCACAGGGGCAATCTG +
Preference number: 4 (lower is better)
Translates to: VLPTKCCDQLLSLVDDNLIPIFS*HHRGNL
Trigger: CAGATTGCCCCTGTGGTGCCAAGAGAATATTGGAAT...TAAGTTGTCATCAACTAGTGACAAGAGCTGGTCGCAACACTTAGTAGGAAGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp CCTTGTATGTGCGATAGGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCTGCTTCAGAATTACTaGGTTTCCTGTTCATCATAC +
Preference number: 4 (lower is better)
Translates to: PCMCDREPVYNADTEREDLLQNY*VSCSSY
Trigger: GTATGATGAACAGGAAACCCAGTAATTCTGAAGCAG...GTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCCTATCGCACATACAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp AAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCAAATAACAGTTTTGGTGTTGAGAAATGGTaGATGCATGGACTGGCACCG +
Preference number: 4 (lower is better)
Translates to: KYLQECPHHLVMSPNNSFGVEKW*MHGLAP
Trigger: CGGTGCCAGTCCATGCATCCACCATTTCTCAACACC...AAAACTGTTATTTGGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000541970.6
3UTR CAA 72 bp GTTAGCGTCCTTGTGGATGTTCAAACTGTCCATCTTTaGCAAGCAGGAGCCTTTTCATGTTGCTTGAGTTCT +
Preference number: 4 (lower is better)
Translates to: VSVLVDVQTVHL*QAGAFSCCLSS
Trigger: AGAACTCAAGCAACATGAAAAGGCTCCTGCTTGCAAAAGATGGACAGTTTGAACATCCACAAGGACGCTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000453163.6
CDS-3UTR TCA 90 bp CATTATATGGACTTTAACTTCCCCAGATATTATTTGGGCTCCTCCATAAGACTGAAGACTGTGAGCATCTaGCCACTGGAGTGTTGCTTC +
Preference number: 4 (lower is better)
Translates to: HYMDFNFPRYYLGSSIRLKTVSI*PLECCF
Trigger: GAAGCAACACTCCAGTGGTCAGATGCTCACAGTCTT...CAGTCTTATGGAGGAGCCCAAATAATATCTGGGGAAGTTAAAGTCCATATAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp CAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCTTTCATAAGACTGTGAGCATCTaGCCACTGGAGTGTTGCTTC +
Preference number: 4 (lower is better)
Translates to: QFHSHIYTNKAYLKSSFHKTVSI*PLECCF
Trigger: GAAGCAACACTCCAGTGGTCAGATGCTCACAGTCTT...ATGAAAGCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp CATTATATGGACTTTAACTTCCCCAGATATTATTTGGGCTCCTCCATAAGACTGTCCTCCATAAGACTGTaGGCATCTGACCACTGGAGT +
Preference number: 4 (lower is better)
Translates to: HYMDFNFPRYYLGSSIRLSSIRL*ASDHWS
Trigger: ACTCCAGTGGTCAGATGCTCACAGTCTTATGGAGGA...CAGTCTTATGGAGGAGCCCAAATAATATCTGGGGAAGTTAAAGTCCATATAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp CAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAGCTAACAAGGCATATTTaGAGTCCAGCTTTCATCCTT +
Preference number: 4 (lower is better)
Translates to: QSSVMSRVPMAPVLYSYQLTRHI*SPAFIL
Trigger: AAGGATGAAAGCTGGACTTCAAATATGCCTTGTTAG...CTGATAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp GCAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATCACTAACAAGGCATATTTaGAGTCCAGCTTTCATCCTT +
Preference number: 4 (lower is better)
Translates to: AVFSDVTCSHGTCIVLLSLTRHI*SPAFIL
Trigger: AAGGATGAAAGCTGGACTTCAAATATGCCTTGTTAG...TGATAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR GCA 90 bp CCAGGTTTCCTTATGCCACTGTGCTTCCTACTAAGTGTTGCGACCAGCTCTTGTTATGTAGGTGAGACTTaGTCATTATCTTGTAGTGTT +
Preference number: 4 (lower is better)
Translates to: PGFLMPLCFLLSVATSSCYVGET*SLSCSV
Trigger: AACACTACAAGATAATGAGCAAGTCTCACCTACATA...ACAAGAGCTGGTCGCAACACTTAGTAGGAAGCACAGTGGCATAAGGAAACCTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp CCATTATATCCCTGTTATCAAGCACAAGGTCAGGCACAGAGTAAGACTCAAAACTGTCACGTGTTCCCATaGCACCTGTATTGTACTCTT +
Preference number: 4 (lower is better)
Translates to: PLYPCYQAQGQAQSKTQNCHVFP*HLYCTL
Trigger: AAGAGTACAATACAGGTGCCATGGGAACACGTGACA...GTTTTGAGTCTTACTCTGTGCCTGACCTTGTGCTTGATAACAGGGATATAATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000453163.6
CDS-3UTR CCA 90 bp AAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCAAATAACAGTTTTGACTGGCACCGTCTGTaGAGCCATGATTATGTAGGT +
Preference number: 4 (lower is better)
Translates to: KYLQECPHHLVMSPNNSFDWHRL*SHDYVG
Trigger: ACCTACATAATCATGGCTCCACAGACGGTGCCAGTC...AAAACTGTTATTTGGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR GCA 90 bp TTGTCACAGAAGTCAGTCAATAGACCGTGTCTGAAAACTGGAATTCCAATATTCCAGTTCTTCCTCAAGTaGTTCACCCATGCTCCCTAT +
Preference number: 4 (lower is better)
Translates to: LSQKSVNRPCLKTGIPIFQFFLK*FTHAPY
Trigger: ATAGGGAGCATGGGTGAAGCACTTGAGGAAGAACTG...GAATATTGGAATTCCAGTTTTCAGACACGGTCTATTGACTGACTTCTGTGACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544866.5
CDS-3UTR GCA 90 bp CAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCTTTCATGGAGCCTTTTCATGTTaGTTGAGTTCTGACATGGCC +
Preference number: 4 (lower is better)
Translates to: QFHSHIYTNKAYLKSSFHGAFSC*LSSDMA
Trigger: GGCCATGTCAGAACTCAAGCAACATGAAAAGGCTCC...ATGAAAGCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000453163.6
CDS-3UTR CCA 90 bp CAGGCAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATTTGGAATGTATGACTaGTATGAACTACAAACCAGT +
Preference number: 4 (lower is better)
Translates to: QAVFSDVTCSHGTCIVLLFGMYD*YELQTS
Trigger: ACTGGTTTGTAGTTCATACCAGTCATACATTCCAAA...TAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTGCCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000453163.6
CDS-3UTR CCA 90 bp CTCATACAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCTGTCACGTGTTCCCATaGCACCTGTATTGTACTCTT +
Preference number: 4 (lower is better)
Translates to: LIQFHSHIYTNKAYLKSSCHVFP*HLYCTL
Trigger: AAGAGTACAATACAGGTGCCATGGGAACACGTGACA...GCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTGTATGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp GTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTCTAACAAGGCATATTTaGAGTCCAGCTTTCATCCTT +
Preference number: 4 (lower is better)
Translates to: VTCSHGTCIVLLSVIIWTLTRHI*SPAFIL
Trigger: AAGGATGAAAGCTGGACTTCAAATATGCCTTGTTAG...AGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATGGGAACACGTGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp CTCATACAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCTACTGTCCTATGTTTTaGAGTCACCTGGAAGAGTTC +
Preference number: 4 (lower is better)
Translates to: LIQFHSHIYTNKAYLKSSYCPMF*SHLEEF
Trigger: GAACTCTTCCAGGTGACTTCAAAACATAGGACAGTA...GCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTGTATGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR GCA 90 bp ACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTAAGTGTTTCCTTTCTCTaGCACTTCCACCTCCATTAC +
Preference number: 4 (lower is better)
Translates to: TCSHGTCIVLLSVIIWTLSVSFL*HFHLHY
Trigger: GTAATGGAGGTGGAAGTGGCAGAGAAAGGAAACACT...TAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATGGGAACACGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000453163.6
CDS-3UTR GCA 90 bp AGAGCCTGTGATAATCAGCTAATGATCAGACAAGTTTGTTGGGAGTTTTACCTAAAGACCATCGCCTTTTaGCTTTCAGTGTCTCATCTG +
Preference number: 4 (lower is better)
Translates to: RACDNQLMIRQVCWEFYLKTIAF*LSVSHL
Trigger: CAGATGAGACACTGAAAGGCAAAAGGCGATGGTCTT...TAGGTAAAACTCCCAACAAACTTGTCTGATCATTAGCTGATTATCACAGGCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR GCA 90 bp GACTGTGTAGCCTTCCTCTGTGGATGTACCAAAATTTATTTAATTCCCTGTCACGTCTTAGGAGCCGCTTaGTTAAACAGATGTATCAGA +
Preference number: 4 (lower is better)
Translates to: DCVAFLCGCTKIYLIPCHVLGAA*LNRCIR
Trigger: TCTGATACATCTGTTTAAGCAAGCGGCTCCTAAGAC...GTGACAGGGAATTAAATAAATTTTGGTACATCCACAGAGGAAGGCTACACAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR GCA 90 bp AAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCAAATAACAGTTTTGGAGAAACTCCATACTaGAGTTTCCCATATGGTGCT +
Preference number: 4 (lower is better)
Translates to: KYLQECPHHLVMSPNNSFGETPY*SFPYGA
Trigger: AGCACCATATGGGAAACTGCAGTATGGAGTTTCTCC...AAAACTGTTATTTGGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR GCA 90 bp AAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCAAATAACAGTTTTCAGCTTGCCTGGGTATaGCAAAATACCTGCAAGAAT +
Preference number: 4 (lower is better)
Translates to: KYLQECPHHLVMSPNNSFQLAWV*QNTCKN
Trigger: ATTCTTGCAGGTATTTTGGCATACCCAGGCAAGCTG...AAAACTGTTATTTGGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp CAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCTTTCATTGTCACGTGTTCCCATaGCACCTGTATTGTACTCTT +
Preference number: 4 (lower is better)
Translates to: QFHSHIYTNKAYLKSSFHCHVFP*HLYCTL
Trigger: AAGAGTACAATACAGGTGCCATGGGAACACGTGACA...ATGAAAGCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp CATTATATGGACTTTAACTTCCCCAGATATTATTTGGGCTCCTCCATAAGACTGTGTCACGTGTTCCCATaGCACCTGTATTGTACTCTT +
Preference number: 4 (lower is better)
Translates to: HYMDFNFPRYYLGSSIRLCHVFP*HLYCTL
Trigger: AAGAGTACAATACAGGTGCCATGGGAACACGTGACA...CAGTCTTATGGAGGAGCCCAAATAATATCTGGGGAAGTTAAAGTCCATATAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp TCTGACCACTGGAGTGTTGCTTCCCATTATATCCCCATGCTCCCTATAATCTCTGAAGAGTTCTTAGTGTaGTTATATGACTACATCAAG +
Preference number: 4 (lower is better)
Translates to: SDHWSVASHYIPMLPIISEEFLV*LYDYIK
Trigger: CTTGATGTAGTCATATAACCACACTAAGAACTCTTC...AGAGATTATAGGGAGCATGGGGATATAATGGGAAGCAACACTCCAGTGGTCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544336.5
CDS-3UTR CCA 90 bp AGGCAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATGAAGAGTTCTTAGTGTaGTTATATGACTACATCAAG +
Preference number: 4 (lower is better)
Translates to: RQSSVMSRVPMAPVLYSYEEFLV*LYDYIK
Trigger: CTTGATGTAGTCATATAACCACACTAAGAACTCTTC...ATAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTGCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp GTGCTTCCTACTAAGTGTTGCGACCAGCTCTTGTCACTAGTTGATGACAACTTAAAACGTGAGGATTTATaGTGGCAATGCATTTCAGTT +
Preference number: 4 (lower is better)
Translates to: VLPTKCCDQLLSLVDDNLKREDL*WQCISV
Trigger: AACTGAAATGCATTGCCACCATAAATCCTCACGTTT...TAAGTTGTCATCAACTAGTGACAAGAGCTGGTCGCAACACTTAGTAGGAAGCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp TCCCATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTAACTTCCTACTGTCCTATGTTTTaGAGTCACCTGGAAGAGTTC +
Preference number: 4 (lower is better)
Translates to: SHGTCIVLLSVIIWTLTSYCPMF*SHLEEF
Trigger: GAACTCTTCCAGGTGACTTCAAAACATAGGACAGTA...GGAAGTTAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp GACTGTGTAGCCTTCCTCTGTGGATGTACCAAAATTTATTTAATTCCCTGTCACTCATACTCACCAACCTaGGGTTTGGTATTTCTCAAA +
Preference number: 4 (lower is better)
Translates to: DCVAFLCGCTKIYLIPCHSYSPT*GLVFLK
Trigger: TTTGAGAAATACCAAACCTCAGGTTGGTGAGTATGA...GTGACAGGGAATTAAATAAATTTTGGTACATCCACAGAGGAAGGCTACACAGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp AGAGCCTGTGATAATCAGCTAATGATCAGACAAGTTTGTTGGGAGTTTTACCTATGGCTGGACAGTATCTaGACCAAGCAGATCTTAAAA +
Preference number: 4 (lower is better)
Translates to: RACDNQLMIRQVCWEFYLWLDSI*TKQILK
Trigger: TTTTAAGATCTGCTTGGTTCAGATACTGTCCAGCCA...TAGGTAAAACTCCCAACAAACTTGTCTGATCATTAGCTGATTATCACAGGCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp CATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTAACTTCCCCATCCTCACCTTCAAAATaGGGCAGTTTCTCACTCATT +
Preference number: 4 (lower is better)
Translates to: HGTCIVLLSVIIWTLTSPSSPSK*GSFSLI
Trigger: AATGAGTGAGAAACTGCCCCATTTTGAAGGTGAGGA...TGGGGAAGTTAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000453163.6
CDS-3UTR CCA 90 bp GTGCTTCCTACTAAGTGTTGCGACCAGCTCTTGTCACTAGTTGATGACAACTTATGTAGCCTTCCTCTGTaGATGTACCAAAATTTATTT +
Preference number: 4 (lower is better)
Translates to: VLPTKCCDQLLSLVDDNLCSLPL*MYQNLF
Trigger: AAATAAATTTTGGTACATCCACAGAGGAAGGCTACA...TAAGTTGTCATCAACTAGTGACAAGAGCTGGTCGCAACACTTAGTAGGAAGCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp AGAGCCTGTGATAATCAGCTAATGATCAGACAAGTTTGTTGGGAGTTTTACCTATTCTTTCTGGTGATTTaGACCAGTTTGTCTCCCTCT +
Preference number: 4 (lower is better)
Translates to: RACDNQLMIRQVCWEFYLFFLVI*TSLSPS
Trigger: AGAGGGAGACAAACTGGTCCAAATCACCAGAAAGAA...TAGGTAAAACTCCCAACAAACTTGTCTGATCATTAGCTGATTATCACAGGCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp CATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTAACTTCCCCACTAACAAGGCATATTTaGAGTCCAGCTTTCATCCTT +
Preference number: 4 (lower is better)
Translates to: HGTCIVLLSVIIWTLTSPLTRHI*SPAFIL
Trigger: AAGGATGAAAGCTGGACTTCAAATATGCCTTGTTAG...TGGGGAAGTTAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR TCA 90 bp ATACTCATACAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCTACTGTCCTATGTTTTaGAGTCACCTGGAAGAGTTC +
Preference number: 4 (lower is better)
Translates to: ILIQFHSHIYTNKAYLKSYCPMF*SHLEEF
Trigger: GAACTCTTCCAGGTGACTTCAAAACATAGGACAGTA...GGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTGTATGAGTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR GCA 90 bp GGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTAACTTCCCCAGATAAACTGTCCATCTTTTaGAAGCAGGAGCCTTTTCAT +
Preference number: 4 (lower is better)
Translates to: GTCIVLLSVIIWTLTSPDKLSIF*KQEPFH
Trigger: ATGAAAAGGCTCCTGCTTGCAAAAGATGGACAGTTT...ATCTGGGGAAGTTAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000453163.6
CDS-3UTR CCA 90 bp ATACAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCTTTTCCTCACCTTCAAAATaGGGCAGTTTCTCACTCATT +
Preference number: 4 (lower is better)
Translates to: IQFHSHIYTNKAYLKSSFSSPSK*GSFSLI
Trigger: AATGAGTGAGAAACTGCCCCATTTTGAAGGTGAGGA...AAAGCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTGTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000453163.6
CDS-3UTR CCA 90 bp AAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCAAATAACAGTTTTTTTAAAAACCTAGGGTaGGAAATGCTCAGAGTGAGA +
Preference number: 4 (lower is better)
Translates to: KYLQECPHHLVMSPNNSFFKNLG*EMLRVR
Trigger: TCTCACTCTGAGCATTTCCCACCCTAGGTTTTTAAA...AAAACTGTTATTTGGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTT
39% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp AGAGCCTGTGATAATCAGCTAATGATCAGACAAGTTTGTTGGGAGTTTTACCTACGTGAGGATTTATGGTaGCAATGCATTTCAGTTAAC +
Preference number: 4 (lower is better)
Translates to: RACDNQLMIRQVCWEFYLREDLW*QCISVN
Trigger: GTTAACTGAAATGCATTGCCACCATAAATCCTCACG...TAGGTAAAACTCCCAACAAACTTGTCTGATCATTAGCTGATTATCACAGGCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR TCA 90 bp TTATCAGTCATTATATGGACTTTAACTTCCCCAGATATTATTTGGGCTCCTCCACCACCTCCATTACTCTaGAGTAAATTCCACACATAT +
Preference number: 4 (lower is better)
Translates to: LSVIIWTLTSPDIIWAPPPPPLL*SKFHTY
Trigger: ATATGTGTGGAATTTACTTCAGAGTAATGGAGGTGG...TGGAGGAGCCCAAATAATATCTGGGGAAGTTAAAGTCCATATAATGACTGATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000453163.6
CDS-3UTR GCA 90 bp AAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCAAATAACAGTTTTTTCAAGGCTTTAAGATaGCTTTACGGTGTATCTGTT +
Preference number: 4 (lower is better)
Translates to: KYLQECPHHLVMSPNNSFFKALR*LYGVSV
Trigger: AACAGATACACCGTAAAGGCATCTTAAAGCCTTGAA...AAAACTGTTATTTGGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTT
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CCA 90 bp TTGTCACAGAAGTCAGTCAATAGACCGTGTCTGAAAACTGGAATTCCAATATTCACCGTGTCTGAAAACTaGAATTCCAATATTCTCTTG +
Preference number: 4 (lower is better)
Translates to: LSQKSVNRPCLKTGIPIFTVSEN*NSNILL
Trigger: CAAGAGAATATTGGAATTCCAGTTTTCAGACACGGT...GAATATTGGAATTCCAGTTTTCAGACACGGTCTATTGACTGACTTCTGTGACAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544866.5
CDS-3UTR CCA 90 bp TCCCATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTAACTTCCTTTGGAATGTATGACTaGTATGAACTACAAACCAGT +
Preference number: 4 (lower is better)
Translates to: SHGTCIVLLSVIIWTLTSFGMYD*YELQTS
Trigger: ACTGGTTTGTAGTTCATACCAGTCATACATTCCAAA...GGAAGTTAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATGGGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000453163.6
CDS-3UTR CCA 90 bp GGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTAACTTCCCCAGATGAAGAGTTCTTAGTGTaGTTATATGACTACATCAAG +
Preference number: 4 (lower is better)
Translates to: GTCIVLLSVIIWTLTSPDEEFLV*LYDYIK
Trigger: CTTGATGTAGTCATATAACCACACTAAGAACTCTTC...ATCTGGGGAAGTTAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp CATTATATGGACTTTAACTTCCCCAGATATTATTTGGGCTCCTCCATAAGACTGGAAGAGTTCTTAGTGTaGTTATATGACTACATCAAG +
Preference number: 4 (lower is better)
Translates to: HYMDFNFPRYYLGSSIRLEEFLV*LYDYIK
Trigger: CTTGATGTAGTCATATAACCACACTAAGAACTCTTC...CAGTCTTATGGAGGAGCCCAAATAATATCTGGGGAAGTTAAAGTCCATATAATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CCA 90 bp TTATCAGTCATTATATGGACTTTAACTTCCCCAGATATTATTTGGGCTCCTCCAGAAGAGTTCTTAGTGTaGTTATATGACTACATCAAG +
Preference number: 4 (lower is better)
Translates to: LSVIIWTLTSPDIIWAPPEEFLV*LYDYIK
Trigger: CTTGATGTAGTCATATAACCACACTAAGAACTCTTC...TGGAGGAGCCCAAATAATATCTGGGGAAGTTAAAGTCCATATAATGACTGATAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CAA 90 bp CTCATCTGTAAGCAGGGCCGCTGGCTGACCAAGATCAGTTCTGAAGGTCCAGCCGGCCGCCCGCCCACCTaGCTGGGGAACTGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: LICKQGRWLTKISSEGPAGRPPT*LGNCSL
Trigger: CAGCGAGCAGTTCCCCAGCAAGGTGGGCGGGCGGCC...GGCTGGACCTTCAGAACTGATCTTGGTCAGCCAGCGGCCCTGCTTACAGATGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CAA 90 bp AACTGGCCAGATGAAAGAGAAACTTTTAAGGGGCCCTTCTGCGTGCCCGACACTGGCCGCCCGCCCACCTaGCTGGGGAACTGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: NWPDERETFKGPFCVPDTGRPPT*LGNCSL
Trigger: CAGCGAGCAGTTCCCCAGCAAGGTGGGCGGGCGGCC...AGTGTCGGGCACGCAGAAGGGCCCCTTAAAAGTTTCTCTTTCATCTGGCCAGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000453163.6
CDS CCA 90 bp GCGTGGGCACAGTTAGAAGCTTATGTAGCAAAAATGAGCACATCCTaGAAGGGCCCGGGAGAAGGTGCTCCTGGGGCAGCGCGGAGAGGG +
Preference number: 5 (lower is better)
Translates to: AWAQLEAYVAKMSTS*KGPGEGAPGAARRG
Trigger: CCCTCTCCGCGCTGCCCCAGGAGCACCTTCTCCCGGGCCCTTCCAGGATGTGCTCATTTTTGCTACATAAGCTTCTAACTGTGCCCACGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000538195.1
CDS-3UTR CAA 90 bp GCAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAAGCGGCGCATACACCTaGCTGGGGAACTGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: AVFSDVTCSHGTCIVLLSSGAYT*LGNCSL
Trigger: CAGCGAGCAGTTCCCCAGCAAGGTGTATGCGCCGCT...TGATAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000537445.5
CDS-3UTR CAA 90 bp AGTCATTATATGGACTTTAACTTCCCCAGATATTATTTGGGCTCCTCCATAAGAGGCCGCCCGCCCACCTaGCTGGGGAACTGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: SHYMDFNFPRYYLGSSIRGRPPT*LGNCSL
Trigger: CAGCGAGCAGTTCCCCAGCAAGGTGGGCGGGCGGCC...TCTTATGGAGGAGCCCAAATAATATCTGGGGAAGTTAAAGTCCATATAATGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000453163.6
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CAA 90 bp ATACAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCTTTAGCGGCGCATACACCTaGCTGGGGAACTGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: IQFHSHIYTNKAYLKSSFSGAYT*LGNCSL
Trigger: CAGCGAGCAGTTCCCCAGCAAGGTGTATGCGCCGCT...AAAGCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000537445.5
CDS-3UTR CAA 90 bp GGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCGCCTTTTGCCTTAGTCTTAGGAGCCGCTaGCTTAAACAGATGTATCAG +
Preference number: 5 (lower is better)
Translates to: GNLYTMLTRKGKTIAFCLSLRSR*LKQMYQ
Trigger: CTGATACATCTGTTTAAGCAAGCGGCTCCTAAGACT...AAGGCAAAAGGCGATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CAA 90 bp GGAGAGCAGTGTAGATATCCTCATTGTCACAGAAGTCAGTCAATAGACCGTGTCAATTCCAATATTCTCTaGGCACCACAGGGGCAATCT +
Preference number: 5 (lower is better)
Translates to: GEQCRYPHCHRSQSIDRVNSNIL*APQGQS
Trigger: AGATTGCCCCTGTGGTGCCAAGAGAATATTGGAATT...GACACGGTCTATTGACTGACTTCTGTGACAATGAGGATATCTACACTGCTCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544866.5
CDS-3UTR CAA 90 bp ATTTTCATTATGTATCATGTTTATCGTATAGGCATGAACACACGCGCGGCCCCTGCCTTTTCATGTTGCTaGAGTTCTGACATGGCCCTA +
Preference number: 5 (lower is better)
Translates to: IFIMYHVYRIGMNTRAAPAFSCC*SSDMAL
Trigger: TAGGGCCATGTCAGAACTCAAGCAACATGAAAAGGC...AGGGGCCGCGCGTGTGTTCATGCCTATACGATAAACATGATACATAATGAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000453163.6
CDS-3UTR CAA 90 bp GCGATAGGGAACCTGTATACAATGCTGACACGGAAAGGGAAGACCATCGCCTTTAATGATCAGACAAGTTaGTTGGGAGTTTTACCTAAG +
Preference number: 5 (lower is better)
Translates to: AIGNLYTMLTRKGKTIAFNDQTS*LGVLPK
Trigger: CTTAGGTAAAACTCCCAACAAACTTGTCTGATCATT...AAAGGCGATGGTCTTCCCTTTCCGTGTCAGCATTGTATACAGGTTCCCTATCGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CAA 90 bp GTGCTTCCTACTAAGTGTTGCGACCAGCTCTTGTCACTAGTTGATGACAACTTATTTCTTTCTGGTGATTaGGACCAGTTTGTCTCCCTC +
Preference number: 5 (lower is better)
Translates to: VLPTKCCDQLLSLVDDNLFLSGD*DQFVSL
Trigger: GAGGGAGACAAACTGGTCCAAATCACCAGAAAGAAA...TAAGTTGTCATCAACTAGTGACAAGAGCTGGTCGCAACACTTAGTAGGAAGCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CAA 90 bp TTTCATTATGTATCATGTTTATCGTATAGGCATGAACACACGCGCGGCCCCTTCCCCATGGCACCTGTATaGTACTCTTATCAGTCATTA +
Preference number: 5 (lower is better)
Translates to: FHYVSCLSYRHEHTRGPFPMAPV*YSYQSL
Trigger: TAATGACTGATAAGAGTACAATACAGGTGCCATGGG...GAAGGGGCCGCGCGTGTGTTCATGCCTATACGATAAACATGATACATAATGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CAA 90 bp CAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAGACTAACAAGGCATATTaGAAGTCCAGCTTTCATCCT +
Preference number: 5 (lower is better)
Translates to: QSSVMSRVPMAPVLYSYQTNKAY*KSSFHP
Trigger: AGGATGAAAGCTGGACTTCAAATATGCCTTGTTAGT...CTGATAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CAA 90 bp TGCATTTCAGTTAACAGGGATGTGTTAGGGGACAATGTGAGCCAATGTAGATTATGTTGCGACCAGCTCTaGTCACTAGTTGATGACAAC +
Preference number: 5 (lower is better)
Translates to: CISVNRDVLGDNVSQCRLCCDQL*SLVDDN
Trigger: GTTGTCATCAACTAGTGACAAGAGCTGGTCGCAACA...TAATCTACATTGGCTCACATTGTCCCCTAACACATCCCTGTTAACTGAAATGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CAA 90 bp AGGCAGTCTTCAGTGATGTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATGACTCAAAACATGTTTaGGAATGTATGACTGGTATG +
Preference number: 5 (lower is better)
Translates to: RQSSVMSRVPMAPVLYSYDSKHV*ECMTGM
Trigger: CATACCAGTCATACATTCCAAAACATGTTTTGAGTC...ATAAGAGTACAATACAGGTGCCATGGGAACACGTGACATCACTGAAGACTGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000453163.6
CDS-3UTR CAA 90 bp GTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTCCCATGGCACCTGTATaGTACTCTTATCAGTCATTA +
Preference number: 5 (lower is better)
Translates to: VTCSHGTCIVLLSVIIWTPMAPV*YSYQSL
Trigger: TAATGACTGATAAGAGTACAATACAGGTGCCATGGG...AGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATGGGAACACGTGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CAA 90 bp AAATACCTGCAAGAATGTCCACATCATCTGGTGATGTCCCCAAATAACAGTTTTAATTCCAATATTCTCTaGGCACCACAGGGGCAATCT +
Preference number: 5 (lower is better)
Translates to: KYLQECPHHLVMSPNNSFNSNIL*APQGQS
Trigger: AGATTGCCCCTGTGGTGCCAAGAGAATATTGGAATT...AAAACTGTTATTTGGGGACATCACCAGATGATGTGGACATTCTTGCAGGTATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000541970.6
CDS-3UTR CAA 90 bp CTCATACAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCCCCATGGCACCTGTATaGTACTCTTATCAGTCATTA +
Preference number: 5 (lower is better)
Translates to: LIQFHSHIYTNKAYLKSSPMAPV*YSYQSL
Trigger: TAATGACTGATAAGAGTACAATACAGGTGCCATGGG...GCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTGTATGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CAA 90 bp GTCACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTACTAACAAGGCATATTaGAAGTCCAGCTTTCATCCT +
Preference number: 5 (lower is better)
Translates to: VTCSHGTCIVLLSVIIWTTNKAY*KSSFHP
Trigger: AGGATGAAAGCTGGACTTCAAATATGCCTTGTTAGT...AGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATGGGAACACGTGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CAA 90 bp TCCCATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTAACTTCCCAAACTGTCCATCTTTaGCAAGCAGGAGCCTTTTCA +
Preference number: 5 (lower is better)
Translates to: SHGTCIVLLSVIIWTLTSQTVHL*QAGAFS
Trigger: TGAAAAGGCTCCTGCTTGCAAAAGATGGACAGTTTG...GGAAGTTAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000453163.6
CDS-3UTR CAA 90 bp CATTATATGGACTTTAACTTCCCCAGATATTATTTGGGCTCCTCCATAAGACTGCCCATGGCACCTGTATaGTACTCTTATCAGTCATTA +
Preference number: 5 (lower is better)
Translates to: HYMDFNFPRYYLGSSIRLPMAPV*YSYQSL
Trigger: TAATGACTGATAAGAGTACAATACAGGTGCCATGGG...CAGTCTTATGGAGGAGCCCAAATAATATCTGGGGAAGTTAAAGTCCATATAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CAA 90 bp CACGTGTTCCCATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTGACTCAAAACATGTTTaGGAATGTATGACTGGTATG +
Preference number: 5 (lower is better)
Translates to: HVFPWHLYCTLISHYMDFDSKHV*ECMTGM
Trigger: CATACCAGTCATACATTCCAAAACATGTTTTGAGTC...AAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATGGGAACACGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000443345.2
ENST00000453163.6
CDS-3UTR CAA 90 bp AGTCATTATATGGACTTTAACTTCCCCAGATATTATTTGGGCTCCTCCATAAGACCCATGGCACCTGTATaGTACTCTTATCAGTCATTA +
Preference number: 5 (lower is better)
Translates to: SHYMDFNFPRYYLGSSIRPMAPV*YSYQSL
Trigger: TAATGACTGATAAGAGTACAATACAGGTGCCATGGG...TCTTATGGAGGAGCCCAAATAATATCTGGGGAAGTTAAAGTCCATATAATGACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CAA 90 bp CATGGCACCTGTATTGTACTCTTATCAGTCATTATATGGACTTTAACTTCCCCAACTAACAAGGCATATTaGAAGTCCAGCTTTCATCCT +
Preference number: 5 (lower is better)
Translates to: HGTCIVLLSVIIWTLTSPTNKAY*KSSFHP
Trigger: AGGATGAAAGCTGGACTTCAAATATGCCTTGTTAGT...TGGGGAAGTTAAAGTCCATATAATGACTGATAAGAGTACAATACAGGTGCCATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CAA 90 bp ATACAGTTCCACAGTCACATTTACACTAACAAGGCATATTTGAAGTCCAGCTTTACTAACAAGGCATATTaGAAGTCCAGCTTTCATCCT +
Preference number: 5 (lower is better)
Translates to: IQFHSHIYTNKAYLKSSFTNKAY*KSSFHP
Trigger: AGGATGAAAGCTGGACTTCAAATATGCCTTGTTAGT...AAAGCTGGACTTCAAATATGCCTTGTTAGTGTAAATGTGACTGTGGAACTGTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS-3UTR CAA 90 bp AGTCATTATATGGACTTTAACTTCCCCAGATATTATTTGGGCTCCTCCATAAGAACTAACAAGGCATATTaGAAGTCCAGCTTTCATCCT +
Preference number: 5 (lower is better)
Translates to: SHYMDFNFPRYYLGSSIRTNKAY*KSSFHP
Trigger: AGGATGAAAGCTGGACTTCAAATATGCCTTGTTAGT...TCTTATGGAGGAGCCCAAATAATATCTGGGGAAGTTAAAGTCCATATAATGACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000443345.2
ENST00000453163.6
ENST00000537445.5
ENST00000544336.5
ENST00000614056.4
CDS TCA 72 bp AGAAGGTGCTCCTGGGGCAGCGCGGAGAGGGAGCTCTaGGGCTGGGGCGGCAGCGGTGCTTGCCGCCGTCCC +
Preference number: 6 (lower is better)
Translates to: RRCSWGSAEREL*GWGGSGACRRP
Trigger: GGGACGGCGGCAAGCACCGCTGCCGCCCCAGCCTCAGAGCTCCCTCTCCGCGCTGCCCCAGGAGCACCTTCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000538195.1
CDS TCA 72 bp GTAACATGCTATCTACTCCATGAATGTTCCTACTCTTaGTGTAGCACTGACCCAAAAGGCATGTCACAGTTC +
Preference number: 6 (lower is better)
Translates to: VTCYLLHECSYS*CSTDPKGMSQF
Trigger: GAACTGTGACATGCCTTTTGGGTCAGTGCTACATCAAGAGTAGGAACATTCATGGAGTAGATAGCATGTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000543284.1
CDS GCA 72 bp TATGAATATATTGTGAAGGGACTAAGAATGAGCCTCTaGTCTAATTGCAGAATTCTGCCCAGAGTCTGTGCC +
Preference number: 6 (lower is better)
Translates to: YEYIVKGLRMSL*SNCRILPRVCA
Trigger: GGCACAGACTCTGGGCAGAATTCTGCAATTAGAGCAGAGGCTCATTCTTAGTCCCTTCACAATATATTCATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000543284.1
CDS TCA 72 bp ATGCTTTTACTACCTAATGTTGGCAACTTAATCCTATaGATATATTGTGAAGGGACTAAGAATGAGCCTCTG +
Preference number: 6 (lower is better)
Translates to: MLLLPNVGNLIL*IYCEGTKNEPL
Trigger: CAGAGGCTCATTCTTAGTCCCTTCACAATATATTCATAGGATTAAGTTGCCAACATTAGGTAGTAAAAGCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000543284.1