Pregenerated sensors for PCGF6 (Homo sapiens)
Ensembl gene IDs: ENSG00000156374Ensembl transcript IDs: ENST00000337211.8, ENST00000369847.4, ENST00000490296.1, ENST00000647574.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATTGCTTGAAACCGGAAGACCAAGATCGCGCCACTaGCCTCCAGCCAGGTTTAGG | + |
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Preference number: 2 (lower is better) Translates to: VIPATLEAEVAELLETGRPRSRH*PPARFR Trigger: CCTAAACCTGGCTGGAGGGCAGTGGCGCGATCTTGG...TCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| 3UTR CAA 90 bp | AGGGCACTTGTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATaGCTTGAAACCGGAAGACTGAGGACTGAGGTTGCAGTAAGCCAA | + |
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Preference number: 2 (lower is better) Translates to: RALVIPATLEAEVAE*LETGRLRTEVAVSQ Trigger: TTGGCTTACTGCAACCTCAGTCCTCAGTCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTACAAGTGCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| 3UTR TCA 72 bp | ATGTTGCCGAGGCTGGTCTCAACTCCTAACTTCAAGTaGTCCTCCCGTCCTGGTCTCCTAAAGTGCTGGGAT | + |
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Preference number: 3 (lower is better) Translates to: MLPRLVSTPNFK*SSRPGLLKCWD Trigger: ATCCCAGCACTTTAGGAGACCAGGACGGGAGGATCACTTGAAGTTAGGAGTTGAGACCAGCCTCGGCAACAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| CDS-3UTR TCA 90 bp | GTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATTGCTTGAAACCGGAAGACCTCGAAGCGGCCTCTaGAGCGGCCCAGGCTGCGCT | + |
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Preference number: 4 (lower is better) Translates to: VIPATLEAEVAELLETGRPRSGL*SGPGCA Trigger: AGCGCAGCCTGGGCCGCTTCAGAGGCCGCTTCGAGG...TCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| CDS-3UTR CCA 90 bp | GTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATTGCTTGAAACCGGAAGACCGCGACCCCCTCCATaGTCGGGAGAGACACCAGGC | + |
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Preference number: 4 (lower is better) Translates to: VIPATLEAEVAELLETGRPRPPP*SGETPG Trigger: GCCTGGTGTCTCTCCCGACCATGGAGGGGGTCGCGG...TCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| CDS-3UTR GCA 90 bp | GTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATTGCTTGAAACCGGAAGACGGAGGCGGCAAGGCTaGAGCTCCCTCGGTTTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: VIPATLEAEVAELLETGRRRRQG*SSLGFG Trigger: GCCAAAACCGAGGGAGCTGCAGCCTTGCCGCCTCCG...TCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| CDS-3UTR TCA 90 bp | GTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATTGCTTGAAACCGGAAGAAGCCTCAACGAGAAGTaGCTCATGTCCTCCTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: VIPATLEAEVAELLETGRSLNEK*LMSSSS Trigger: GGAGGAGGAGGACATGAGTCACTTCTCGTTGAGGCT...TCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| CDS-3UTR GCA 90 bp | GTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATTGCTTGAAACCGGAAGAAGGGTTTCCCCATGTTaGCGAGGCTGGTCTCAACTC | + |
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Preference number: 4 (lower is better) Translates to: VIPATLEAEVAELLETGRRVSPC*RGWSQL Trigger: GAGTTGAGACCAGCCTCGGCAACATGGGGAAACCCT...TCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| 3UTR CAA 72 bp | GTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATaGCTTGAAACCGGAAGACTGAGGACTGAGGTTGCA | + |
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Preference number: 4 (lower is better) Translates to: VIPATLEAEVAE*LETGRLRTEVA Trigger: TGCAACCTCAGTCCTCAGTCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| CDS-3UTR TCA 90 bp | GTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATTGCTTGAAACCGGAAGACGGAAGACTGAGGACTaGGGTTGCAGTAAGCCAAGA | + |
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Preference number: 4 (lower is better) Translates to: VIPATLEAEVAELLETGRRKTED*GCSKPR Trigger: TCTTGGCTTACTGCAACCTCAGTCCTCAGTCTTCCG...TCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| CDS-3UTR CCA 90 bp | GTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATTGCTTGAAACCGGAAGACTCTGGAGGCTGAGGTaGCAGAATTGCTTGAAACCG | + |
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Preference number: 4 (lower is better) Translates to: VIPATLEAEVAELLETGRLWRLR*QNCLKP Trigger: CGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAG...TCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| CDS-3UTR CCA 90 bp | GTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATTGCTTGAAACCGGAAGACCATGTTGCCGAGGCTaGTCTCAACTCCTAACTTCA | + |
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Preference number: 4 (lower is better) Translates to: VIPATLEAEVAELLETGRPCCRG*SQLLTS Trigger: TGAAGTTAGGAGTTGAGACCAGCCTCGGCAACATGG...TCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| CDS-3UTR CCA 90 bp | GTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATTGCTTGAAACCGGAAGATTCCAATGGTTTCAGTaGAGACAGGGTTTCCCCATG | + |
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Preference number: 4 (lower is better) Translates to: VIPATLEAEVAELLETGRFQWFQ*RQGFPM Trigger: CATGGGGAAACCCTGTCTCCACTGAAACCATTGGAA...TCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| CDS-3UTR GCA 90 bp | GTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATTGCTTGAAACCGGAAGAACAAGCAGACCATCCTaGATTGCTGCATCACCTATT | + |
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Preference number: 4 (lower is better) Translates to: VIPATLEAEVAELLETGRTSRPS*IAASPI Trigger: AATAGGTGATGCAGCAATGCAGGATGGTCTGCTTGT...TCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| CDS-3UTR CCA 90 bp | GTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATTGCTTGAAACCGGAAGAAAAATTAGCTGGGTGTaGAGGAGGGCACTTGTAATC | + |
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Preference number: 4 (lower is better) Translates to: VIPATLEAEVAELLETGRKISWV*RRALVI Trigger: GATTACAAGTGCCCTCCTCCACACCCAGCTAATTTT...TCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| CDS-3UTR CCA 90 bp | GTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATTGCTTGAAACCGGAAGAAATACAAAAATTAGCTaGGTGTGGAGGAGGGCACTT | + |
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Preference number: 4 (lower is better) Translates to: VIPATLEAEVAELLETGRNTKIS*VWRRAL Trigger: AAGTGCCCTCCTCCACACCCAGCTAATTTTTGTATT...TCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| CDS-3UTR CCA 90 bp | GTAATCCCCGCTACTCTGGAGGCTGAGGTGGCAGAATTGCTTGAAACCGGAAGAAAACTTCTTTTCCAATaGTTTCAGTGGAGACAGGGT | + |
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Preference number: 4 (lower is better) Translates to: VIPATLEAEVAELLETGRKLLFQ*FQWRQG Trigger: ACCCTGTCTCCACTGAAACCATTGGAAAAGAAGTTT...TCTTCCGGTTTCAAGCAATTCTGCCACCTCAGCCTCCAGAGTAGCGGGGATTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000647574.1 |
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| CDS TCA 72 bp | CTTCCAACTCCTCGTCCTCGTCCTCGAAGCGGCCTCTaGAGCGGCCCAGGCTGCGCTCCGGCTCCAGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: LPTPRPRPRSGL*SGPGCAPAPAQ Trigger: CTGAGCTGGAGCCGGAGCGCAGCCTGGGCCGCTTCAGAGGCCGCTTCGAGGACGAGGACGAGGAGTTGGAAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000337211.8 ENST00000369847.4 ENST00000490296.1 ENST00000647574.1 |
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