Pregenerated sensors for PCDHGB1 (Homo sapiens)
Ensembl gene IDs: ENSG00000254221Ensembl transcript IDs: ENST00000523390.2, ENST00000611598.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GTGTCATCGCCATTTTGGGAGCCGCTGGTGCCGGGTCTCTGGGCCTaGGAGAAACGCCAGTCCGTGTTGGGCGGGGCTTGGTGCGAAGAC | + |
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Preference number: 5 (lower is better) Translates to: VSSPFWEPLVPGLWA*EKRQSVLGGAWCED Trigger: GTCTTCGCACCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000523390.2 |
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| CDS CCA 90 bp | CTGGCTCTCTGCATTTCAGGAACTCTCCGCGGAGCTTCTTTCCTCTaGGATGTTTTTCAAAAAGAAATGGCAGCACCCTGGACTTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: LALCISGTLRGASFL*DVFQKEMAAPWTSV Trigger: CACAGAAGTCCAGGGTGCTGCCATTTCTTTTTGAAAAACATCCCAGAGGAAAGAAGCTCCGCGGAGAGTTCCTGAAATGCAGAGAGCCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000523390.2 ENST00000611598.1 |
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| CDS CCA 90 bp | GCAGGAAGGGAAACAGTACCTGACTTTTCATCATTTCGGCTTCTCTaGCTCTCTGCATTTCAGGAACTCTCCGCGGAGCTTCTTTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: AGRETVPDFSSFRLL*LSAFQELSAELLSS Trigger: AGAGGAAAGAAGCTCCGCGGAGAGTTCCTGAAATGCAGAGAGCCAGAGAAGCCGAAATGATGAAAAGTCAGGTACTGTTTCCCTTCCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000523390.2 ENST00000611598.1 |
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| CDS CCA 90 bp | GATGTCGCCAGTATTTGGATTGAGATTGAAGAGGCTGGTACTTATTaGGGAATTGAGGAAGGCATAGGTGATCTCTGCATTAATGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: DVASIWIEIEEAGTY*GIEEGIGDLCINAL Trigger: GAGGGCATTAATGCAGAGATCACCTATGCCTTCCTCAATTCCCCAATAAGTACCAGCCTCTTCAATCTCAATCCAAATACTGGCGACATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000523390.2 ENST00000611598.1 |
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| CDS TCA 90 bp | ATCCTTGTCTCGCACTTTTATGAGGGCTATTACAGTTCCAAGGTCTaGATCCTCTGGAATCTGGTTAGAGAAGGACATGAATGTCACCTC | + |
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Preference number: 5 (lower is better) Translates to: ILVSHFYEGYYSSKV*ILWNLVREGHECHL Trigger: GAGGTGACATTCATGTCCTTCTCTAACCAGATTCCAGAGGATTCAGACCTTGGAACTGTAATAGCCCTCATAAAAGTGCGAGACAAGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000523390.2 ENST00000611598.1 |
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| CDS CCA 90 bp | CTCTTCAAAATCCAATGTGCCATTGGTTGTGATGTCGCCAGTATTTaGATTGAGATTGAAGAGGCTGGTACTTATTGGGGAATTGAGGAA | + |
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Preference number: 5 (lower is better) Translates to: LFKIQCAIGCDVASI*IEIEEAGTYWGIEE Trigger: TTCCTCAATTCCCCAATAAGTACCAGCCTCTTCAATCTCAATCCAAATACTGGCGACATCACAACCAATGGCACATTGGATTTTGAAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000523390.2 ENST00000611598.1 |
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| CDS CCA 72 bp | CGGGTCTCTGGGCCTGAGAGAAACGCCAGTCCGTGTTaGGCGGGGCTTGGTGCGAAGACAAAGAAGGGTCAT | + |
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Preference number: 6 (lower is better) Translates to: RVSGPERNASPC*AGLGAKTKKGH Trigger: ATGACCCTTCTTTGTCTTCGCACCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000523390.2 |
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| CDS CCA 72 bp | GAAACAGTACCTGACTTTTCATCATTTCGGCTTCTCTaGCTCTCTGCATTTCAGGAACTCTCCGCGGAGCTT | + |
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Preference number: 6 (lower is better) Translates to: ETVPDFSSFRLL*LSAFQELSAEL Trigger: AAGCTCCGCGGAGAGTTCCTGAAATGCAGAGAGCCAGAGAAGCCGAAATGATGAAAAGTCAGGTACTGTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000523390.2 ENST00000611598.1 |
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| CDS CCA 72 bp | ATCCAATGTGCCATTGGTTGTGATGTCGCCAGTATTTaGATTGAGATTGAAGAGGCTGGTACTTATTGGGGA | + |
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Preference number: 6 (lower is better) Translates to: IQCAIGCDVASI*IEIEEAGTYWG Trigger: TCCCCAATAAGTACCAGCCTCTTCAATCTCAATCCAAATACTGGCGACATCACAACCAATGGCACATTGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000523390.2 ENST00000611598.1 |
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| CDS CAA 72 bp | CCATTGGTTGTGATGTCGCCAGTATTTGGATTGAGATaGAAGAGGCTGGTACTTATTGGGGAATTGAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: PLVVMSPVFGLR*KRLVLIGELRK Trigger: CTTCCTCAATTCCCCAATAAGTACCAGCCTCTTCAATCTCAATCCAAATACTGGCGACATCACAACCAATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000523390.2 ENST00000611598.1 |
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| CDS TCA 72 bp | TCGCACTTTTATGAGGGCTATTACAGTTCCAAGGTCTaGATCCTCTGGAATCTGGTTAGAGAAGGACATGAA | + |
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Preference number: 6 (lower is better) Translates to: SHFYEGYYSSKV*ILWNLVREGHE Trigger: TTCATGTCCTTCTCTAACCAGATTCCAGAGGATTCAGACCTTGGAACTGTAATAGCCCTCATAAAAGTGCGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000523390.2 ENST00000611598.1 |
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| CDS CAA 90 bp | ACACTCAACACATATCTACTTGTCTCTTCAAAATCCAATGTGCCATaGGTTGTGATGTCGCCAGTATTTGGATTGAGATTGAAGAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: TLNTYLLVSSKSNVP*VVMSPVFGLRLKRL Trigger: CAGCCTCTTCAATCTCAATCCAAATACTGGCGACATCACAACCAATGGCACATTGGATTTTGAAGAGACAAGTAGATATGTGTTGAGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000523390.2 ENST00000611598.1 |
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