Pregenerated sensors for PCDHGA9 (Homo sapiens)
Ensembl gene IDs: ENSG00000261934Ensembl transcript IDs: ENST00000573521.1, ENST00000573521.2, ENST00000616887.1
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CACTGGGGACCTGGGCAGTGGCCTTCACGGAAGAGAAACGGCACCTaGCAAGGTGAAGGACTGAGGCTTCAGGAGGGCAGGGGCCCTGTT | + |
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Preference number: 1 (lower is better) Translates to: HWGPGQWPSRKRNGT*QGEGLRLQEGRGPV Trigger: AACAGGGCCCCTGCCCTCCTGAAGCCTCAGTCCTTCACCTTGCCAGGTGCCGTTTCTCTTCCGTGAAGGCCACTGCCCAGGTCCCCAGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573521.1 |
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| 3UTR CCA 90 bp | CTGAGGCTTCAGGAGGGCAGGGGCCCTGTTGAAGAAGCCCCATCCTaGGCTGAGACTTTCTGTTCATTTGGTCCCTGCCCTAGCTCCCTG | + |
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Preference number: 1 (lower is better) Translates to: LRLQEGRGPVEEAPS*AETFCSFGPCPSSL Trigger: CAGGGAGCTAGGGCAGGGACCAAATGAACAGAAAGTCTCAGCCCAGGATGGGGCTTCTTCAACAGGGCCCCTGCCCTCCTGAAGCCTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573521.1 |
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| 3UTR CCA 90 bp | TTCCCTTCCTTATCTTACCACCCCATACTGTCTTGGAACATGCAGTaGAGTCTCTTGTTTGAGGAGGAGGTGGGGGAAGTCAAGGCATGC | + |
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Preference number: 1 (lower is better) Translates to: FPSLSYHPILSWNMQ*SLLFEEEVGEVKAC Trigger: GCATGCCTTGACTTCCCCCACCTCCTCCTCAAACAAGAGACTCCACTGCATGTTCCAAGACAGTATGGGGTGGTAAGATAAGGAAGGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000573521.1 |
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| 3UTR CCA 90 bp | ACATCCACACACTTCCCTTCCTTATCTTACCACCCCATACTGTCTTaGAACATGCAGTGGAGTCTCTTGTTTGAGGAGGAGGTGGGGGAA | + |
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Preference number: 1 (lower is better) Translates to: TSTHFPSLSYHPILS*NMQWSLLFEEEVGE Trigger: TTCCCCCACCTCCTCCTCAAACAAGAGACTCCACTGCATGTTCCAAGACAGTATGGGGTGGTAAGATAAGGAAGGGAAGTGTGTGGATGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000573521.1 |
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| 3UTR CCA 90 bp | TACTGTCTTGGAACATGCAGTGGAGTCTCTTGTTTGAGGAGGAGGTaGGGGAAGTCAAGGCATGCAGTGGAAACGTCAAACAATGAAAAA | + |
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Preference number: 1 (lower is better) Translates to: YCLGTCSGVSCLRRR*GKSRHAVETSNNEK Trigger: TTTTTCATTGTTTGACGTTTCCACTGCATGCCTTGACTTCCCCCACCTCCTCCTCAAACAAGAGACTCCACTGCATGTTCCAAGACAGTA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000573521.1 |
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| 3UTR CCA 90 bp | ATATTAGAGTATAAAACTTGCGTGAGACACAGGAAGAGGGTGGGGTaGGAGCTACGTGACTATGCGAAGAGAAGCGCTTATAGGAGAAGT | + |
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Preference number: 1 (lower is better) Translates to: ILEYKTCVRHRKRVG*ELRDYAKRSAYRRS Trigger: ACTTCTCCTATAAGCGCTTCTCTTCGCATAGTCACGTAGCTCCCACCCCACCCTCTTCCTGTGTCTCACGCAAGTTTTATACTCTAATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573521.1 |
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| 3UTR CAA 90 bp | TTATCTTACCACCCCATACTGTCTTGGAACATGCAGTGGAGTCTCTaGTTTGAGGAGGAGGTGGGGGAAGTCAAGGCATGCAGTGGAAAC | + |
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Preference number: 2 (lower is better) Translates to: LSYHPILSWNMQWSL*FEEEVGEVKACSGN Trigger: GTTTCCACTGCATGCCTTGACTTCCCCCACCTCCTCCTCAAACAAGAGACTCCACTGCATGTTCCAAGACAGTATGGGGTGGTAAGATAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000573521.1 |
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| 3UTR CAA 90 bp | ATACAGAGCCTCCTCCAAGGCCTTGATAACTTGATGTGTCAAGCTTaGTCCATGCCCCCACCATCCACATCCACACACTTCCCTTCCTTA | + |
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Preference number: 2 (lower is better) Translates to: IQSLLQGLDNLMCQA*SMPPPSTSTHFPSL Trigger: TAAGGAAGGGAAGTGTGTGGATGTGGATGGTGGGGGCATGGACAAAGCTTGACACATCAAGTTATCAAGGCCTTGGAGGAGGCTCTGTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000573521.1 |
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| CDS TCA 90 bp | GTGTCATCGCCATTTTGGGAGCCGCTGGTGCCGGGTCTCTGGGCCTaGGAGAAACGCCAGTCCGTGTTGGGCGGGGCTTGCGGAACCAAA | + |
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Preference number: 5 (lower is better) Translates to: VSSPFWEPLVPGLWA*EKRQSVLGGACGTK Trigger: TTTGGTTCCGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573521.2 |
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| CDS GCA 90 bp | GCCAACCCATCACTGGTAGCCCGCAGCAGATGCGAGGAGTGCCAGTaGCTCAGCCTGAGGGCCAGCAGCGTGATAACGAAGGTGAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: ANPSLVARSRCEECQ*LSLRASSVITKVRK Trigger: CTTCCTCACCTTCGTTATCACGCTGCTGGCCCTCAGGCTGAGGCACTGGCACTCCTCGCATCTGCTGCGGGCTACCAGTGATGGGTTGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000573521.2 ENST00000616887.1 |
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| CDS GCA 90 bp | ACACCAGCCAACCCATCACTGGTAGCCCGCAGCAGATGCGAGGAGTaGCAGTGCCTCAGCCTGAGGGCCAGCAGCGTGATAACGAAGGTG | + |
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Preference number: 5 (lower is better) Translates to: TPANPSLVARSRCEE*QCLSLRASSVITKV Trigger: CACCTTCGTTATCACGCTGCTGGCCCTCAGGCTGAGGCACTGGCACTCCTCGCATCTGCTGCGGGCTACCAGTGATGGGTTGGCTGGTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000573521.2 ENST00000616887.1 |
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| CDS GCA 90 bp | CTGCCATTGCTGCCTCGCTTTGGAATTTTCTCAAAAGGATCTCTGTaGGCGCTGCTTCATCAGGTTCTTTCTTCCACCCTGCAAAGTATG | + |
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Preference number: 5 (lower is better) Translates to: LPLLPRFGIFSKGSL*ALLHQVLSSTLQSM Trigger: CATACTTTGCAGGGTGGAAGAAAGAACCTGATGAAGCAGCGCGCACAGAGATCCTTTTGAGAAAATTCCAAAGCGAGGCAGCAATGGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573521.2 |
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| CDS GCA 72 bp | TCACTGGTAGCCCGCAGCAGATGCGAGGAGTGCCAGTaGCTCAGCCTGAGGGCCAGCAGCGTGATAACGAAG | + |
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Preference number: 6 (lower is better) Translates to: SLVARSRCEECQ*LSLRASSVITK Trigger: CTTCGTTATCACGCTGCTGGCCCTCAGGCTGAGGCACTGGCACTCCTCGCATCTGCTGCGGGCTACCAGTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000573521.2 ENST00000616887.1 |
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| CDS GCA 72 bp | AACCCATCACTGGTAGCCCGCAGCAGATGCGAGGAGTaGCAGTGCCTCAGCCTGAGGGCCAGCAGCGTGATA | + |
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Preference number: 6 (lower is better) Translates to: NPSLVARSRCEE*QCLSLRASSVI Trigger: TATCACGCTGCTGGCCCTCAGGCTGAGGCACTGGCACTCCTCGCATCTGCTGCGGGCTACCAGTGATGGGTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000573521.2 ENST00000616887.1 |
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| CDS CCA 72 bp | CGGGTCTCTGGGCCTGAGAGAAACGCCAGTCCGTGTTaGGCGGGGCTTGCGGAACCAAAGGGGTGTCTTCTA | + |
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Preference number: 6 (lower is better) Translates to: RVSGPERNASPC*AGLAEPKGCLL Trigger: TAGAAGACACCCCTTTGGTTCCGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573521.2 |
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| CDS CCA 72 bp | AGGAGCGAGCATAGCAGGACTAATCTTCCGCGGAGCTaGCATTTGGTTGGAGCTGCCATTGCTGCCTCGCTT | + |
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Preference number: 6 (lower is better) Translates to: RSEHSRTNLPRS*HLVGAAIAASL Trigger: AAGCGAGGCAGCAATGGCAGCTCCAACCAAATGCCAGCTCCGCGGAAGATTAGTCCTGCTATGCTCGCTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000573521.2 ENST00000616887.1 |
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| CDS CAA 90 bp | TCCGCGGAGCTGGCATTTGGTTGGAGCTGCCATTGCTGCCTCGCTTaGGAATTTTCTCAAAAGGATCTCTGTGCGCGCTGCTTCATCAGG | + |
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Preference number: 6 (lower is better) Translates to: SAELAFGWSCHCCLA*EFSQKDLCARCFIR Trigger: CCTGATGAAGCAGCGCGCACAGAGATCCTTTTGAGAAAATTCCAAAGCGAGGCAGCAATGGCAGCTCCAACCAAATGCCAGCTCCGCGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573521.2 |
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| CDS CAA 90 bp | GCAGGACTAATCTTCCGCGGAGCTGGCATTTGGTTGGAGCTGCCATaGCTGCCTCGCTTTGGAATTTTCTCAAAAGGATCTCTGTGCGCG | + |
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Preference number: 6 (lower is better) Translates to: AGLIFRGAGIWLELP*LPRFGIFSKGSLCA Trigger: CGCGCACAGAGATCCTTTTGAGAAAATTCCAAAGCGAGGCAGCAATGGCAGCTCCAACCAAATGCCAGCTCCGCGGAAGATTAGTCCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573521.2 |
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| CDS CAA 72 bp | CTGGCATTTGGTTGGAGCTGCCATTGCTGCCTCGCTTaGGAATTTTCTCAAAAGGATCTCTGTGCGCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: LAFGWSCHCCLA*EFSQKDLCARC Trigger: GCAGCGCGCACAGAGATCCTTTTGAGAAAATTCCAAAGCGAGGCAGCAATGGCAGCTCCAACCAAATGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573521.2 |
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| CDS CAA 90 bp | GGAGCGAGCATAGCAGGACTAATCTTCCGCGGAGCTGGCATTTGGTaGGAGCTGCCATTGCTGCCTCGCTTTGGAATTTTCTCAAAAGGA | + |
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Preference number: 6 (lower is better) Translates to: GASIAGLIFRGAGIW*ELPLLPRFGIFSKG Trigger: TCCTTTTGAGAAAATTCCAAAGCGAGGCAGCAATGGCAGCTCCAACCAAATGCCAGCTCCGCGGAAGATTAGTCCTGCTATGCTCGCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573521.2 |
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| CDS GCA 72 bp | TCCGCGGAGCTGGCATTTGGTTGGAGCTGCCATTGCTaGCTCGCTTTGGAATTTTCTCAAAAGGATCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: SAELAFGWSCHC*LALEFSQKDLC Trigger: ACAGAGATCCTTTTGAGAAAATTCCAAAGCGAGGCAGCAATGGCAGCTCCAACCAAATGCCAGCTCCGCGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573521.2 |
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| CDS GCA 72 bp | TCTTCCGCGGAGCTGGCATTTGGTTGGAGCTGCCATTaGTGCCTCGCTTTGGAATTTTCTCAAAAGGATCTC | + |
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Preference number: 6 (lower is better) Translates to: SSAELAFGWSCH*CLALEFSQKDL Trigger: GAGATCCTTTTGAGAAAATTCCAAAGCGAGGCAGCAATGGCAGCTCCAACCAAATGCCAGCTCCGCGGAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573521.2 |
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| CDS CAA 72 bp | ATAGCAGGACTAATCTTCCGCGGAGCTGGCATTTGGTaGGAGCTGCCATTGCTGCCTCGCTTTGGAATTTTC | + |
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Preference number: 6 (lower is better) Translates to: IAGLIFRGAGIW*ELPLLPRFGIF Trigger: GAAAATTCCAAAGCGAGGCAGCAATGGCAGCTCCAACCAAATGCCAGCTCCGCGGAAGATTAGTCCTGCTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000573521.2 |
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| CDS CAA 72 bp | ATCTTCCGCGGAGCTGGCATTTGGTTGGAGCTGCCATaGCTGCCTCGCTTTGGAATTTTCTCAAAAGGATCT | + |
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Preference number: 6 (lower is better) Translates to: IFRGAGIWLELP*LPRFGIFSKGS Trigger: AGATCCTTTTGAGAAAATTCCAAAGCGAGGCAGCAATGGCAGCTCCAACCAAATGCCAGCTCCGCGGAAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573521.2 |
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| CDS GCA 72 bp | GCTTTGGAATTTTCTCAAAAGGATCTCTGTGCGCGCTaGTTCATCAGGTTCTTTCTTCCACCCTGCAAAGTA | + |
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Preference number: 6 (lower is better) Translates to: ALEFSQKDLCAR*FIRFFLPPCKV Trigger: TACTTTGCAGGGTGGAAGAAAGAACCTGATGAAGCAGCGCGCACAGAGATCCTTTTGAGAAAATTCCAAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573521.2 |
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| CDS CCA 72 bp | AAGAATTACTGTTCCCTGAGGTGCGTCTTCTCTCACTaGGCTAAACAGAGATGTAATGGTCACTTCAGGTCT | + |
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Preference number: 6 (lower is better) Translates to: KNYCSLRCVFSH*AKQRCNGHFRS Trigger: AGACCTGAAGTGACCATTACATCTCTGTTTAGCCCAGTGAGAGAAGACGCACCTCAGGGAACAGTAATTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000573521.2 ENST00000616887.1 |
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