RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCDHGA8 (Homo sapiens)

Ensembl gene IDs: ENSG00000253767

Ensembl transcript IDs: ENST00000398604.3, ENST00000610569.1

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp TCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGGCATGGAGCCCAGGTaGCCACTGACTCACATACTT +
Preference number: 2 (lower is better)
Translates to: STFSPLHINAQPKQLIGIGMEPR*PLTHIL
Trigger: AAGTATGTGAGTCAGTGGTCACCTGGGCTCCATGCC...AATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
3UTR-3UTR CCA 90 bp TTAATATCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTAGTTTTGAAGGGCACTaGTACAGAAACAGGGCTCAG +
Preference number: 2 (lower is better)
Translates to: LISTFSPLHINAQPKQLISFEGH*YRNRAQ
Trigger: CTGAGCCCTGTTTCTGTACCAGTGCCCTTCAAAACT...AATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
3UTR-3UTR TCA 90 bp TCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGAAGTATTAAAGTTTTaGAGGGCACTGGTACAGAAA +
Preference number: 2 (lower is better)
Translates to: STFSPLHINAQPKQLIGIEVLKF*RALVQK
Trigger: TTTCTGTACCAGTGCCCTTCAAAACTTTAATACTTC...AATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
3UTR-3UTR CCA 90 bp TTAATATCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGCAAAATTACCAGTATaGACGGGTAGCTACTTCTTA +
Preference number: 2 (lower is better)
Translates to: LISTFSPLHINAQPKQLIAKLPV*TGSYFL
Trigger: TAAGAAGTAGCTACCCGTCCATACTGGTAATTTTGC...AATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
3UTR-3UTR CAA 90 bp TTAATATCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGAAGGCTTAAAATGGTaGAACAATCTTTTCCAAGTC +
Preference number: 3 (lower is better)
Translates to: LISTFSPLHINAQPKQLIEGLKW*NNLFQV
Trigger: GACTTGGAAAAGATTGTTCAACCATTTTAAGCCTTC...AATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CCA 90 bp TTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGTATTGTCAGCTCGCCGCGTCTaGGGCGACTCTGTGGAGCGG +
Preference number: 4 (lower is better)
Translates to: FSPLHINAQPKQLIGIVLSARRV*GDSVER
Trigger: CCGCTCCACAGAGTCGCCCCAGACGCGGCGAGCTGA...CAATACAATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR TCA 90 bp CCTGAAACATTGGTTCTTAATATCAACATTCTCACCACTTCACATCAATGCACAGCCAGCGCCTCAGCCTaGGCCCCAGAAGCACAGCGA +
Preference number: 4 (lower is better)
Translates to: PETLVLNINILTTSHQCTASASA*APEAQR
Trigger: TCGCTGTGCTTCTGGGGCTCAGGCTGAGGCGCTGGC...TGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAAGAACCAATGTTTCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp AGTATTAAAGTTTTGAAGGGCACTGGTACAGAAACAGGGCTCAGAAAAGAGGTTTCCGGAAACCTGGAGTaGCTCCAAACAGGGGTCGGG +
Preference number: 4 (lower is better)
Translates to: SIKVLKGTGTETGLRKEVSGNLE*LQTGVG
Trigger: CCCGACCCCTGTTTGGAGGCACTCCAGGTTTCCGGA...AACCTCTTTTCTGAGCCCTGTTTCTGTACCAGTGCCCTTCAAAACTTTAATACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp TTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGTATTGACGATACGGACTCCGTaGTTCGCCAGCTTCCGGGGG +
Preference number: 4 (lower is better)
Translates to: FSPLHINAQPKQLIGIVLTIRTP*FASFRG
Trigger: CCCCCGGAAGCTGGCGAAGCACGGAGTCCGTATCGT...CAATACAATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp TCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTCTCAAGCGGTCCTCCTaGCCCAGCCTCCCAAAGTGC +
Preference number: 4 (lower is better)
Translates to: STFSPLHINAQPKQLIGILKRSS*PSLPKC
Trigger: GCACTTTGGGAGGCTGGGGCAGGAGGACCGCTTGAG...AATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp AGTATTAAAGTTTTGAAGGGCACTGGTACAGAAACAGGGCTCAGAAAAGAGGTTAGGATCGAGGCTCACTaGAACCTCCACCTCCCGGGT +
Preference number: 4 (lower is better)
Translates to: SIKVLKGTGTETGLRKEVRIEAH*NLHLPG
Trigger: ACCCGGGAGGTGGAGGTTGCAGTGAGCCTCGATCCT...AACCTCTTTTCTGAGCCCTGTTTCTGTACCAGTGCCCTTCAAAACTTTAATACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp AGTATTAAAGTTTTGAAGGGCACTGGTACAGAAACAGGGCTCAGAAAAGAGGTTGCACGCCTACCAATCTaGCACCGGAATCCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: SIKVLKGTGTETGLRKEVARLPI*HRNPGA
Trigger: TGCTCCAGGATTCCGGTGGCAGATTGGTAGGCGTGC...AACCTCTTTTCTGAGCCCTGTTTCTGTACCAGTGCCCTTCAAAACTTTAATACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CCA 90 bp TCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTACCTGGGCATTCTCCTaGCTGTCGGGGTCGTGTGCA +
Preference number: 4 (lower is better)
Translates to: STFSPLHINAQPKQLIGITWAFS*LSGSCA
Trigger: TGCACACGACCCCGACAGCCAGGAGAATGCCCAGGT...AATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR TCA 90 bp TTAATATCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTTCCGCGAGTCGGCGGTaGGGGAGACTTCCTGGGAAT +
Preference number: 4 (lower is better)
Translates to: LISTFSPLHINAQPKQLISASRR*GRLPGN
Trigger: ATTCCCAGGAAGTCTCCCTCACCGCCGACTCGCGGA...AATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR TCA 90 bp AGTATTAAAGTTTTGAAGGGCACTGGTACAGAAACAGGGCTCAGAAAAGAGGTTATCTGCGGGTCTTCGTaGGGTGTGAGATCTGAGTGT +
Preference number: 4 (lower is better)
Translates to: SIKVLKGTGTETGLRKEVICGSS*GVRSEC
Trigger: ACACTCAGATCTCACACCTCACGAAGACCCGCAGAT...AACCTCTTTTCTGAGCCCTGTTTCTGTACCAGTGCCCTTCAAAACTTTAATACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CCA 90 bp TTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGTATTGAATCCTCCGGAAACCTaGAGTGCCTCCAAACAGGGG +
Preference number: 4 (lower is better)
Translates to: FSPLHINAQPKQLIGIVLNPPET*SASKQG
Trigger: CCCCTGTTTGGAGGCACTCCAGGTTTCCGGAGGATT...CAATACAATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR TCA 90 bp CTTAATATCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATCCGCAGCTATGGAGATaGCAATCCTCCGGAAACCTG +
Preference number: 4 (lower is better)
Translates to: LNINILTTSHQCTTETANPQLWR*QSSGNL
Trigger: CAGGTTTCCGGAGGATTGTCATCTCCATAGCTGCGG...ATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR TCA 90 bp AGTATTAAAGTTTTGAAGGGCACTGGTACAGAAACAGGGCTCAGAAAAGAGGTTACGTGCAGAGCGATTTaGGTTTCAGTGGACAGAGGT +
Preference number: 4 (lower is better)
Translates to: SIKVLKGTGTETGLRKEVTCRAI*VSVDRG
Trigger: ACCTCTGTCCACTGAAACTCAAATCGCTCTGCACGT...AACCTCTTTTCTGAGCCCTGTTTCTGTACCAGTGCCCTTCAAAACTTTAATACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR TCA 90 bp TTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGTATTGTTGTCTTCCAGTAGGTaGACAGCGGCGCTTACAGTC +
Preference number: 4 (lower is better)
Translates to: FSPLHINAQPKQLIGIVLLSSSR*TAALTV
Trigger: GACTGTAAGCGCCGCTGTTCACCTACTGGAAGACAA...CAATACAATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp TCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGCTGTCGGGGTCGTGTaGAGTCAAGGAAAAGATGGA +
Preference number: 4 (lower is better)
Translates to: STFSPLHINAQPKQLIGIAVGVV*SQGKDG
Trigger: TCCATCTTTTCCTTGACTGCACACGACCCCGACAGC...AATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp TTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGTATTGGCTGTTACCAGTAGCTaGAGGTCTCGGATCTGCTCA +
Preference number: 4 (lower is better)
Translates to: FSPLHINAQPKQLIGIVLAVTSS*RSRICS
Trigger: TGAGCAGATCCGAGACCTGCAGCTACTGGTAACAGC...CAATACAATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp CCTGAAACATTGGTTCTTAATATCAACATTCTCACCACTTCACATCAATGCACACCGAAGGCTTCAGACTaGCCAACTCGGTCAGGACTT +
Preference number: 4 (lower is better)
Translates to: PETLVLNINILTTSHQCTPKASD*PTRSGL
Trigger: AAGTCCTGACCGAGTTGGGCAGTCTGAAGCCTTCGG...TGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAAGAACCAATGTTTCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp TTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGTATTGCCACCTAGGCTGGAGTaGAGTGGCATGATCATAGCT +
Preference number: 4 (lower is better)
Translates to: FSPLHINAQPKQLIGIVLPPRLE*SGMIIA
Trigger: AGCTATGATCATGCCACTGCACTCCAGCCTAGGTGG...CAATACAATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CCA 90 bp TCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTTCTGGGGCGACTCTGTaGAGCGGCCATTGTTGTTTT +
Preference number: 4 (lower is better)
Translates to: STFSPLHINAQPKQLIGISGATL*SGHCCF
Trigger: AAAACAACAATGGCCGCTCCACAGAGTCGCCCCAGA...AATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp TTAATATCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGGGTCGGGTTTCGCTaGAGTCCAGCAGTTAGTTTG +
Preference number: 4 (lower is better)
Translates to: LISTFSPLHINAQPKQLIGVGFR*SPAVSL
Trigger: CAAACTAACTGCTGGACTGCAGCGAAACCCGACCCC...AATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp AGTATTAAAGTTTTGAAGGGCACTGGTACAGAAACAGGGCTCAGAAAAGAGGTTAGGCGCATGCCACCATaGCTGGCTAATTTTTGTAGT +
Preference number: 4 (lower is better)
Translates to: SIKVLKGTGTETGLRKEVRRMPP*LANFCS
Trigger: ACTACAAAAATTAGCCAGGCATGGTGGCATGCGCCT...AACCTCTTTTCTGAGCCCTGTTTCTGTACCAGTGCCCTTCAAAACTTTAATACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CCA 90 bp CCTGAAACATTGGTTCTTAATATCAACATTCTCACCACTTCACATCAATGCACACCAGCAGTTAGTTTGTaGCATCTGCGGGTCTTCGTG +
Preference number: 4 (lower is better)
Translates to: PETLVLNINILTTSHQCTPAVSL*HLRVFV
Trigger: CACGAAGACCCGCAGATGCCACAAACTAACTGCTGG...TGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAAGAACCAATGTTTCAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR TCA 90 bp TTAATATCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTAACACCCACAAAATGTaGGGCAGGCACGCCTACCAA +
Preference number: 4 (lower is better)
Translates to: LISTFSPLHINAQPKQLINTHKM*GRHAYQ
Trigger: TTGGTAGGCGTGCCTGCCTCACATTTTGTGGGTGTT...AATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR TCA 90 bp TTAATATCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTCTGGGATTTCAGACATaGGGCACTGTGTCCAGCCAA +
Preference number: 4 (lower is better)
Translates to: LISTFSPLHINAQPKQLILGFQT*GTVSSQ
Trigger: TTGGCTGGACACAGTGCCTCATGTCTGAAATCCCAG...AATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CCA 90 bp TTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGTATTGAGTTTTGAAGGGCACTaGTACAGAAACAGGGCTCAG +
Preference number: 4 (lower is better)
Translates to: FSPLHINAQPKQLIGIVLSFEGH*YRNRAQ
Trigger: CTGAGCCCTGTTTCTGTACCAGTGCCCTTCAAAACT...CAATACAATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR TCA 90 bp TTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGTATTGGTGAGGTGTGAGATCTaGGTGTTTTCGGTTGCATTT +
Preference number: 4 (lower is better)
Translates to: FSPLHINAQPKQLIGIVLVRCEI*VFSVAF
Trigger: AAATGCAACCGAAAACACTCAGATCTCACACCTCAC...CAATACAATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR TCA 90 bp TTAATATCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGTCTTCGTGAGGTGTaGGATCTGAGTGTTTTCGGT +
Preference number: 4 (lower is better)
Translates to: LISTFSPLHINAQPKQLIGLREV*DLSVFG
Trigger: ACCGAAAACACTCAGATCTCACACCTCACGAAGACC...AATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp TCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTCGGCCATTGTTGTTTTaGTGCAGAATCCTCTCAGAA +
Preference number: 4 (lower is better)
Translates to: STFSPLHINAQPKQLIGIRPLLF*CRILSE
Trigger: TTCTGAGAGGATTCTGCAGCAAAACAACAATGGCCG...AATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp CTTAATATCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATGTTGTCGTTAATGTCTaGCACGTGCAGAGCGATTTG +
Preference number: 4 (lower is better)
Translates to: LNINILTTSHQCTTETANVVVNV*HVQSDL
Trigger: CAAATCGCTCTGCACGTGGCAGACATTAACGACAAC...ATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp AGTATTAAAGTTTTGAAGGGCACTGGTACAGAAACAGGGCTCAGAAAAGAGGTTTCTTATTTAGTTTCTTaGCGCAGCTATGGAGATGAC +
Preference number: 4 (lower is better)
Translates to: SIKVLKGTGTETGLRKEVSYLVS*RSYGDD
Trigger: GTCATCTCCATAGCTGCGGCAAGAAACTAAATAAGA...AACCTCTTTTCTGAGCCCTGTTTCTGTACCAGTGCCCTTCAAAACTTTAATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp AGTATTAAAGTTTTGAAGGGCACTGGTACAGAAACAGGGCTCAGAAAAGAGGTTACCACTTCACATCAATaGACAACCGAAACAGCTAAT +
Preference number: 4 (lower is better)
Translates to: SIKVLKGTGTETGLRKEVTTSHQ*TTETAN
Trigger: ATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGT...AACCTCTTTTCTGAGCCCTGTTTCTGTACCAGTGCCCTTCAAAACTTTAATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CCA 90 bp TTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGTATTGTTCTTTCCAGAGTCTTaGTCATGCACACTCAAGAAG +
Preference number: 4 (lower is better)
Translates to: FSPLHINAQPKQLIGIVLFFPES*SCTLKK
Trigger: CTTCTTGAGTGTGCATGACCAAGACTCTGGAAAGAA...CAATACAATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR TCA 90 bp TTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGTATTGGTGTCCAGCCAAGACTaGATAACTTTAATTGAATTG +
Preference number: 4 (lower is better)
Translates to: FSPLHINAQPKQLIGIVLVSSQD*ITLIEL
Trigger: CAATTCAATTAAAGTTATTCAGTCTTGGCTGGACAC...CAATACAATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR GCA 90 bp AGTATTAAAGTTTTGAAGGGCACTGGTACAGAAACAGGGCTCAGAAAAGAGGTTGTCCTAAATAGTTACTaGACTGAGATACAGATTACT +
Preference number: 4 (lower is better)
Translates to: SIKVLKGTGTETGLRKEVVLNSY*TEIQIT
Trigger: AGTAATCTGTATCTCAGTGCAGTAACTATTTAGGAC...AACCTCTTTTCTGAGCCCTGTTTCTGTACCAGTGCCCTTCAAAACTTTAATACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR TCA 90 bp TTAATATCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGAAGTATTAAAGTTTTaGAGGGCACTGGTACAGAAA +
Preference number: 4 (lower is better)
Translates to: LISTFSPLHINAQPKQLIEVLKF*RALVQK
Trigger: TTTCTGTACCAGTGCCCTTCAAAACTTTAATACTTC...AATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CCA 90 bp TTAATATCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTTCTAGATCTTCGACCTaGAATTTTGGGTTATTATCG +
Preference number: 4 (lower is better)
Translates to: LISTFSPLHINAQPKQLISRSST*NFGLLS
Trigger: CGATAATAACCCAAAATTCCAGGTCGAAGATCTAGA...AATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS GCA 90 bp TCCTCCGGAAACCTGGAGTGCCTCCAAACAGGGGTCGGGTTTCGCTaGAGTCCAGCAGTTAGTTTGTGGCATCTGCGGGTCTTCGTGAGG +
Preference number: 5 (lower is better)
Translates to: SSGNLECLQTGVGFR*SPAVSLWHLRVFVR
Trigger: CCTCACGAAGACCCGCAGATGCCACAAACTAACTGCTGGACTGCAGCGAAACCCGACCCCTGTTTGGAGGCACTCCAGGTTTCCGGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1
CDS CCA 90 bp CAGCGCGCACAGCAGGATCAGCTCGCCGCGTCTGGGGCGACTCTGTaGAGCGGCCATTGTTGTTTTGCTGCAGAATCCTCTCAGAATCTT +
Preference number: 5 (lower is better)
Translates to: QRAQQDQLAASGATL*SGHCCFAAESSQNL
Trigger: AAGATTCTGAGAGGATTCTGCAGCAAAACAACAATGGCCGCTCCACAGAGTCGCCCCAGACGCGGCGAGCTGATCCTGCTGTGCGCGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1
CDS CCA 90 bp TTAGTTTCTTGCCGCAGCTATGGAGATGACAATCCTCCGGAAACCTaGAGTGCCTCCAAACAGGGGTCGGGTTTCGCTGCAGTCCAGCAG +
Preference number: 5 (lower is better)
Translates to: LVSCRSYGDDNPPET*SASKQGSGFAAVQQ
Trigger: CTGCTGGACTGCAGCGAAACCCGACCCCTGTTTGGAGGCACTCCAGGTTTCCGGAGGATTGTCATCTCCATAGCTGCGGCAAGAAACTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1
CDS GCA 90 bp GCTCGCCGCGTCTGGGGCGACTCTGTGGAGCGGCCATTGTTGTTTTaGTGCAGAATCCTCTCAGAATCTTCACTGTGCATAAATGGGTCT +
Preference number: 5 (lower is better)
Translates to: ARRVWGDSVERPLLF*CRILSESSLCINGS
Trigger: AGACCCATTTATGCACAGTGAAGATTCTGAGAGGATTCTGCAGCAAAACAACAATGGCCGCTCCACAGAGTCGCCCCAGACGCGGCGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1
CDS TCA 90 bp GTGCATAAATGGGTCTTATTTAGTTTCTTGCCGCAGCTATGGAGATaGCAATCCTCCGGAAACCTGGAGTGCCTCCAAACAGGGGTCGGG +
Preference number: 5 (lower is better)
Translates to: VHKWVLFSFLPQLWR*QSSGNLECLQTGVG
Trigger: CCCGACCCCTGTTTGGAGGCACTCCAGGTTTCCGGAGGATTGTCATCTCCATAGCTGCGGCAAGAAACTAAATAAGACCCATTTATGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1
CDS TCA 90 bp TTCGCTGCAGTCCAGCAGTTAGTTTGTGGCATCTGCGGGTCTTCGTaGGGTGTGAGATCTGAGTGTTTTCGGTTGCATTTGTCTTCCAGT +
Preference number: 5 (lower is better)
Translates to: FAAVQQLVCGICGSS*GVRSECFRLHLSSS
Trigger: ACTGGAAGACAAATGCAACCGAAAACACTCAGATCTCACACCTCACGAAGACCCGCAGATGCCACAAACTAACTGCTGGACTGCAGCGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS GCA 90 bp CTCTCAGAATCTTCACTGTGCATAAATGGGTCTTATTTAGTTTCTTaGCGCAGCTATGGAGATGACAATCCTCCGGAAACCTGGAGTGCC +
Preference number: 5 (lower is better)
Translates to: LSESSLCINGSYLVS*RSYGDDNPPETWSA
Trigger: GGCACTCCAGGTTTCCGGAGGATTGTCATCTCCATAGCTGCGGCAAGAAACTAAATAAGACCCATTTATGCACAGTGAAGATTCTGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1
CDS-3UTR CAA 90 bp AGTATTAAAGTTTTGAAGGGCACTGGTACAGAAACAGGGCTCAGAAAAGAGGTTAGTCCAGCAGTTAGTTaGTGGCATCTGCGGGTCTTC +
Preference number: 5 (lower is better)
Translates to: SIKVLKGTGTETGLRKEVSPAVS*WHLRVF
Trigger: GAAGACCCGCAGATGCCACAAACTAACTGCTGGACT...AACCTCTTTTCTGAGCCCTGTTTCTGTACCAGTGCCCTTCAAAACTTTAATACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CAA 90 bp AGTATTAAAGTTTTGAAGGGCACTGGTACAGAAACAGGGCTCAGAAAAGAGGTTACCGAAATGAGCAATTaGGTCCTCCCCAGAAGTGCC +
Preference number: 5 (lower is better)
Translates to: SIKVLKGTGTETGLRKEVTEMSN*VLPRSA
Trigger: GGCACTTCTGGGGAGGACCAAATTGCTCATTTCGGT...AACCTCTTTTCTGAGCCCTGTTTCTGTACCAGTGCCCTTCAAAACTTTAATACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CAA 90 bp TCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTCACGTGCAGAGCGATTaGAGTTTCAGTGGACAGAGG +
Preference number: 5 (lower is better)
Translates to: STFSPLHINAQPKQLIGIHVQSD*SFSGQR
Trigger: CCTCTGTCCACTGAAACTCAAATCGCTCTGCACGTG...AATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CAA 90 bp TTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGTATTGGGGAAAGTAGGAGGGTaGTCGTTAATGTCTGCCACG +
Preference number: 5 (lower is better)
Translates to: FSPLHINAQPKQLIGIVLGKVGG*SLMSAT
Trigger: CGTGGCAGACATTAACGACAACCCTCCTACTTTCCC...CAATACAATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CAA 90 bp TTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGTATTGGCGGCCATTGTTGTTTaGCTGCAGAATCCTCTCAGA +
Preference number: 5 (lower is better)
Translates to: FSPLHINAQPKQLIGIVLAAIVV*LQNPLR
Trigger: TCTGAGAGGATTCTGCAGCAAAACAACAATGGCCGC...CAATACAATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CAA 90 bp TCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTGGAATTGAGGCTCCTCTCAGGTaGTTCTCTAGGATATACGCT +
Preference number: 5 (lower is better)
Translates to: STFSPLHINAQPKQLIGIEAPLR*FSRIYA
Trigger: AGCGTATATCCTAGAGAACAACCTGAGAGGAGCCTC...AATTCCAATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CAA 90 bp AGTATTAAAGTTTTGAAGGGCACTGGTACAGAAACAGGGCTCAGAAAAGAGGTTTCTGAGTGTTTTCGGTaGCATTTGTCTTCCAGTAGG +
Preference number: 5 (lower is better)
Translates to: SIKVLKGTGTETGLRKEVSECFR*HLSSSR
Trigger: CCTACTGGAAGACAAATGCAACCGAAAACACTCAGA...AACCTCTTTTCTGAGCCCTGTTTCTGTACCAGTGCCCTTCAAAACTTTAATACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CAA 90 bp TTAATATCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTTCTGTGGAGCGGCCATaGTTGTTTTGCTGCAGAATC +
Preference number: 5 (lower is better)
Translates to: LISTFSPLHINAQPKQLISVERP*LFCCRI
Trigger: GATTCTGCAGCAAAACAACAATGGCCGCTCCACAGA...AATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CAA 90 bp AGTATTAAAGTTTTGAAGGGCACTGGTACAGAAACAGGGCTCAGAAAAGAGGTTGAAGGCTTAAAATGGTaGAACAATCTTTTCCAAGTC +
Preference number: 5 (lower is better)
Translates to: SIKVLKGTGTETGLRKEVEGLKW*NNLFQV
Trigger: GACTTGGAAAAGATTGTTCAACCATTTTAAGCCTTC...AACCTCTTTTCTGAGCCCTGTTTCTGTACCAGTGCCCTTCAAAACTTTAATACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS-3UTR CAA 90 bp TTAATATCAACATTCTCACCACTTCACATCAATGCACAACCGAAACAGCTAATTATTCTTTCCAGAGTCTaGGTCATGCACACTCAAGAA +
Preference number: 5 (lower is better)
Translates to: LISTFSPLHINAQPKQLIILSRV*VMHTQE
Trigger: TTCTTGAGTGTGCATGACCAAGACTCTGGAAAGAAT...AATTAGCTGTTTCGGTTGTGCATTGATGTGAAGTGGTGAGAATGTTGATATTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS CCA 72 bp CCAGCAGCGCGCACAGCAGGATCAGCTCGCCGCGTCTaGGGCGACTCTGTGGAGCGGCCATTGTTGTTTTGC +
Preference number: 6 (lower is better)
Translates to: PAARTAGSARRV*GDSVERPLLFC
Trigger: GCAAAACAACAATGGCCGCTCCACAGAGTCGCCCCAGACGCGGCGAGCTGATCCTGCTGTGCGCGCTGCTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1
CDS CCA 72 bp CAGCAGGATCAGCTCGCCGCGTCTGGGGCGACTCTGTaGAGCGGCCATTGTTGTTTTGCTGCAGAATCCTCT +
Preference number: 6 (lower is better)
Translates to: QQDQLAASGATL*SGHCCFAAESS
Trigger: AGAGGATTCTGCAGCAAAACAACAATGGCCGCTCCACAGAGTCGCCCCAGACGCGGCGAGCTGATCCTGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1
CDS CCA 72 bp CGGGTCTCTGGGCCTGAGAGAAACGCCAGTCCGTGTTaGGCGGGGCTTGCTGACCATGATCAGCTTCATTCT +
Preference number: 6 (lower is better)
Translates to: RVSGPERNASPC*AGLADHDQLHS
Trigger: AGAATGAAGCTGATCATGGTCAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000398604.3
CDS GCA 72 bp AACCTGGAGTGCCTCCAAACAGGGGTCGGGTTTCGCTaGAGTCCAGCAGTTAGTTTGTGGCATCTGCGGGTC +
Preference number: 6 (lower is better)
Translates to: NLECLQTGVGFR*SPAVSLWHLRV
Trigger: GACCCGCAGATGCCACAAACTAACTGCTGGACTGCAGCGAAACCCGACCCCTGTTTGGAGGCACTCCAGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1
CDS CCA 72 bp TGCCGCAGCTATGGAGATGACAATCCTCCGGAAACCTaGAGTGCCTCCAAACAGGGGTCGGGTTTCGCTGCA +
Preference number: 6 (lower is better)
Translates to: CRSYGDDNPPET*SASKQGSGFAA
Trigger: TGCAGCGAAACCCGACCCCTGTTTGGAGGCACTCCAGGTTTCCGGAGGATTGTCATCTCCATAGCTGCGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1
CDS CAA 72 bp ACAGGGGTCGGGTTTCGCTGCAGTCCAGCAGTTAGTTaGTGGCATCTGCGGGTCTTCGTGAGGTGTGAGATC +
Preference number: 6 (lower is better)
Translates to: TGVGFRCSPAVS*WHLRVFVRCEI
Trigger: GATCTCACACCTCACGAAGACCCGCAGATGCCACAAACTAACTGCTGGACTGCAGCGAAACCCGACCCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS CAA 90 bp GCAGGATCAGCTCGCCGCGTCTGGGGCGACTCTGTGGAGCGGCCATaGTTGTTTTGCTGCAGAATCCTCTCAGAATCTTCACTGTGCATA +
Preference number: 6 (lower is better)
Translates to: AGSARRVWGDSVERP*LFCCRILSESSLCI
Trigger: TATGCACAGTGAAGATTCTGAGAGGATTCTGCAGCAAAACAACAATGGCCGCTCCACAGAGTCGCCCCAGACGCGGCGAGCTGATCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1
CDS CAA 90 bp AGCTCGCCGCGTCTGGGGCGACTCTGTGGAGCGGCCATTGTTGTTTaGCTGCAGAATCCTCTCAGAATCTTCACTGTGCATAAATGGGTC +
Preference number: 6 (lower is better)
Translates to: SSPRLGRLCGAAIVV*LQNPLRIFTVHKWV
Trigger: GACCCATTTATGCACAGTGAAGATTCTGAGAGGATTCTGCAGCAAAACAACAATGGCCGCTCCACAGAGTCGCCCCAGACGCGGCGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1
CDS CAA 72 bp CGTCTGGGGCGACTCTGTGGAGCGGCCATTGTTGTTTaGCTGCAGAATCCTCTCAGAATCTTCACTGTGCAT +
Preference number: 6 (lower is better)
Translates to: RLGRLCGAAIVV*LQNPLRIFTVH
Trigger: ATGCACAGTGAAGATTCTGAGAGGATTCTGCAGCAAAACAACAATGGCCGCTCCACAGAGTCGCCCCAGACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1
CDS GCA 72 bp GTCTGGGGCGACTCTGTGGAGCGGCCATTGTTGTTTTaGTGCAGAATCCTCTCAGAATCTTCACTGTGCATA +
Preference number: 6 (lower is better)
Translates to: VWGDSVERPLLF*CRILSESSLCI
Trigger: TATGCACAGTGAAGATTCTGAGAGGATTCTGCAGCAAAACAACAATGGCCGCTCCACAGAGTCGCCCCAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1
CDS TCA 72 bp GTCCAGCAGTTAGTTTGTGGCATCTGCGGGTCTTCGTaGGGTGTGAGATCTGAGTGTTTTCGGTTGCATTTG +
Preference number: 6 (lower is better)
Translates to: VQQLVCGICGSS*GVRSECFRLHL
Trigger: CAAATGCAACCGAAAACACTCAGATCTCACACCTCACGAAGACCCGCAGATGCCACAAACTAACTGCTGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610569.1
CDS TCA 72 bp TGGGTCTTATTTAGTTTCTTGCCGCAGCTATGGAGATaGCAATCCTCCGGAAACCTGGAGTGCCTCCAAACA +
Preference number: 6 (lower is better)
Translates to: WVLFSFLPQLWR*QSSGNLECLQT
Trigger: TGTTTGGAGGCACTCCAGGTTTCCGGAGGATTGTCATCTCCATAGCTGCGGCAAGAAACTAAATAAGACCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1
CDS GCA 72 bp TCTTCACTGTGCATAAATGGGTCTTATTTAGTTTCTTaGCGCAGCTATGGAGATGACAATCCTCCGGAAACC +
Preference number: 6 (lower is better)
Translates to: SSLCINGSYLVS*RSYGDDNPPET
Trigger: GGTTTCCGGAGGATTGTCATCTCCATAGCTGCGGCAAGAAACTAAATAAGACCCATTTATGCACAGTGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000398604.3
ENST00000610569.1