Pregenerated sensors for PCDHGA7 (Homo sapiens)
Ensembl gene IDs: ENSG00000253537Ensembl transcript IDs: ENST00000518325.2, ENST00000617050.1
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATTTAAAGTGTCACCACTaGAGGAAACTGGTAAACTCA | + |
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Preference number: 2 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHLKCHH*RKLVNS Trigger: TGAGTTTACCAGTTTCCTTCAGTGGTGACACTTTAA...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| 3UTR-3UTR CAA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATAGGTTGGAACATAGATaGGAAAGTAGGTGGAAATTA | + |
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Preference number: 3 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHRLEHR*ESRWKL Trigger: TAATTTCCACCTACTTTCCAATCTATGTTCCAACCT...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATAGGATGTGGGCGGTGCTaGATCGGGGCGGGTCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDIGCGRC*IGAGRR Trigger: GCGGCGACCCGCCCCGATCCAGCACCGCCCACATCC...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR TCA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATTCCCCGCCCCTCGGCTaGGCCGCCATAGTCGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHSPPLG*AAIVVL Trigger: CAGGACGACTATGGCGGCTCAGCCGAGGGGCGGGGA...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR GCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATACCTGGATGTGGGCGGTaGTGGATCGGGGCGGGTCGC | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDIPGCGR*WIGAGR Trigger: GCGACCCGCCCCGATCCAGCACCGCCCACATCCAGG...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR TCA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATAGACACCGCGCACTCTaGGCGCAGATCTCTTCCCGG | + |
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Preference number: 4 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHRHRAL*AQISSR Trigger: CCGGGAAGAGATCTGCGCTCAGAGTGCGCGGTGTCT...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR TCA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATGAGTGTGACGGTGGCTaGCAGAGGAGGCTGACCGTG | + |
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Preference number: 4 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHECDGG*QRRLTV Trigger: CACGGTCAGCCTCCTCTGTCAGCCACCGTCACACTC...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATAACTGTCACCTGGATGTaGGCGGTGCTGGATCGGGGC | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDITVTWM*AVLDRG Trigger: GCCCCGATCCAGCACCGCCCACATCCAGGTGACAGT...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR GCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATATCGTCCTGCTTCTCTTaGTTAGGCGCCGATCTCGGG | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDISSCFS*LGADLG Trigger: CCCGAGATCGGCGCCTAAGCAAGAGAAGCAGGACGA...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR GCA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATGTAGAGAATACGTCCTaGCCAGGCTTCCCAGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHVENTS*PGFPGG Trigger: ACCCCCTGGGAAGCCTGGGCAGGACGTATTCTCTAC...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CCA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATGGGTCCCCAGGAGGATaGAGAGCAGGAAGAATCCTC | + |
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Preference number: 4 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHGSPGG*RAGRIL Trigger: GAGGATTCTTCCTGCTCTCCATCCTCCTGGGGACCC...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATATCCACCACTGTCACCTaGATGTGGGCGGTGCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDISTTVT*MWAVLD Trigger: ATCCAGCACCGCCCACATCCAGGTGACAGTGGTGGA...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR GCA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATGGAAGTGCTTCAGAATaGGGGTGTATCCGGGTGGAC | + |
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Preference number: 4 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHGSASE*GCIRVD Trigger: GTCCACCCGGATACACCCGCATTCTGAAGCACTTCC...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR TCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATAAGGGCTGGGCTCACCTaGATACTTGGCAGGTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDIRAGLT*ILGRFS Trigger: AGAAAACCTGCCAAGTATTCAGGTGAGCCCAGCCCT...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR GCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATAGCCGATCTCGGGAAGTaGTTCAGAATGCGGGTGTAT | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDIADLGK*FRMRVY Trigger: ATACACCCGCATTCTGAAGCACTTCCCGAGATCGGC...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR GCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATATCATCGTCTCCACTTTaGACAGCCAGGGAGAAGTGG | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDISSSPL*TAREKW Trigger: CCACTTCTCCCTGGCTGTGCAAAGTGGAGACGATGA...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CCA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATCAGTCTTGTACCCACTaGCACATTCTCGGGGACAGT | + |
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Preference number: 4 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHQSCTH*HILGDS Trigger: ACTGTCCCCGAGAATGTGCCAGTGGGTACAAGACTG...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATAAAATGGAGGCCCCTCTaGGGTTGTTCTCAGCGATGT | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDIKWRPL*GCSQRC Trigger: ACATCGCTGAGAACAACCCCAGAGGGGCCTCCATTT...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR TCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATAACAGTTACTTGGTACTaGGGCAGAGAGAAGACAGGC | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDITVTWY*GREKTG Trigger: GCCTGTCTTCTCTCTGCCTCAGTACCAAGTAACTGT...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR TCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATATGTCTGCCACCTGCATaGATATGTGAGTTTCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDICLPPA*ICEFPW Trigger: CCAGGGAAACTCACATATTCATGCAGGTGGCAGACA...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR TCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATATTAGGACCACCAAGCTaGGGTACATGGAGGCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDILGPPS*GTWRQN Trigger: ATTCTGCCTCCATGTACCTCAGCTTGGTGGTCCTAA...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR TCA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATACCTGCATGAATATGTaGGTTTCCCTGGACAAGGGA | + |
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Preference number: 4 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHTCMNM*VSLDKG Trigger: TCCCTTGTCCAGGGAAACTCACATATTCATGCAGGT...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR GCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATAGGTTTTCTGGAATGGTaGAGGTCACCTCACCATTCT | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDIGFLEW*RSPHHS Trigger: AGAATGGTGAGGTGACCTGCACCATTCCAGAAAACC...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATAGAGTTTAGTGCAGCCTaGAAGAGGGCTTATCGCAAT | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDIEFSAA*KRAYRN Trigger: ATTGCGATAAGCCCTCTTCCAGGCTGCACTAAACTC...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATAGTAGGTTTTCTGGAATaGTGCAGGTCACCTCACCAT | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDIVGFLE*CRSPHH Trigger: ATGGTGAGGTGACCTGCACCATTCCAGAAAACCTAC...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CCA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATTTATCCTCACTGTCGTaGTCCTGTGCAGTCACTAAG | + |
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Preference number: 4 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHLSSLS*SCAVTK Trigger: CTTAGTGACTGCACAGGACCACGACAGTGAGGATAA...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR GCA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATGTTATCGTTGGTGTCTaGCACCTGCATGAATATGTG | + |
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Preference number: 4 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHVIVGV*HLHEYV Trigger: CACATATTCATGCAGGTGGCAGACACCAACGATAAC...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| 3UTR CAA 72 bp | TGGTTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTaGATGTCTGTCTTTGATATAGATCTTAGTGAAGTG | + |
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Preference number: 4 (lower is better) Translates to: WFCPMAFSVALD*MSVFDIDLSEV Trigger: CACTTCACTAAGATCTATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAACCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATAGCTCACCTGAATACTTaGCAGGTTTTCTTTACATTC | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDIAHLNT*QVFFTF Trigger: GAATGTAAAGAAAACCTGCCAAGTATTCAGGTGAGC...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR TCA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATGTAAGCGAGTTCAGATaGAACATCTTTGGAAGTTTA | + |
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Preference number: 4 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHVSEFR*NIFGSL Trigger: TAAACTTCCAAAGATGTTTCATCTGAACTCGCTTAC...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR TCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATAGATCTTAGTGAAGTGTaGTACACACACATTTCATTC | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDIDLSEV*YTHISF Trigger: GAATGAAATGTGTGTGTATCACACTTCACTAAGATC...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR GCA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATTTCCTGCTAACCTTGTaGAATATGAAAGACTCGATT | + |
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Preference number: 4 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHFLLTL*NMKDSI Trigger: AATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAA...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CCA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATATTCCGTCAAGAATCTTaGAACGTTGTCATTAATATC | + |
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Preference number: 4 (lower is better) Translates to: FCPMAFSVALDLMSVFDIFRQES*NVVINI Trigger: GATATTAATGACAACGTTCCAAGATTCTTGACGGAA...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CAA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATAGTCGTCCTGCTTCTCTaGCTTAGGCGCCGATCTCGG | + |
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Preference number: 5 (lower is better) Translates to: FCPMAFSVALDLMSVFDIVVLLL*LRRRSR Trigger: CCGAGATCGGCGCCTAAGCAAGAGAAGCAGGACGAC...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CAA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATACCCACAAAGGACCCTTaGTCCGTCTCCTCCGACACG | + |
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Preference number: 5 (lower is better) Translates to: FCPMAFSVALDLMSVFDIPTKDP*SVSSDT Trigger: CGTGTCGGAGGAGACGGACAAAGGGTCCTTTGTGGG...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CAA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATTATGTCACTTCCCCATaGACTCCCTCGTCCAGGTCG | + |
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Preference number: 5 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHYVTSP*TPSSRS Trigger: CGACCTGGACGAGGGAGTCAATGGGGAAGTGACATA...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CAA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATACAGCAGGATAGAGGCTaGAGTTTAGTGCAGCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: FCPMAFSVALDLMSVFDIQQDRG*SLVQPG Trigger: TCCAGGCTGCACTAAACTCAAGCCTCTATCCTGCTG...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CAA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATACTCGGGGACAGTTACTaGGTACTGAGGCAGAGAGAA | + |
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Preference number: 5 (lower is better) Translates to: FCPMAFSVALDLMSVFDILGDSY*VLRQRE Trigger: TTCTCTCTGCCTCAGTACCAAGTAACTGTCCCCGAG...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS TCA 90 bp | CACCATTCTTTCCAGAATCTCTGTCTTGTAGGTAGAAAAGAGCAATaGCTGTCCCAAGAGGTGTGTCTTCAGGGATTGAGCTACTTAAAG | + |
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Preference number: 5 (lower is better) Translates to: HHSFQNLCLVGRKEQ*LSQEVCLQGLSYLK Trigger: CTTTAAGTAGCTCAATCCCTGAAGACACACCTCTTGGGACAGTCATTGCTCTTTTCTACCTACAAGACAGAGATTCTGGAAAGAATGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000518325.2 ENST00000617050.1 |
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| CDS-3UTR CAA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATAACTACCAGGACCATCTaGAGCCTGAACCTCCATTTC | + |
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Preference number: 5 (lower is better) Translates to: FCPMAFSVALDLMSVFDITTRTI*SLNLHF Trigger: GAAATGGAGGTTCAGGCTCAAGATGGTCCTGGTAGT...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CAA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATTCAGTACTTTTGCCTTaGTCAGACTACCAGGACCAT | + |
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Preference number: 5 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHSVLLP*SDYQDH Trigger: ATGGTCCTGGTAGTCTGACAAAGGCAAAAGTACTGA...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CAA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATAGTGTGTCTTCAGGGATaGAGCTACTTAAAGACGTCA | + |
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Preference number: 5 (lower is better) Translates to: FCPMAFSVALDLMSVFDIVCLQG*SYLKTS Trigger: TGACGTCTTTAAGTAGCTCAATCCCTGAAGACACAC...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CAA 90 bp | CTGAGGTGTGTTTTATTCCTGCTAACCTTGTGCAATATGAAAGACTCGATTCATGGCTCACCTGAATACTaGGCAGGTTTTCTTTACATT | + |
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Preference number: 5 (lower is better) Translates to: LRCVLFLLTLCNMKDSIHGSPEY*AGFLYI Trigger: AATGTAAAGAAAACCTGCCAAGTATTCAGGTGAGCC...ATGAATCGAGTCTTTCATATTGCACAAGGTTAGCAGGAATAAAACACACCTCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS-3UTR CAA 90 bp | TTTTGTCCGATGGCCTTTAGTGTGGCATTAGACTTGATGTCTGTCTTTGATATAAGGTTGGAACATAGATaGGAAAGTAGGTGGAAATTA | + |
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Preference number: 5 (lower is better) Translates to: FCPMAFSVALDLMSVFDIRLEHR*ESRWKL Trigger: TAATTTCCACCTACTTTCCAATCTATGTTCCAACCT...TATATCAAAGACAGACATCAAGTCTAATGCCACACTAAAGGCCATCGGACAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617050.1 |
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| CDS GCA 72 bp | GTCCGTCTCCTCCGACACGGAGTAGAGAATACGTCCTaGCCAGGCTTCCCAGGGGGTCCCCAGGAGGATGGA | + |
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Preference number: 6 (lower is better) Translates to: VRLLRHGVENTS*PGFPGGPQEDG Trigger: TCCATCCTCCTGGGGACCCCCTGGGAAGCCTGGGCAGGACGTATTCTCTACTCCGTGTCGGAGGAGACGGAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000518325.2 ENST00000617050.1 |
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| CDS GCA 72 bp | TCCTGCTTCTCTTGCTTAGGCGCCGATCTCGGGAAGTaGTTCAGAATGCGGGTGTATCCGGGTGGACCCCTC | + |
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Preference number: 6 (lower is better) Translates to: SCFSCLGADLGK*FRMRVYPGGPL Trigger: GAGGGGTCCACCCGGATACACCCGCATTCTGAAGCACTTCCCGAGATCGGCGCCTAAGCAAGAGAAGCAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000518325.2 ENST00000617050.1 |
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| CDS CCA 72 bp | CGGGTCTCTGGGCCTGAGAGAAACGCCAGTCCGTGTTaGGCGGGGCTTGCTGAATACTTGGCAGGTTTTCTT | + |
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Preference number: 6 (lower is better) Translates to: RVSGPERNASPC*AGLAEYLAGFL Trigger: AAGAAAACCTGCCAAGTATTCAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518325.2 |
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| CDS CAA 72 bp | TCTTGTACCCACTGGCACATTCTCGGGGACAGTTACTaGGTACTGAGGCAGAGAGAAGACAGGCGTGTGGTC | + |
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Preference number: 6 (lower is better) Translates to: SCTHWHILGDSY*VLRQREDRRVV Trigger: GACCACACGCCTGTCTTCTCTCTGCCTCAGTACCAAGTAACTGTCCCCGAGAATGTGCCAGTGGGTACAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000518325.2 ENST00000617050.1 |
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| CDS TCA 72 bp | TTCCAGAATCTCTGTCTTGTAGGTAGAAAAGAGCAATaGCTGTCCCAAGAGGTGTGTCTTCAGGGATTGAGC | + |
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Preference number: 6 (lower is better) Translates to: FQNLCLVGRKEQ*LSQEVCLQGLS Trigger: GCTCAATCCCTGAAGACACACCTCTTGGGACAGTCATTGCTCTTTTCTACCTACAAGACAGAGATTCTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000518325.2 ENST00000617050.1 |
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| CDS CAA 72 bp | CAGTACTTTTGCCTTTGTCAGACTACCAGGACCATCTaGAGCCTGAACCTCCATTTCATAGAAGGCAGTTTC | + |
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Preference number: 6 (lower is better) Translates to: QYFCLCQTTRTI*SLNLHFIEGSF Trigger: GAAACTGCCTTCTATGAAATGGAGGTTCAGGCTCAAGATGGTCCTGGTAGTCTGACAAAGGCAAAAGTACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000518325.2 ENST00000617050.1 |
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