Pregenerated sensors for PCDHGA5 (Homo sapiens)
Ensembl gene IDs: ENSG00000253485Ensembl transcript IDs: ENST00000518069.2, ENST00000611914.1
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACACTGATTTCTTCTCTCAACAAGCCCACATATCCAATAACTACATaGCTTAACACAAACTTTCCAGACTTTAGAATGCTACATGTTATC | + |
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Preference number: 1 (lower is better) Translates to: TLISSLNKPTYPITT*LNTNFPDFRMLHVI Trigger: GATAACATGTAGCATTCTAAAGTCTGGAAAGTTTGTGTTAAGCCATGTAGTTATTGGATATGTGGGCTTGTTGAGAGAAGAAATCAGTGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| 3UTR-3UTR GCA 90 bp | CAGCAGTATGTAACTCTCTGGAGGCTTTACATCACAGAACGAAGCCCAACCTTATCTCCCAGGCTGGAGTaGAGTGGCGCGATCTCGGCT | + |
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Preference number: 2 (lower is better) Translates to: QQYVTLWRLYITERSPTLSPRLE*SGAISA Trigger: AGCCGAGATCGCGCCACTGCACTCCAGCCTGGGAGA...TAAGGTTGGGCTTCGTTCTGTGATGTAAAGCCTCCAGAGAGTTACATACTGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| 3UTR-3UTR CCA 90 bp | CAGCAGTATGTAACTCTCTGGAGGCTTTACATCACAGAACGAAGCCCAACCTTAAGCCTTCCGAGTAGCTaGGACTACAGGCGCCTGCCA | + |
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Preference number: 2 (lower is better) Translates to: QQYVTLWRLYITERSPTLSLPSS*DYRRLP Trigger: TGGCAGGCGCCTGTAGTCCCAGCTACTCGGAAGGCT...TAAGGTTGGGCTTCGTTCTGTGATGTAAAGCCTCCAGAGAGTTACATACTGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR GCA 90 bp | TCTCGGCTTACTGCAAGCTCCTCCTCCCGGGTTCACCCCATTCTCCTGCCTCAGCACGGATGTGCGTGGTaGCGGAGAGTACCGGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: SRLTASSSSRVHPILLPQHGCAW*RRVPGL Trigger: GAGACCCGGTACTCTCCGGCACCACGCACATCCGTG...CTGAGGCAGGAGAATGGGGTGAACCCGGGAGGAGGAGCTTGCAGTAAGCCGAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR CCA 90 bp | TCTCGGCTTACTGCAAGCTCCTCCTCCCGGGTTCACCCCATTCTCCTGCCTCAGGCCCCAGCCCCTAGGTaGACTCGCCATTGCCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: SRLTASSSSRVHPILLPQAPAPR*TRHCLL Trigger: GAGAAGGCAATGGCGAGTCCACCTAGGGGCTGGGGC...CTGAGGCAGGAGAATGGGGTGAACCCGGGAGGAGGAGCTTGCAGTAAGCCGAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR TCA 90 bp | TCGGCTTACTGCAAGCTCCTCCTCCCGGGTTCACCCCATTCTCCTGCCTCAGCCAGAGCGCCTCCATCCTaGGCTACCACTTCCATGAGG | + |
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Preference number: 4 (lower is better) Translates to: SAYCKLLLPGSPHSPASARAPPS*ATTSMR Trigger: CCTCATGGAAGTGGTAGCTCAGGATGGAGGCGCTCT...GGCTGAGGCAGGAGAATGGGGTGAACCCGGGAGGAGGAGCTTGCAGTAAGCCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR TCA 90 bp | TCTCGGCTTACTGCAAGCTCCTCCTCCCGGGTTCACCCCATTCTCCTGCCTCAGGTGAGGAGGAGGTCGTaGACAGTCTCTTTCTCGCGG | + |
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Preference number: 4 (lower is better) Translates to: SRLTASSSSRVHPILLPQVRRRS*TVSFSR Trigger: CCGCGAGAAAGAGACTGTTCACGACCTCCTCCTCAC...CTGAGGCAGGAGAATGGGGTGAACCCGGGAGGAGGAGCTTGCAGTAAGCCGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR GCA 90 bp | TCTCGGCTTACTGCAAGCTCCTCCTCCCGGGTTCACCCCATTCTCCTGCCTCAGACCGTAACACGGATGTaGGTGGTGCCGGAGAGTACC | + |
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Preference number: 4 (lower is better) Translates to: SRLTASSSSRVHPILLPQTVTRM*VVPEST Trigger: GGTACTCTCCGGCACCACGCACATCCGTGTTACGGT...CTGAGGCAGGAGAATGGGGTGAACCCGGGAGGAGGAGCTTGCAGTAAGCCGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR TCA 90 bp | TCTCGGCTTACTGCAAGCTCCTCCTCCCGGGTTCACCCCATTCTCCTGCCTCAGAACTGGTCAGAGAGGTaGGGATCACTTCGGGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: SRLTASSSSRVHPILLPQNWSER*GSLRGH Trigger: ATGCCCCCGAAGTGATCCTCACCTCTCTGACCAGTT...CTGAGGCAGGAGAATGGGGTGAACCCGGGAGGAGGAGCTTGCAGTAAGCCGAGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR GCA 90 bp | TCTCGGCTTACTGCAAGCTCCTCCTCCCGGGTTCACCCCATTCTCCTGCCTCAGTTCACCCCATTCTCCTaGCTCAGCCTTCCGAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: SRLTASSSSRVHPILLPQFTPFS*LSLPSS Trigger: GCTACTCGGAAGGCTGAGGCAGGAGAATGGGGTGAA...CTGAGGCAGGAGAATGGGGTGAACCCGGGAGGAGGAGCTTGCAGTAAGCCGAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR TCA 90 bp | TCTCGGCTTACTGCAAGCTCCTCCTCCCGGGTTCACCCCATTCTCCTGCCTCAGCCACAAGATAGAGTGTaGGGTCCAGATCCTCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: SRLTASSSSRVHPILLPQPQDRV*GPDPQG Trigger: ACCCTGAGGATCTGGACCTCACACTCTATCTTGTGG...CTGAGGCAGGAGAATGGGGTGAACCCGGGAGGAGGAGCTTGCAGTAAGCCGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR GCA 90 bp | TCTCGGCTTACTGCAAGCTCCTCCTCCCGGGTTCACCCCATTCTCCTGCCTCAGAGGTGGACTCGCCATTaGCTTCTCTCTGCCCAATTT | + |
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Preference number: 4 (lower is better) Translates to: SRLTASSSSRVHPILLPQRWTRH*LLSAQF Trigger: AAATTGGGCAGAGAGAAGGCAATGGCGAGTCCACCT...CTGAGGCAGGAGAATGGGGTGAACCCGGGAGGAGGAGCTTGCAGTAAGCCGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR GCA 90 bp | TCTCGGCTTACTGCAAGCTCCTCCTCCCGGGTTCACCCCATTCTCCTGCCTCAGGTTGTCATTAACGTCTaGTACTTTCAAGGGGATGTG | + |
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Preference number: 4 (lower is better) Translates to: SRLTASSSSRVHPILLPQVVINV*YFQGDV Trigger: CACATCCCCTTGAAAGTAGCAGACGTTAATGACAAC...CTGAGGCAGGAGAATGGGGTGAACCCGGGAGGAGGAGCTTGCAGTAAGCCGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR TCA 90 bp | TCGGCTTACTGCAAGCTCCTCCTCCCGGGTTCACCCCATTCTCCTGCCTCAGCCAGTGATATTATAATCTaGAGTCTCTTCTCTGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: SAYCKLLLPGSPHSPASASDIII*SLFSVQ Trigger: CTGGACAGAGAAGAGACTTCAGATTATAATATCACT...GGCTGAGGCAGGAGAATGGGGTGAACCCGGGAGGAGGAGCTTGCAGTAAGCCGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR CCA 90 bp | CAGCAGTATGTAACTCTCTGGAGGCTTTACATCACAGAACGAAGCCCAACCTTAAGGGGCGGGGTTCCATaGTCCATGACGGTTAAAGTG | + |
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Preference number: 4 (lower is better) Translates to: QQYVTLWRLYITERSPTLRGGVP*SMTVKV Trigger: CACTTTAACCGTCATGGACCATGGAACCCCGCCCCT...TAAGGTTGGGCTTCGTTCTGTGATGTAAAGCCTCCAGAGAGTTACATACTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR GCA 90 bp | CTTTACACTGATTTCTTCTCTCAACAAGCCCACATATCCAATAACTACATGGCTTCTCCCAGGCTGGAGTaGAGTGGCGCGATCTCGGCT | + |
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Preference number: 4 (lower is better) Translates to: LYTDFFSQQAHISNNYMASPRLE*SGAISA Trigger: AGCCGAGATCGCGCCACTGCACTCCAGCCTGGGAGA...AGCCATGTAGTTATTGGATATGTGGGCTTGTTGAGAGAAGAAATCAGTGTAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR TCA 90 bp | ATATCAGTCCTATACATTATCCTTTCCAAAACACATTCACTAATGGTGTCTAGGCCGTGGCGGTTAGCATaGGCAGCCGAGTGCCCACAG | + |
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Preference number: 4 (lower is better) Translates to: ISVLYIILSKTHSLMVSRPWRLA*AAECPQ Trigger: CTGTGGGCACTCGGCTGCTCATGCTAACCGCCACGG...CCTAGACACCATTAGTGAATGTGTTTTGGAAAGGATAATGTATAGGACTGATAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR GCA 90 bp | CTTTACACTGATTTCTTCTCTCAACAAGCCCACATATCCAATAACTACATGGCTGCACACCCGCCAACCTaGTGCCTTCAGCCTGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: LYTDFFSQQAHISNNYMAAHPPT*CLQPEA Trigger: TGCTTCAGGCTGAAGGCAGCAGGTTGGCGGGTGTGC...AGCCATGTAGTTATTGGATATGTGGGCTTGTTGAGAGAAGAAATCAGTGTAAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR CCA 90 bp | CAGCAGTATGTAACTCTCTGGAGGCTTTACATCACAGAACGAAGCCCAACCTTACACAGGTATGTTCTCTaGAACACTCACGCTGTACTC | + |
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Preference number: 4 (lower is better) Translates to: QQYVTLWRLYITERSPTLHRYVL*NTHAVL Trigger: GAGTACAGCGTGAGTGTTCCAGAGAACATACCTGTG...TAAGGTTGGGCTTCGTTCTGTGATGTAAAGCCTCCAGAGAGTTACATACTGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR TCA 90 bp | ATTATCCTTTCCAAAACACATTCACTAATGGTGTCTAGGCAGACACTCAAAAGAGGTCAATGGGGGTCTTaGTACTGCCTAGGTCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: IILSKTHSLMVSRQTLKRGQWGS*YCLGQP Trigger: TGGCTGACCTAGGCAGTATCAAGACCCCCATTGACC...TCTTTTGAGTGTCTGCCTAGACACCATTAGTGAATGTGTTTTGGAAAGGATAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR GCA 90 bp | ATATCAGTCCTATACATTATCCTTTCCAAAACACATTCACTAATGGTGTCTAGGGGGCGCATTGTCGTTTaGGTCGAGGACCGTAACACG | + |
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Preference number: 4 (lower is better) Translates to: ISVLYIILSKTHSLMVSRGRIVV*VEDRNT Trigger: CGTGTTACGGTCCTCGACGCAAACGACAATGCGCCC...CCTAGACACCATTAGTGAATGTGTTTTGGAAAGGATAATGTATAGGACTGATAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR CCA 90 bp | ATATCAGTCCTATACATTATCCTTTCCAAAACACATTCACTAATGGTGTCTAGGCACGCTGTACTCGGATaGGGTGAACAGGGGCGCATT | + |
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Preference number: 4 (lower is better) Translates to: ISVLYIILSKTHSLMVSRHAVLG*GEQGRI Trigger: AATGCGCCCCTGTTCACCCCATCCGAGTACAGCGTG...CCTAGACACCATTAGTGAATGTGTTTTGGAAAGGATAATGTATAGGACTGATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR TCA 90 bp | CTTTACACTGATTTCTTCTCTCAACAAGCCCACATATCCAATAACTACATGGCTGAGCTACCACTTCCATaGGGTAGAATCTGGATTCTT | + |
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Preference number: 4 (lower is better) Translates to: LYTDFFSQQAHISNNYMAELPLP*GRIWIL Trigger: AAGAATCCAGATTCTACCTCATGGAAGTGGTAGCTC...AGCCATGTAGTTATTGGATATGTGGGCTTGTTGAGAGAAGAAATCAGTGTAAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR TCA 90 bp | CTTTACACTGATTTCTTCTCTCAACAAGCCCACATATCCAATAACTACATGGCTAAGAGAAAACTAACCTaGACTCGCCGTTCTTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: LYTDFFSQQAHISNNYMAKRKLT*TRRSSL Trigger: CAAAGAAGAACGGCGAGTTCAGGTTAGTTTTCTCTT...AGCCATGTAGTTATTGGATATGTGGGCTTGTTGAGAGAAGAAATCAGTGTAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR TCA 90 bp | CTTTACACTGATTTCTTCTCTCAACAAGCCCACATATCCAATAACTACATGGCTAAGGTTCCTTTACACTaGTTTCTTCTCTCAACAAGC | + |
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Preference number: 4 (lower is better) Translates to: LYTDFFSQQAHISNNYMAKVPLH*FLLSTS Trigger: GCTTGTTGAGAGAAGAAATCAGTGTAAAGGAACCTT...AGCCATGTAGTTATTGGATATGTGGGCTTGTTGAGAGAAGAAATCAGTGTAAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR CCA 90 bp | ATTATCCTTTCCAAAACACATTCACTAATGGTGTCTAGGCAGACACTCAAAAGAAGATTTCCCCCAGGTTaGAATCAAGTTGGAAAGTCT | + |
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Preference number: 4 (lower is better) Translates to: IILSKTHSLMVSRQTLKRRFPPG*NQVGKS Trigger: AGACTTTCCAACTTGATTCCAACCTGGGGGAAATCT...TCTTTTGAGTGTCTGCCTAGACACCATTAGTGAATGTGTTTTGGAAAGGATAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR GCA 90 bp | ATTATCCTTTCCAAAACACATTCACTAATGGTGTCTAGGCAGACACTCAAAAGAAGTTCTGGTTCAGCCTaGTGTTTCCTTATTTATCTA | + |
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Preference number: 4 (lower is better) Translates to: IILSKTHSLMVSRQTLKRSSGSA*CFLIYL Trigger: TAGATAAATAAGGAAACAGCAGGCTGAACCAGAACT...TCTTTTGAGTGTCTGCCTAGACACCATTAGTGAATGTGTTTTGGAAAGGATAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR CCA 90 bp | ATATCAGTCCTATACATTATCCTTTCCAAAACACATTCACTAATGGTGTCTAGGCAGTATGTAACTCTCTaGAGGCTTTACATCACAGAA | + |
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Preference number: 4 (lower is better) Translates to: ISVLYIILSKTHSLMVSRQYVTL*RLYITE Trigger: TTCTGTGATGTAAAGCCTCCAGAGAGTTACATACTG...CCTAGACACCATTAGTGAATGTGTTTTGGAAAGGATAATGTATAGGACTGATAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR CCA 90 bp | ATTATCCTTTCCAAAACACATTCACTAATGGTGTCTAGGCAGACACTCAAAAGAAGGTTGGAATCAAGTTaGAAAGTCTCCGAAATTTTT | + |
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Preference number: 4 (lower is better) Translates to: IILSKTHSLMVSRQTLKRRLESS*KVSEIF Trigger: AAAAATTTCGGAGACTTTCCAACTTGATTCCAACCT...TCTTTTGAGTGTCTGCCTAGACACCATTAGTGAATGTGTTTTGGAAAGGATAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR CAA 90 bp | TCTCGGCTTACTGCAAGCTCCTCCTCCCGGGTTCACCCCATTCTCCTGCCTCAGTCCAGCCCAAGGTCCTaGGCTATGTTGCCGACGAAG | + |
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Preference number: 5 (lower is better) Translates to: SRLTASSSSRVHPILLPQSSPRS*AMLPTK Trigger: CTTCGTCGGCAACATAGCCAAGGACCTTGGGCTGGA...CTGAGGCAGGAGAATGGGGTGAACCCGGGAGGAGGAGCTTGCAGTAAGCCGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR CAA 90 bp | CAGCAGTATGTAACTCTCTGGAGGCTTTACATCACAGAACGAAGCCCAACCTTAGTGAACAGGGGCGCATaGTCGTTTGCGTCGAGGACC | + |
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Preference number: 5 (lower is better) Translates to: QQYVTLWRLYITERSPTLVNRGA*SFASRT Trigger: GGTCCTCGACGCAAACGACAATGCGCCCCTGTTCAC...TAAGGTTGGGCTTCGTTCTGTGATGTAAAGCCTCCAGAGAGTTACATACTGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS CCA 90 bp | AAGCCGATGGGTACATATTCCCTGACGAAAATGGGCGTGGAGCGTTaGCTTTTCGTAGGAGCTTGTCTGGTCTGTGTGTTTAGTATGGAG | + |
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Preference number: 5 (lower is better) Translates to: KPMGTYSLTKMGVER*LFVGACLVCVFSME Trigger: CTCCATACTAAACACACAGACCAGACAAGCTCCTACGAAAAGCCAACGCTCCACGCCCATTTTCGTCAGGGAATATGTACCCATCGGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518069.2 |
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| CDS-3UTR CAA 90 bp | CAGCAGTATGTAACTCTCTGGAGGCTTTACATCACAGAACGAAGCCCAACCTTAGAGACACCTCTGGGATaGTTTTCTGTGACAGAGGTG | + |
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Preference number: 5 (lower is better) Translates to: QQYVTLWRLYITERSPTLETPLG*FSVTEV Trigger: CACCTCTGTCACAGAAAACAATCCCAGAGGTGTCTC...TAAGGTTGGGCTTCGTTCTGTGATGTAAAGCCTCCAGAGAGTTACATACTGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR CAA 90 bp | ATTATCCTTTCCAAAACACATTCACTAATGGTGTCTAGGCAGACACTCAAAAGAGGGTCAATGGGGGTCTaGATACTGCCTAGGTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: IILSKTHSLMVSRQTLKRGSMGV*ILPRSA Trigger: GGCTGACCTAGGCAGTATCAAGACCCCCATTGACCC...TCTTTTGAGTGTCTGCCTAGACACCATTAGTGAATGTGTTTTGGAAAGGATAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR CAA 90 bp | CAGCAGTATGTAACTCTCTGGAGGCTTTACATCACAGAACGAAGCCCAACCTTAGCCGTTCTTCTTTGTTaGCATCTACCTTATCAGACA | + |
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Preference number: 5 (lower is better) Translates to: QQYVTLWRLYITERSPTLAVLLC*HLPYQT Trigger: TGTCTGATAAGGTAGATGCAAACAAAGAAGAACGGC...TAAGGTTGGGCTTCGTTCTGTGATGTAAAGCCTCCAGAGAGTTACATACTGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS GCA 90 bp | CATTGCCTTCTCTCTGCCCAATTTTCTCTTAGTTCTGGTTCAGCCTaGTGTTTCCTTATTTATCTAAAGCCGATGGGTACATATTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: HCLLSAQFSLSSGSA*CFLIYLKPMGTYSL Trigger: CAGGGAATATGTACCCATCGGCTTTAGATAAATAAGGAAACAGCAGGCTGAACCAGAACTAAGAGAAAATTGGGCAGAGAGAAGGCAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000518069.2 ENST00000611914.1 |
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| CDS-3UTR CAA 90 bp | CTTTACACTGATTTCTTCTCTCAACAAGCCCACATATCCAATAACTACATGGCTGGGAAATTGGGTGGGTaGTCATTAACGTCTGCTACT | + |
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Preference number: 5 (lower is better) Translates to: LYTDFFSQQAHISNNYMAGKLGG*SLTSAT Trigger: AGTAGCAGACGTTAATGACAACCCACCCAATTTCCC...AGCCATGTAGTTATTGGATATGTGGGCTTGTTGAGAGAAGAAATCAGTGTAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR CAA 90 bp | ATATCAGTCCTATACATTATCCTTTCCAAAACACATTCACTAATGGTGTCTAGGCAGCTCCGGATACTTTaGTCCATCAGTTCCGCTTAC | + |
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Preference number: 5 (lower is better) Translates to: ISVLYIILSKTHSLMVSRQLRIL*SISSAY Trigger: GTAAGCGGAACTGATGGACAAAAGTATCCGGAGCTG...CCTAGACACCATTAGTGAATGTGTTTTGGAAAGGATAATGTATAGGACTGATAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR CAA 90 bp | ATATCAGTCCTATACATTATCCTTTCCAAAACACATTCACTAATGGTGTCTAGGCCAGTGATTGTAGAGTaGAGATTTCCCCCAGGTTGG | + |
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Preference number: 5 (lower is better) Translates to: ISVLYIILSKTHSLMVSRPVIVE*RFPPGW Trigger: CCAACCTGGGGGAAATCTCAACTCTACAATCACTGG...CCTAGACACCATTAGTGAATGTGTTTTGGAAAGGATAATGTATAGGACTGATAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS-3UTR CAA 90 bp | ATATCAGTCCTATACATTATCCTTTCCAAAACACATTCACTAATGGTGTCTAGGACTCGCCGTTCTTCTTaGTTTGCATCTACCTTATCA | + |
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Preference number: 5 (lower is better) Translates to: ISVLYIILSKTHSLMVSRTRRSS*FASTLS Trigger: TGATAAGGTAGATGCAAACAAAGAAGAACGGCGAGT...CCTAGACACCATTAGTGAATGTGTTTTGGAAAGGATAATGTATAGGACTGATAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS CCA 72 bp | CGGGTCTCTGGGCCTGAGAGAAACGCCAGTCCGTGTTaGGCGGGGCTTGCTGAACTCGCCGTTCTTCTTTGT | + |
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Preference number: 6 (lower is better) Translates to: RVSGPERNASPC*AGLAELAVLLC Trigger: ACAAAGAAGAACGGCGAGTTCAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000518069.2 |
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| CDS CAA 72 bp | CTCACGCTGTACTCGGATGGGGTGAACAGGGGCGCATaGTCGTTTGCGTCGAGGACCGTAACACGGATGTGC | + |
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Preference number: 6 (lower is better) Translates to: LTLYSDGVNRGA*SFASRTVTRMC Trigger: GCACATCCGTGTTACGGTCCTCGACGCAAACGACAATGCGCCCCTGTTCACCCCATCCGAGTACAGCGTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000518069.2 ENST00000611914.1 |
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| CDS CAA 72 bp | TGGGCGGGGCTTGCTGAACTCGCCGTTCTTCTTTGTTaGCATCTACCTTATCAGACATCAGAAGAGGCTCGC | + |
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Preference number: 6 (lower is better) Translates to: WAGLAELAVLLC*HLPYQTSEEAR Trigger: GCGAGCCTCTTCTGATGTCTGATAAGGTAGATGCAAACAAAGAAGAACGGCGAGTTCAGCAAGCCCCGCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000518069.2 |
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| CDS CAA 72 bp | GGGTACATATTCCCTGACGAAAATGGGCGTGGAGCGTaGGCTTTTCGTAGGAGCTTGTCTGGTCTGTGTGTT | + |
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Preference number: 6 (lower is better) Translates to: GYIFPDENGRGA*AFRRSLSGLCV Trigger: AACACACAGACCAGACAAGCTCCTACGAAAAGCCAACGCTCCACGCCCATTTTCGTCAGGGAATATGTACCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518069.2 |
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| CDS CCA 72 bp | GGTACATATTCCCTGACGAAAATGGGCGTGGAGCGTTaGCTTTTCGTAGGAGCTTGTCTGGTCTGTGTGTTT | + |
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Preference number: 6 (lower is better) Translates to: GTYSLTKMGVER*LFVGACLVCVF Trigger: AAACACACAGACCAGACAAGCTCCTACGAAAAGCCAACGCTCCACGCCCATTTTCGTCAGGGAATATGTACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518069.2 |
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| CDS TCA 72 bp | CAACAAGAGCGCCTCCATCCTGAGCTACCACTTCCATaGGGTAGAATCTGGATTCTTCATAGTCCAGTGATT | + |
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Preference number: 6 (lower is better) Translates to: QQERLHPELPLP*GRIWILHSPVI Trigger: AATCACTGGACTATGAAGAATCCAGATTCTACCTCATGGAAGTGGTAGCTCAGGATGGAGGCGCTCTTGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000518069.2 ENST00000611914.1 |
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| CDS TCA 72 bp | TGTTCTGGTCATCCTTACCGAAAGAGAAAACTAACCTaGACTCGCCGTTCTTCTTTGTTTGCATCTACCTTA | + |
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Preference number: 6 (lower is better) Translates to: CSGHPYRKRKLT*TRRSSLFASTL Trigger: TAAGGTAGATGCAAACAAAGAAGAACGGCGAGTTCAGGTTAGTTTTCTCTTTCGGTAAGGATGACCAGAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611914.1 |
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| CDS CAA 72 bp | AGAATCTGGATTCTTCATAGTCCAGTGATTGTAGAGTaGAGATTTCCCCCAGGTTGGAATCAAGTTGGAAAG | + |
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Preference number: 6 (lower is better) Translates to: RIWILHSPVIVE*RFPPGWNQVGK Trigger: CTTTCCAACTTGATTCCAACCTGGGGGAAATCTCAACTCTACAATCACTGGACTATGAAGAATCCAGATTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000518069.2 ENST00000611914.1 |
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