Pregenerated sensors for PCDHGA4 (Homo sapiens)
Ensembl gene IDs: ENSG00000262576Ensembl transcript IDs: ENST00000571252.3, ENST00000612927.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CAGAACCCCCAGGAGAAGGCAGATCTGGAGCAGCCGGGTGTGGTCTaGGCGAGCAGGAGGCGCCGCCATTACAACCCCGCCGCGGAGTCG | + |
|
Preference number: 5 (lower is better) Translates to: QNPQEKADLEQPGVV*ASRRRRHYNPAAES Trigger: CGACTCCGCGGCGGGGTTGTAATGGCGGCGCCTCCTGCTCGCCCAGACCACACCCGGCTGCTCCAGATCTGCCTTCTCCTGGGGGTTCTG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000571252.3 ENST00000612927.1 |
||
| CDS CCA 90 bp | TCCACCAGAACCCCCAGGAGAAGGCAGATCTGGAGCAGCCGGGTGTaGTCTGGGCGAGCAGGAGGCGCCGCCATTACAACCCCGCCGCGG | + |
|
Preference number: 5 (lower is better) Translates to: STRTPRRRQIWSSRV*SGRAGGAAITTPPR Trigger: CCGCGGCGGGGTTGTAATGGCGGCGCCTCCTGCTCGCCCAGACCACACCCGGCTGCTCCAGATCTGCCTTCTCCTGGGGGTTCTGGTGGA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000571252.3 ENST00000612927.1 |
||
| CDS CCA 90 bp | TGCACGTTGAAAAGTGCAATTACTGTACCCGGGGAAGAAGATTCCTaGACTGAGCTGGTGAGAGATGTAACTGTGACTTCTGGTGCGTTG | + |
|
Preference number: 5 (lower is better) Translates to: CTLKSAITVPGEEDS*TELVRDVTVTSGAL Trigger: CAACGCACCAGAAGTCACAGTTACATCTCTCACCAGCTCAGTCCAGGAATCTTCTTCCCCGGGTACAGTAATTGCACTTTTCAACGTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000571252.3 ENST00000612927.1 |
||
| CDS CCA 72 bp | CAGGAGAAGGCAGATCTGGAGCAGCCGGGTGTGGTCTaGGCGAGCAGGAGGCGCCGCCATTACAACCCCGCC | + |
|
Preference number: 6 (lower is better) Translates to: QEKADLEQPGVV*ASRRRRHYNPA Trigger: GGCGGGGTTGTAATGGCGGCGCCTCCTGCTCGCCCAGACCACACCCGGCTGCTCCAGATCTGCCTTCTCCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000571252.3 ENST00000612927.1 |
||
| CDS CAA 90 bp | GCCTGGCCTCCATGTTACTTCTTCTCCTTCTTGCCCGACTTCTTCTaGTTGCCATTGCCACCTGCTGGGGCCTTGCCATCCCGCTTGCCA | + |
|
Preference number: 6 (lower is better) Translates to: AWPPCYFFSFLPDFF*LPLPPAGALPSRLP Trigger: TGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAACATGGAGGCCAGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000571252.3 |
||
| CDS CAA 90 bp | TGGCCTCCATGTTACTTCTTCTCCTTCTTGCCCGACTTCTTCTTGTaGCCATTGCCACCTGCTGGGGCCTTGCCATCCCGCTTGCCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: WPPCYFFSFLPDFFL*PLPPAGALPSRLPA Trigger: AGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAACATGGAGGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000571252.3 |
||
| CDS TCA 72 bp | AGTGCATTCACAGCCAGAGCTCTCAGGGCTTCCGCTTaGAGCTTTCATAAAGCTCCAGAGCCAGTGCTTTGT | + |
|
Preference number: 6 (lower is better) Translates to: SAFTARALRASA*SFHKAPEPVLC Trigger: ACAAAGCACTGGCTCTGGAGCTTTATGAAAGCTTCAAGCGGAAGCCCTGAGAGCTCTGGCTGTGAATGCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000571252.3 ENST00000612927.1 |
||
| CDS TCA 72 bp | TGCAATTACTGTACCCGGGGAAGAAGATTCCTGGACTaGGCTGGTGAGAGATGTAACTGTGACTTCTGGTGC | + |
|
Preference number: 6 (lower is better) Translates to: CNYCTRGRRFLD*AGERCNCDFWC Trigger: GCACCAGAAGTCACAGTTACATCTCTCACCAGCTCAGTCCAGGAATCTTCTTCCCCGGGTACAGTAATTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000571252.3 ENST00000612927.1 |
||
| CDS CAA 90 bp | TCCTGGACTGAGCTGGTGAGAGATGTAACTGTGACTTCTGGTGCGTaGTCATTTTCATCCAGAACTGTCACCAGTACCTTGCTTCTAGCT | + |
|
Preference number: 6 (lower is better) Translates to: SWTELVRDVTVTSGA*SFSSRTVTSTLLLA Trigger: AGCTAGAAGCAAGGTACTGGTGACAGTTCTGGATGAAAATGACAACGCACCAGAAGTCACAGTTACATCTCTCACCAGCTCAGTCCAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000571252.3 ENST00000612927.1 |
||
| CDS CAA 90 bp | GAACATGTGACTAGGCCATTTCCTCCTGAGTCACTGTCATGCACGTaGAAAAGTGCAATTACTGTACCCGGGGAAGAAGATTCCTGGACT | + |
|
Preference number: 6 (lower is better) Translates to: EHVTRPFPPESLSCT*KSAITVPGEEDSWT Trigger: AGTCCAGGAATCTTCTTCCCCGGGTACAGTAATTGCACTTTTCAACGTGCATGACAGTGACTCAGGAGGAAATGGCCTAGTCACATGTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000571252.3 ENST00000612927.1 |
||
| CDS CAA 90 bp | CTACCCGCAAAATCTTCACTGTATCTTCTAGAAGAATCTCCAGGTTaGTCACACAGTTTGGAGATCTGTCGCAGAGCTCCTCCCTGTCTA | + |
|
Preference number: 6 (lower is better) Translates to: LPAKSSLYLLEESPG*SHSLEICRRAPPCL Trigger: TAGACAGGGAGGAGCTCTGCGACAGATCTCCAAACTGTGTGACAAACCTGGAGATTCTTCTAGAAGATACAGTGAAGATTTTGCGGGTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000571252.3 ENST00000612927.1 |
||
| CDS TCA 72 bp | CTAGGCCATTTCCTCCTGAGTCACTGTCATGCACGTTaGAAAGTGCAATTACTGTACCCGGGGAAGAAGATT | + |
|
Preference number: 6 (lower is better) Translates to: LGHFLLSHCHAR*KVQLLYPGKKI Trigger: AATCTTCTTCCCCGGGTACAGTAATTGCACTTTTCAACGTGCATGACAGTGACTCAGGAGGAAATGGCCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000571252.3 ENST00000612927.1 |
||
| CDS CAA 72 bp | ACTAGGCCATTTCCTCCTGAGTCACTGTCATGCACGTaGAAAAGTGCAATTACTGTACCCGGGGAAGAAGAT | + |
|
Preference number: 6 (lower is better) Translates to: TRPFPPESLSCT*KSAITVPGEED Trigger: ATCTTCTTCCCCGGGTACAGTAATTGCACTTTTCAACGTGCATGACAGTGACTCAGGAGGAAATGGCCTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000571252.3 ENST00000612927.1 |
||
| CDS TCA 72 bp | CCCAATATTGTTATATCCCCACTCAGAGAATTCAACTaGAATAGCTGTGATATTTTGTCTCTTACTTTCCGG | + |
|
Preference number: 6 (lower is better) Translates to: PNIVISPLREFN*NSCDILSLTFR Trigger: CCGGAAAGTAAGAGACAAAATATCACAGCTATTTCAGTTGAATTCTCTGAGTGGGGATATAACAATATTGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000571252.3 ENST00000612927.1 |
||