Pregenerated sensors for PCDHGA12 (Homo sapiens)
Ensembl gene IDs: ENSG00000253159Ensembl transcript IDs: ENST00000252085.4, ENST00000613314.1
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | GAGGCCTGGGTGCAGGTAAGGAGAAGCTGGGCTGGTTaGGGAGAGGCCGCCCTGTGGCTCTTGGCCTGGCCT | + |
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Preference number: 3 (lower is better) Translates to: EAWVQVRRSWAG*GEAALWLLAWP Trigger: AGGCCAGGCCAAGAGCCACAGGGCGGCCTCTCCCCAACCAGCCCAGCTTCTCCTTACCTGCACCCAGGCCTC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000252085.4 |
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| 3UTR CCA 72 bp | CCTGGGCAGTGGCCTTCACGGAAGAGAAACGGCACCTaGCAAGGTGAAGGACTGAGGCTTCAGGAGGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: PGQWPSRKRNGT*QGEGLRLQEGR Trigger: CCTGCCCTCCTGAAGCCTCAGTCCTTCACCTTGCCAGGTGCCGTTTCTCTTCCGTGAAGGCCACTGCCCAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000252085.4 |
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| 3UTR CCA 72 bp | TTATCTTACCACCCCATACTGTCTTGGAACATGCAGTaGAGTCTCTTGTTTGAGGAGGAGGTGGGGGAAGTC | + |
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Preference number: 3 (lower is better) Translates to: LSYHPILSWNMQ*SLLFEEEVGEV Trigger: GACTTCCCCCACCTCCTCCTCAAACAAGAGACTCCACTGCATGTTCCAAGACAGTATGGGGTGGTAAGATAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000252085.4 |
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| 3UTR CCA 72 bp | TATAAAACTTGCGTGAGACACAGGAAGAGGGTGGGGTaGGAGCTACGTGACTATGCGAAGAGAAGCGCTTAT | + |
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Preference number: 3 (lower is better) Translates to: YKTCVRHRKRVG*ELRDYAKRSAY Trigger: ATAAGCGCTTCTCTTCGCATAGTCACGTAGCTCCCACCCCACCCTCTTCCTGTGTCTCACGCAAGTTTTATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000252085.4 |
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| 3UTR CCA 72 bp | CACTTCCCTTCCTTATCTTACCACCCCATACTGTCTTaGAACATGCAGTGGAGTCTCTTGTTTGAGGAGGAG | + |
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Preference number: 3 (lower is better) Translates to: HFPSLSYHPILS*NMQWSLLFEEE Trigger: CTCCTCCTCAAACAAGAGACTCCACTGCATGTTCCAAGACAGTATGGGGTGGTAAGATAAGGAAGGGAAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000252085.4 |
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| 3UTR CCA 72 bp | CCCTATTATGTAGTGGGAAGGGTCCAGCCTAGTTATTaGTTTATGGCTGGAATCTGGAGGATGTTGTCAGTC | + |
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Preference number: 3 (lower is better) Translates to: PYYVVGRVQPSY*FMAGIWRMLSV Trigger: GACTGACAACATCCTCCAGATTCCAGCCATAAACCAATAACTAGGCTGGACCCTTCCCACTACATAATAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000252085.4 |
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| CDS TCA 90 bp | GTGTCATCGCCATTTTGGGAGCCGCTGGTGCCGGGTCTCTGGGCCTaGGAGAAACGCCAGTCCGTGTTGGGCGGGGCTTGCTCAATTAAC | + |
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Preference number: 5 (lower is better) Translates to: VSSPFWEPLVPGLWA*EKRQSVLGGACSIN Trigger: GTTAATTGAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000252085.4 |
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| CDS GCA 90 bp | CAGGGATGGTTCATTCCTAGCTATCTGCTTTGTGCTTCAGGCGCGTaGAAGGCGAGCAGGATCTCCGCTTTTCTCTCCCCGATTGGTGAA | + |
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Preference number: 5 (lower is better) Translates to: QGWFIPSYLLCASGA*KASRISAFLSPIGE Trigger: TTCACCAATCGGGGAGAGAAAAGCGGAGATCCTGCTCGCCTTGCACGCGCCTGAAGCACAAAGCAGATAGCTAGGAATGAACCATCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000252085.4 |
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| CDS GCA 90 bp | CCGTTGTTTCCACATACTCCCAGGGATGGTTCATTCCTAGCTATCTaGTTTGTGCTTCAGGCGCGTGCAAGGCGAGCAGGATCTCCGCTT | + |
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Preference number: 5 (lower is better) Translates to: PLFPHTPRDGSFLAI*FVLQARARRAGSPL Trigger: AAGCGGAGATCCTGCTCGCCTTGCACGCGCCTGAAGCACAAAGCAGATAGCTAGGAATGAACCATCCCTGGGAGTATGTGGAAACAACGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000252085.4 |
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| CDS CCA 90 bp | CCACTGAAGTCAGGAGCAGTTCCTTCGCCCATAGAATGGGACAGTTaGGAAGTCAGAGCTCCTCCGTTGTTTCCACATACTCCCAGGGAT | + |
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Preference number: 5 (lower is better) Translates to: PLKSGAVPSPIEWDS*EVRAPPLFPHTPRD Trigger: ATCCCTGGGAGTATGTGGAAACAACGGAGGAGCTCTGACTTCCCAACTGTCCCATTCTATGGGCGAAGGAACTGCTCCTGACTTCAGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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| CDS CCA 90 bp | TTGGGAAGTCAGAGCTCCTCCGTTGTTTCCACATACTCCCAGGGATaGTTCATTCCTAGCTATCTGCTTTGTGCTTCAGGCGCGTGCAAG | + |
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Preference number: 5 (lower is better) Translates to: LGSQSSSVVSTYSQG*FIPSYLLCASGACK Trigger: CTTGCACGCGCCTGAAGCACAAAGCAGATAGCTAGGAATGAACCATCCCTGGGAGTATGTGGAAACAACGGAGGAGCTCTGACTTCCCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000252085.4 |
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| CDS GCA 72 bp | CCTTCGTCAGGGTCGGTAGCGTTGACTACAAGCAGCTaGGTGCCCAAGGCCAGATTCTCCGGAACGCTCGCG | + |
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Preference number: 6 (lower is better) Translates to: PSSGSVALTTSS*VPKARFSGTLA Trigger: CGCGAGCGTTCCGGAGAATCTGGCCTTGGGCACGCAGCTGCTTGTAGTCAACGCTACCGACCCTGACGAAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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| CDS CCA 72 bp | CGGGTCTCTGGGCCTGAGAGAAACGCCAGTCCGTGTTaGGCGGGGCTTGCTCAATTAACCCATGACTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: RVSGPERNASPC*AGLAQLTHDCL Trigger: AAGACAGTCATGGGTTAATTGAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000252085.4 |
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| CDS CAA 90 bp | GCCGCCTTGTCGTCCACATACCGGAAGGAATACCTCACTTCCGCATaGACTCCTTCGTCAGGGTCGGTAGCGTTGACTACAAGCAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: AALSSTYRKEYLTSA*TPSSGSVALTTSSC Trigger: GCAGCTGCTTGTAGTCAACGCTACCGACCCTGACGAAGGAGTCAATGCGGAAGTGAGGTATTCCTTCCGGTATGTGGACGACAAGGCGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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| CDS GCA 72 bp | TTCATTCCTAGCTATCTGCTTTGTGCTTCAGGCGCGTaGAAGGCGAGCAGGATCTCCGCTTTTCTCTCCCCG | + |
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Preference number: 6 (lower is better) Translates to: FIPSYLLCASGA*KASRISAFLSP Trigger: CGGGGAGAGAAAAGCGGAGATCCTGCTCGCCTTGCACGCGCCTGAAGCACAAAGCAGATAGCTAGGAATGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000252085.4 |
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| CDS GCA 72 bp | CCACATACTCCCAGGGATGGTTCATTCCTAGCTATCTaGTTTGTGCTTCAGGCGCGTGCAAGGCGAGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: PHTPRDGSFLAI*FVLQARARRAG Trigger: TCCTGCTCGCCTTGCACGCGCCTGAAGCACAAAGCAGATAGCTAGGAATGAACCATCCCTGGGAGTATGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000252085.4 |
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| CDS CAA 90 bp | ACCACTGAAGTCAGGAGCAGTTCCTTCGCCCATAGAATGGGACAGTaGGGAAGTCAGAGCTCCTCCGTTGTTTCCACATACTCCCAGGGA | + |
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Preference number: 6 (lower is better) Translates to: TTEVRSSSFAHRMGQ*GSQSSSVVSTYSQG Trigger: TCCCTGGGAGTATGTGGAAACAACGGAGGAGCTCTGACTTCCCAACTGTCCCATTCTATGGGCGAAGGAACTGCTCCTGACTTCAGTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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| CDS CCA 72 bp | CCACTGAAGTCAGGAGCAGTTCCTTCGCCCATAGAATaGGACAGTTGGGAAGTCAGAGCTCCTCCGTTGTTT | + |
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Preference number: 6 (lower is better) Translates to: PLKSGAVPSPIE*DSWEVRAPPLF Trigger: AAACAACGGAGGAGCTCTGACTTCCCAACTGTCCCATTCTATGGGCGAAGGAACTGCTCCTGACTTCAGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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| CDS CAA 72 bp | GTCAGGAGCAGTTCCTTCGCCCATAGAATGGGACAGTaGGGAAGTCAGAGCTCCTCCGTTGTTTCCACATAC | + |
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Preference number: 6 (lower is better) Translates to: VRSSSFAHRMGQ*GSQSSSVVSTY Trigger: GTATGTGGAAACAACGGAGGAGCTCTGACTTCCCAACTGTCCCATTCTATGGGCGAAGGAACTGCTCCTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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| CDS CAA 90 bp | CCTTCGCCCATAGAATGGGACAGTTGGGAAGTCAGAGCTCCTCCGTaGTTTCCACATACTCCCAGGGATGGTTCATTCCTAGCTATCTGC | + |
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Preference number: 6 (lower is better) Translates to: PSPIEWDSWEVRAPP*FPHTPRDGSFLAIC Trigger: GCAGATAGCTAGGAATGAACCATCCCTGGGAGTATGTGGAAACAACGGAGGAGCTCTGACTTCCCAACTGTCCCATTCTATGGGCGAAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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| CDS CCA 72 bp | CAGAGCTCCTCCGTTGTTTCCACATACTCCCAGGGATaGTTCATTCCTAGCTATCTGCTTTGTGCTTCAGGC | + |
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Preference number: 6 (lower is better) Translates to: QSSSVVSTYSQG*FIPSYLLCASG Trigger: GCCTGAAGCACAAAGCAGATAGCTAGGAATGAACCATCCCTGGGAGTATGTGGAAACAACGGAGGAGCTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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| CDS CCA 72 bp | TCAGGAGCAGTTCCTTCGCCCATAGAATGGGACAGTTaGGAAGTCAGAGCTCCTCCGTTGTTTCCACATACT | + |
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Preference number: 6 (lower is better) Translates to: SGAVPSPIEWDS*EVRAPPLFPHT Trigger: AGTATGTGGAAACAACGGAGGAGCTCTGACTTCCCAACTGTCCCATTCTATGGGCGAAGGAACTGCTCCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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| CDS CAA 72 bp | ATAGAATGGGACAGTTGGGAAGTCAGAGCTCCTCCGTaGTTTCCACATACTCCCAGGGATGGTTCATTCCTA | + |
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Preference number: 6 (lower is better) Translates to: IEWDSWEVRAPP*FPHTPRDGSFL Trigger: TAGGAATGAACCATCCCTGGGAGTATGTGGAAACAACGGAGGAGCTCTGACTTCCCAACTGTCCCATTCTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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| CDS CAA 72 bp | GGACTTTGGCTCGCGCAGAATATCCTGCATTATCCATaGCTTGCACTTCCATCTGGTAGAATCCTGACTCCT | + |
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Preference number: 6 (lower is better) Translates to: GLWLAQNILHYP*LALPSGRILTP Trigger: AGGAGTCAGGATTCTACCAGATGGAAGTGCAAGCAATGGATAATGCAGGATATTCTGCGCGAGCCAAAGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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| CDS CAA 72 bp | GCATTGTCGTTCACGTCCAGAACAGTGATCAGGACTTaGGCTCGCGCAGAATATCCTGCATTATCCATTGCT | + |
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Preference number: 6 (lower is better) Translates to: ALSFTSRTVIRT*ARAEYPALSIA Trigger: AGCAATGGATAATGCAGGATATTCTGCGCGAGCCAAAGTCCTGATCACTGTTCTGGACGTGAACGACAATGC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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| CDS CAA 72 bp | CCTGAATTACAATCTAGTTTGAAAACTTGGGCCGCCTaGTCGTCCACATACCGGAAGGAATACCTCACTTCC | + |
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Preference number: 6 (lower is better) Translates to: PELQSSLKTWAA*SSTYRKEYLTS Trigger: GGAAGTGAGGTATTCCTTCCGGTATGTGGACGACAAGGCGGCCCAAGTTTTCAAACTAGATTGTAATTCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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| CDS CAA 90 bp | GATATTGTCCCTGAATTACAATCTAGTTTGAAAACTTGGGCCGCCTaGTCGTCCACATACCGGAAGGAATACCTCACTTCCGCATTGACT | + |
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Preference number: 6 (lower is better) Translates to: DIVPELQSSLKTWAA*SSTYRKEYLTSALT Trigger: AGTCAATGCGGAAGTGAGGTATTCCTTCCGGTATGTGGACGACAAGGCGGCCCAAGTTTTCAAACTAGATTGTAATTCAGGGACAATATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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| CDS TCA 72 bp | TTCACTTTATCCTCCATCAGAATGTCTAGATTTAATTaGCACTTGATGGCCCCCATACAGAGCTCCTCCCGG | + |
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Preference number: 6 (lower is better) Translates to: FTLSSIRMSRFN*HLMAPIQSSSR Trigger: CCGGGAGGAGCTCTGTATGGGGGCCATCAAGTGTCAATTAAATCTAGACATTCTGATGGAGGATAAAGTGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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| CDS CCA 72 bp | GATATTGTCCCTGAATTACAATCTAGTTTGAAAACTTaGGCCGCCTTGTCGTCCACATACCGGAAGGAATAC | + |
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Preference number: 6 (lower is better) Translates to: DIVPELQSSLKT*AALSSTYRKEY Trigger: GTATTCCTTCCGGTATGTGGACGACAAGGCGGCCCAAGTTTTCAAACTAGATTGTAATTCAGGGACAATATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000252085.4 ENST00000613314.1 |
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