Pregenerated sensors for PCDHGA11 (Homo sapiens)
Ensembl gene IDs: ENSG00000253873Ensembl transcript IDs: ENST00000398587.7, ENST00000518882.2, ENST00000622044.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCCCAACCCAGGGACTAAGAATGGCCTGGCTGGCCCACCCTTCCTaGTGGGGCTCCGCTGACCCTTCCACCAGTGGCACCTCTGGAGTA | + |
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Preference number: 1 (lower is better) Translates to: SPTQGLRMAWLAHPS*WGSADPSTSGTSGV Trigger: TACTCCAGAGGTGCCACTGGTGGAAGGGTCAGCGGAGCCCCAGCAGGAAGGGTGGGCCAGCCAGGCCATTCTTAGTCCCTGGGTTGGGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000398587.7 |
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| 3UTR GCA 90 bp | CCTGGGCTGAGACTTTCTGTTCATTTGGTCCCTGCCCTAGCTCCCTaGCTCCCCAACCCAGGGACTAAGAATGGCCTGGCTGGCCCACCC | + |
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Preference number: 1 (lower is better) Translates to: PGLRLSVHLVPALAP*LPNPGTKNGLAGPP Trigger: GGGTGGGCCAGCCAGGCCATTCTTAGTCCCTGGGTTGGGGAGGCAGGGAGCTAGGGCAGGGACCAAATGAACAGAAAGTCTCAGCCCAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000398587.7 |
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| CDS TCA 90 bp | GTGTCATCGCCATTTTGGGAGCCGCTGGTGCCGGGTCTCTGGGCCTaGGAGAAACGCCAGTCCGTGTTGGGCGGGGCTTGCTCGCCCGTG | + |
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Preference number: 5 (lower is better) Translates to: VSSPFWEPLVPGLWA*EKRQSVLGGACSPV Trigger: CACGGGCGAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000518882.2 |
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| CDS CCA 90 bp | GCAGCAGCAGCCGACTGCGGTCCCCGCGCTGTAGCCGATTCGCCATaGCAGGCTCTAAGCCGATATTCCGCGGTTTCTCGAGCTGGTTGG | + |
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Preference number: 5 (lower is better) Translates to: AAAADCGPRAVADSP*QALSRYSAVSRAGW Trigger: CCAACCAGCTCGAGAAACCGCGGAATATCGGCTTAGAGCCTGCCATGGCGAATCGGCTACAGCGCGGGGACCGCAGTCGGCTGCTGCTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398587.7 ENST00000622044.1 |
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| CDS GCA 90 bp | GGATCCCTAGCATTAGGAAGAGCAAATCGCGCCCCAGGAATTGCGTaGTCACTGACTTTTATCTCCACTTCGTCCTCCTGGAAGCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: GSLALGRANRAPGIA*SLTFISTSSSWKLG Trigger: CCCCAGCTTCCAGGAGGACGAAGTGGAGATAAAAGTCAGTGAGCACGCAATTCCTGGGGCGCGATTTGCTCTTCCTAATGCTAGGGATCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398587.7 ENST00000518882.2 ENST00000622044.1 |
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| CDS GCA 90 bp | ATCTGGATCCCTAGCATTAGGAAGAGCAAATCGCGCCCCAGGAATTaGGTGCTCACTGACTTTTATCTCCACTTCGTCCTCCTGGAAGCT | + |
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Preference number: 5 (lower is better) Translates to: IWIPSIRKSKSRPRN*VLTDFYLHFVLLEA Trigger: AGCTTCCAGGAGGACGAAGTGGAGATAAAAGTCAGTGAGCACGCAATTCCTGGGGCGCGATTTGCTCTTCCTAATGCTAGGGATCCAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398587.7 ENST00000518882.2 ENST00000622044.1 |
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| CDS TCA 90 bp | CAGGCTCTAAGCCGATATTCCGCGGTTTCTCGAGCTGGTTGGTTGTaGATCGGCTTATGTATCTATGAAGTCCTAGGCCGACTACATCCA | + |
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Preference number: 5 (lower is better) Translates to: QALSRYSAVSRAGWL*IGLCIYEVLGRLHP Trigger: TGGATGTAGTCGGCCTAGGACTTCATAGATACATAAGCCGATTCACAACCAACCAGCTCGAGAAACCGCGGAATATCGGCTTAGAGCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000398587.7 ENST00000622044.1 |
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| CDS TCA 90 bp | CGCGGTTTCTCGAGCTGGTTGGTTGTGAATCGGCTTATGTATCTATaGAGTCCTAGGCCGACTACATCCAAAATATATCAGAAAGCGAAG | + |
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Preference number: 5 (lower is better) Translates to: RGFSSWLVVNRLMYL*SPRPTTSKIYQKAK Trigger: CTTCGCTTTCTGATATATTTTGGATGTAGTCGGCCTAGGACTTCATAGATACATAAGCCGATTCACAACCAACCAGCTCGAGAAACCGCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398587.7 ENST00000622044.1 |
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| CDS TCA 90 bp | GTGCCAAGACACCAACAATTAGGAGGCAGAGAAATAAATCTCACCTaGTTACTTGTCGGGTCACATTTGCCTAAAATGATAGCTGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: VPRHQQLGGREINLT*LLVGSHLPKMIAES Trigger: AGACTCAGCTATCATTTTAGGCAAATGTGACCCGACAAGTAATCAGGTGAGATTTATTTCTCTGCCTCCTAATTGTTGGTGTCTTGGCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000622044.1 |
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| CDS CCA 72 bp | CGGGTCTCTGGGCCTGAGAGAAACGCCAGTCCGTGTTaGGCGGGGCTTGCTCGCCCGTGTGCTCCCCCACCG | + |
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Preference number: 6 (lower is better) Translates to: RVSGPERNASPC*AGLARPCAPPP Trigger: CGGTGGGGGAGCACACGGGCGAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000518882.2 |
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| CDS CCA 72 bp | GCCGACTGCGGTCCCCGCGCTGTAGCCGATTCGCCATaGCAGGCTCTAAGCCGATATTCCGCGGTTTCTCGA | + |
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Preference number: 6 (lower is better) Translates to: ADCGPRAVADSP*QALSRYSAVSR Trigger: TCGAGAAACCGCGGAATATCGGCTTAGAGCCTGCCATGGCGAATCGGCTACAGCGCGGGGACCGCAGTCGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398587.7 ENST00000622044.1 |
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| CDS CCA 72 bp | CGGGTCTCTGGGCCTGAGAGAAACGCCAGTCCGTGTTaGGCGGGGCTTGCTGATTACTTGTCGGGTCACATT | + |
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Preference number: 6 (lower is better) Translates to: RVSGPERNASPC*AGLADYLSGHI Trigger: AATGTGACCCGACAAGTAATCAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000398587.7 |
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| CDS CAA 72 bp | CGGTCCAGGCTTCCCTCCAGTACTAGCTCTGGATTCTaGGCCCCATCCGTTCTGCCCCGCAGTTGCAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: RSRLPSSTSSGF*APSVLPRSCKE Trigger: TTCCTTGCAACTGCGGGGCAGAACGGATGGGGCCAAGAATCCAGAGCTAGTACTGGAGGGAAGCCTGGACCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398587.7 ENST00000518882.2 ENST00000622044.1 |
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| CDS CCA 72 bp | GGTCCAGGCTTCCCTCCAGTACTAGCTCTGGATTCTTaGCCCCATCCGTTCTGCCCCGCAGTTGCAAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: GPGFPPVLALDS*PHPFCPAVARK Trigger: TTTCCTTGCAACTGCGGGGCAGAACGGATGGGGCCAAGAATCCAGAGCTAGTACTGGAGGGAAGCCTGGACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398587.7 ENST00000518882.2 ENST00000622044.1 |
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| CDS TCA 72 bp | GAAGAGCAAATCGCGCCCCAGGAATTGCGTGCTCACTaGCTTTTATCTCCACTTCGTCCTCCTGGAAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: EEQIAPQELRAH*LLSPLRPPGSW Trigger: CCAGCTTCCAGGAGGACGAAGTGGAGATAAAAGTCAGTGAGCACGCAATTCCTGGGGCGCGATTTGCTCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398587.7 ENST00000518882.2 ENST00000622044.1 |
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| CDS CCA 72 bp | GGATGTGATCATTTACATCGAGGACCACCACACGAATaGGAACTGCGCCCTTTCGGATGGGATCGCCTCCAT | + |
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Preference number: 6 (lower is better) Translates to: GCDHLHRGPPHE*ELRPFGWDRLH Trigger: ATGGAGGCGATCCCATCCGAAAGGGCGCAGTTCCCATTCGTGTGGTGGTCCTCGATGTAAATGATCACATCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000398587.7 ENST00000518882.2 ENST00000622044.1 |
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| CDS GCA 72 bp | GCATTAGGAAGAGCAAATCGCGCCCCAGGAATTGCGTaGTCACTGACTTTTATCTCCACTTCGTCCTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: ALGRANRAPGIA*SLTFISTSSSW Trigger: CCAGGAGGACGAAGTGGAGATAAAAGTCAGTGAGCACGCAATTCCTGGGGCGCGATTTGCTCTTCCTAATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398587.7 ENST00000518882.2 ENST00000622044.1 |
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| CDS GCA 72 bp | CCTAGCATTAGGAAGAGCAAATCGCGCCCCAGGAATTaGGTGCTCACTGACTTTTATCTCCACTTCGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: PSIRKSKSRPRN*VLTDFYLHFVL Trigger: GAGGACGAAGTGGAGATAAAAGTCAGTGAGCACGCAATTCCTGGGGCGCGATTTGCTCTTCCTAATGCTAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398587.7 ENST00000518882.2 ENST00000622044.1 |
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| CDS TCA 72 bp | AGCCGATATTCCGCGGTTTCTCGAGCTGGTTGGTTGTaGATCGGCTTATGTATCTATGAAGTCCTAGGCCGA | + |
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Preference number: 6 (lower is better) Translates to: SRYSAVSRAGWL*IGLCIYEVLGR Trigger: TCGGCCTAGGACTTCATAGATACATAAGCCGATTCACAACCAACCAGCTCGAGAAACCGCGGAATATCGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000398587.7 ENST00000622044.1 |
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| CDS CCA 72 bp | TGGAACACTCACGCGATATACGGACTGTGTAAACATTaGGATGTGATCATTTACATCGAGGACCACCACACG | + |
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Preference number: 6 (lower is better) Translates to: WNTHAIYGLCKH*DVIIYIEDHHT Trigger: CGTGTGGTGGTCCTCGATGTAAATGATCACATCCCAATGTTTACACAGTCCGTATATCGCGTGAGTGTTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000398587.7 ENST00000518882.2 ENST00000622044.1 |
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| CDS TCA 72 bp | TCGAGCTGGTTGGTTGTGAATCGGCTTATGTATCTATaGAGTCCTAGGCCGACTACATCCAAAATATATCAG | + |
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Preference number: 6 (lower is better) Translates to: SSWLVVNRLMYL*SPRPTTSKIYQ Trigger: CTGATATATTTTGGATGTAGTCGGCCTAGGACTTCATAGATACATAAGCCGATTCACAACCAACCAGCTCGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398587.7 ENST00000622044.1 |
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| CDS CAA 72 bp | CAACATCGTCGTGGTGGTAAAGAGACCTCCACCATCTaGGCCTTGAATTTCCATCTCATAGAATCTATATTT | + |
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Preference number: 6 (lower is better) Translates to: QHRRGGKETSTI*ALNFHLIESIF Trigger: AAATATAGATTCTATGAGATGGAAATTCAAGGCCAAGATGGTGGAGGTCTCTTTACCACCACGACGATGTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000398587.7 ENST00000518882.2 ENST00000622044.1 |
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| CDS TCA 72 bp | CACCAACAATTAGGAGGCAGAGAAATAAATCTCACCTaGTTACTTGTCGGGTCACATTTGCCTAAAATGATA | + |
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Preference number: 6 (lower is better) Translates to: HQQLGGREINLT*LLVGSHLPKMI Trigger: TATCATTTTAGGCAAATGTGACCCGACAAGTAATCAGGTGAGATTTATTTCTCTGCCTCCTAATTGTTGGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000622044.1 |
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