Pregenerated sensors for PCDHGA1 (Homo sapiens)
Ensembl gene IDs: ENSG00000204956Ensembl transcript IDs: ENST00000378105.4, ENST00000517417.3
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCAAGTAAGAAAATGTTAGAAGCTAGATCGCCGTTTCTAATGCAGTaGTCTTTCCAAACAGAGATGGCATCTCACACATACCTTCAACCC | + |
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Preference number: 1 (lower is better) Translates to: ASKKMLEARSPFLMQ*SFQTEMASHTYLQP Trigger: GGGTTGAAGGTATGTGTGAGATGCCATCTCTGTTTGGAAAGAGCACTGCATTAGAAACGGCGATCTAGCTTCTAACATTTTCTTACTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| 3UTR TCA 90 bp | AGAGATGGCATCTCACACATACCTTCAACCCAACCACCTACATTATaGTCACAGTCTCCTTTTCAGTGCAAGAACAATTATAAATATACC | + |
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Preference number: 1 (lower is better) Translates to: RDGISHIPSTQPPTL*SQSPFQCKNNYKYT Trigger: GGTATATTTATAATTGTTCTTGCACTGAAAAGGAGACTGTGATCATAATGTAGGTGGTTGGGTTGAAGGTATGTGTGAGATGCCATCTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| 3UTR-3UTR TCA 90 bp | AGGGCAGTGGCGCGATCACGGTTCGCTGAAGCCTTGACTTCCTGGGCTCAAGGGCTGTCCGGCTGGTCTTaGACTCCAGGGCTCCAAGGA | + |
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Preference number: 2 (lower is better) Translates to: RAVARSRFAEALTSWAQGLSGWS*TPGLQG Trigger: TCCTTGGAGCCCTGGAGTTCAAGACCAGCCGGACAG...CCCTTGAGCCCAGGAAGTCAAGGCTTCAGCGAACCGTGATCGCGCCACTGCCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| 3UTR-3UTR GCA 90 bp | AGGGCAGTGGCGCGATCACGGTTCGCTGAAGCCTTGACTTCCTGGGCTCAAGGGCCGTTTCTAATGCAGTaGTCTTTCCAAACAGAGATG | + |
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Preference number: 2 (lower is better) Translates to: RAVARSRFAEALTSWAQGPFLMQ*SFQTEM Trigger: CATCTCTGTTTGGAAAGAGCACTGCATTAGAAACGG...CCCTTGAGCCCAGGAAGTCAAGGCTTCAGCGAACCGTGATCGCGCCACTGCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| 3UTR-3UTR TCA 90 bp | TATTGGAGCAGAGTAAATACATCAAAGCATGGACTTACTCCCCGACCATACTTTGGTGGGAGGATCGCTTaGGCCCAGGAGGTAGTGGCT | + |
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Preference number: 2 (lower is better) Translates to: YWSRVNTSKHGLTPRPYFGGRIA*AQEVVA Trigger: AGCCACTACCTCCTGGGCTCAAGCGATCCTCCCACC...AAAGTATGGTCGGGGAGTAAGTCCATGCTTTGATGTATTTACTCTGCTCCAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| 3UTR-3UTR TCA 90 bp | CCAGAGGCAAGTAAGAAAATGTTAGAAGCTAGATCGCCGTTTCTAATGCAGTGCCAACCACCTACATTATaGTCACAGTCTCCTTTTCAG | + |
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Preference number: 2 (lower is better) Translates to: PEASKKMLEARSPFLMQCQPPTL*SQSPFQ Trigger: CTGAAAAGGAGACTGTGATCATAATGTAGGTGGTTG...GCACTGCATTAGAAACGGCGATCTAGCTTCTAACATTTTCTTACTTGCCTCTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| 3UTR-3UTR TCA 90 bp | GACTATAACTCACATGGCTTTAGACTAGCTCACCACTTTGCTTTTGCTTTCCTCACTATCACAGTGTCCTaGCAGATGACATCTACATTA | + |
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Preference number: 2 (lower is better) Translates to: DYNSHGFRLAHHFAFAFLTITVS*QMTSTL Trigger: TAATGTAGATGTCATCTGTCAGGACACTGTGATAGT...GAGGAAAGCAAAAGCAAAGTGGTGAGCTAGTCTAAAGCCATGTGAGTTATAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| 3UTR-3UTR TCA 90 bp | AGATATTTATCTAGTCTGAAGCACTTCTGTCCCTATTACATTGCTGGAGGCAGTAAATATACCTGCATATaGACGTGTAGACTCAATCGT | + |
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Preference number: 2 (lower is better) Translates to: RYLSSLKHFCPYYIAGGSKYTCI*TCRLNR Trigger: ACGATTGAGTCTACACGTTCATATGCAGGTATATTT...ACTGCCTCCAGCAATGTAATAGGGACAGAAGTGCTTCAGACTAGATAAATATCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| 3UTR-3UTR CCA 90 bp | TCATTGCTTATTTTGGATTCAGGCAGTAAGCCTGGTCCAGATATTTATCTAGTCAGCTACAAAGATACATaGGTTAGAAGAACTATCTGT | + |
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Preference number: 2 (lower is better) Translates to: SLLILDSGSKPGPDIYLVSYKDT*VRRTIC Trigger: ACAGATAGTTCTTCTAACCCATGTATCTTTGTAGCT...GACTAGATAAATATCTGGACCAGGCTTACTGCCTGAATCCAAAATAAGCAATGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| 3UTR GCA 72 bp | GCCTCTCAAATTGTTGGAAATACAGACGTGAGCCACTaGGCCCAGCTAGGCAGCATGTTAATGCATCTTTCT | + |
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Preference number: 3 (lower is better) Translates to: ASQIVGNTDVSH*AQLGSMLMHLS Trigger: AGAAAGATGCATTAACATGCTGCCTAGCTGGGCGCAGTGGCTCACGTCTGTATTTCCAACAATTTGAGAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| 3UTR TCA 72 bp | TCAGGCAGTAAGCCTGGTCCAGATATTTATCTAGTCTaGAGCACTTCTGTCCCTATTACATTGCTGGAGGCA | + |
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Preference number: 3 (lower is better) Translates to: SGSKPGPDIYLV*STSVPITLLEA Trigger: TGCCTCCAGCAATGTAATAGGGACAGAAGTGCTTCAGACTAGATAAATATCTGGACCAGGCTTACTGCCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| 3UTR GCA 72 bp | AAAATGTTAGAAGCTAGATCGCCGTTTCTAATGCAGTaGTCTTTCCAAACAGAGATGGCATCTCACACATAC | + |
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Preference number: 3 (lower is better) Translates to: KMLEARSPFLMQ*SFQTEMASHTY Trigger: GTATGTGTGAGATGCCATCTCTGTTTGGAAAGAGCACTGCATTAGAAACGGCGATCTAGCTTCTAACATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| 3UTR TCA 72 bp | ATCTCACACATACCTTCAACCCAACCACCTACATTATaGTCACAGTCTCCTTTTCAGTGCAAGAACAATTAT | + |
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Preference number: 3 (lower is better) Translates to: ISHIPSTQPPTL*SQSPFQCKNNY Trigger: ATAATTGTTCTTGCACTGAAAAGGAGACTGTGATCATAATGTAGGTGGTTGGGTTGAAGGTATGTGTGAGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | AGGGCAGTGGCGCGATCACGGTTCGCTGAAGCCTTGACTTCCTGGGCTCAAGGGCAGGCTGGAGGGCAGTaGCGCGATCACGGTTCGCTG | + |
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Preference number: 4 (lower is better) Translates to: RAVARSRFAEALTSWAQGQAGGQ*RDHGSL Trigger: CAGCGAACCGTGATCGCGCCACTGCCCTCCAGCCTG...CCCTTGAGCCCAGGAAGTCAAGGCTTCAGCGAACCGTGATCGCGCCACTGCCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| 3UTR CAA 72 bp | GGGACTACAGTCGCAGGCCGCCCTGTCCGGCTGGTCTaGAACTCCAGGGCTCCAAGGATCTTTCCGCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: GTTVAGRPVRLV*NSRAPRIFPPQ Trigger: CTGAGGCGGAAAGATCCTTGGAGCCCTGGAGTTCAAGACCAGCCGGACAGGGCGGCCTGCGACTGTAGTCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | AGGGCAGTGGCGCGATCACGGTTCGCTGAAGCCTTGACTTCCTGGGCTCAAGGGAATTCTGAGGGTCCCTaGACGGACTGGTTCACCCCC | + |
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Preference number: 4 (lower is better) Translates to: RAVARSRFAEALTSWAQGNSEGP*TDWFTP Trigger: GGGGGTGAACCAGTCCGTTCAGGGACCCTCAGAATT...CCCTTGAGCCCAGGAAGTCAAGGCTTCAGCGAACCGTGATCGCGCCACTGCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | CGTGAGCCACTGCGCCCAGCTAGGCAGCATGTTAATGCATCTTTCTTTTCCTTTCCATCTGCCAGCTCCTaGGGTTGCAGCCCTAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: REPLRPARQHVNASFFSFPSASS*GCSPRS Trigger: GGACCTAGGGCTGCAACCCCAGGAGCTGGCAGATGG...AAAGGAAAAGAAAGATGCATTAACATGCTGCCTAGCTGGGCGCAGTGGCTCACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | AGGGCAGTGGCGCGATCACGGTTCGCTGAAGCCTTGACTTCCTGGGCTCAAGGGATATGGTATTGTGCCTaGGTAAATGCTGGAGGATTG | + |
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Preference number: 4 (lower is better) Translates to: RAVARSRFAEALTSWAQGIWYCA*VNAGGL Trigger: CAATCCTCCAGCATTTACTCAGGCACAATACCATAT...CCCTTGAGCCCAGGAAGTCAAGGCTTCAGCGAACCGTGATCGCGCCACTGCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR GCA 90 bp | CGTGAGCCACTGCGCCCAGCTAGGCAGCATGTTAATGCATCTTTCTTTTCCTTTACAGACGTGAGCCACTaGGCCCAGCTAGGCAGCATG | + |
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Preference number: 4 (lower is better) Translates to: REPLRPARQHVNASFFSFTDVSH*AQLGSM Trigger: CATGCTGCCTAGCTGGGCGCAGTGGCTCACGTCTGT...AAAGGAAAAGAAAGATGCATTAACATGCTGCCTAGCTGGGCGCAGTGGCTCACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | GTGCTCTTTCCAAACAGAGATGGCATCTCACACATACCTTCAACCCAACCACCTGAAGCCTTGACTTCCTaGGCTCAAGGGATCCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: VLFPNRDGISHIPSTQPPEALTS*AQGILP Trigger: TGGGAGGATCCCTTGAGCCCAGGAAGTCAAGGCTTC...AGGTGGTTGGGTTGAAGGTATGTGTGAGATGCCATCTCTGTTTGGAAAGAGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR GCA 90 bp | CGTGAGCCACTGCGCCCAGCTAGGCAGCATGTTAATGCATCTTTCTTTTCCTTTGAAGCATCAGCCTGCTaGAGCCAGTCAGCTTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: REPLRPARQHVNASFFSFEASAC*SQSAFS Trigger: AGAAAAAGCTGACTGGCTGCAGCAGGCTGATGCTTC...AAAGGAAAAGAAAGATGCATTAACATGCTGCCTAGCTGGGCGCAGTGGCTCACG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR GCA 90 bp | TCATTGCTTATTTTGGATTCAGGCAGTAAGCCTGGTCCAGATATTTATCTAGTCGCGGACTCCGCCATCTaGCAGCTCCTGGGGTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: SLLILDSGSKPGPDIYLVADSAI*QLLGLQ Trigger: CTGCAACCCCAGGAGCTGGCAGATGGCGGAGTCCGC...GACTAGATAAATATCTGGACCAGGCTTACTGCCTGAATCCAAAATAAGCAATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | GACTATAACTCACATGGCTTTAGACTAGCTCACCACTTTGCTTTTGCTTTCCTCACCATCTCTGGATGTTaGGGCCCATCGGCTCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: DYNSHGFRLAHHFAFAFLTISGC*GPSAPC Trigger: ACAGGGAGCCGATGGGCCTCAACATCCAGAGATGGT...GAGGAAAGCAAAAGCAAAGTGGTGAGCTAGTCTAAAGCCATGTGAGTTATAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | CTTTCCAAACAGAGATGGCATCTCACACATACCTTCAACCCAACCACCTACATTCAGTGGCATTTACCATaGGCAGCTGAGTACCCAGCG | + |
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Preference number: 4 (lower is better) Translates to: LSKQRWHLTHTFNPTTYIQWHLP*AAEYPA Trigger: CGCTGGGTACTCAGCTGCTCATGGTAAATGCCACTG...AATGTAGGTGGTTGGGTTGAAGGTATGTGTGAGATGCCATCTCTGTTTGGAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | TCATTGCTTATTTTGGATTCAGGCAGTAAGCCTGGTCCAGATATTTATCTAGTCGGTGGGAGGATCGCTTaGGCCCAGGAGGTAGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: SLLILDSGSKPGPDIYLVGGRIA*AQEVVA Trigger: AGCCACTACCTCCTGGGCTCAAGCGATCCTCCCACC...GACTAGATAAATATCTGGACCAGGCTTACTGCCTGAATCCAAAATAAGCAATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | TATTGGAGCAGAGTAAATACATCAAAGCATGGACTTACTCCCCGACCATACTTTCTGTCCGGCTGGTCTTaGACTCCAGGGCTCCAAGGA | + |
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Preference number: 4 (lower is better) Translates to: YWSRVNTSKHGLTPRPYFLSGWS*TPGLQG Trigger: TCCTTGGAGCCCTGGAGTTCAAGACCAGCCGGACAG...AAAGTATGGTCGGGGAGTAAGTCCATGCTTTGATGTATTTACTCTGCTCCAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | GTGCTCTTTCCAAACAGAGATGGCATCTCACACATACCTTCAACCCAACCACCTCACTGCACTCTAGCATaGCCCCATCTCAAAACCAAA | + |
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Preference number: 4 (lower is better) Translates to: VLFPNRDGISHIPSTQPPHCTLA*PHLKTK Trigger: TTTGGTTTTGAGATGGGGTCATGCTAGAGTGCAGTG...AGGTGGTTGGGTTGAAGGTATGTGTGAGATGCCATCTCTGTTTGGAAAGAGCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | AAAATGTTAGAAGCTAGATCGCCGTTTCTAATGCAGTGCTCTTTCCAAACAGAGCTGCAGCACCATCTCTaGATGTTGAGGCCCATCGGC | + |
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Preference number: 4 (lower is better) Translates to: KMLEARSPFLMQCSFQTELQHHL*MLRPIG Trigger: GCCGATGGGCCTCAACATCCAGAGATGGTGCTGCAG...CTCTGTTTGGAAAGAGCACTGCATTAGAAACGGCGATCTAGCTTCTAACATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | CGTGAGCCACTGCGCCCAGCTAGGCAGCATGTTAATGCATCTTTCTTTTCCTTTGTCCTGATGGAAGACTaGGGAGTTGTCATTGATATC | + |
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Preference number: 4 (lower is better) Translates to: REPLRPARQHVNASFFSFVLMED*GVVIDI Trigger: GATATCAATGACAACTCCCCAGTCTTCCATCAGGAC...AAAGGAAAAGAAAGATGCATTAACATGCTGCCTAGCTGGGCGCAGTGGCTCACG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | GACTATAACTCACATGGCTTTAGACTAGCTCACCACTTTGCTTTTGCTTTCCTCGTAGCCATTGTCTCCTaGGTCCTGGTCATGCACACT | + |
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Preference number: 4 (lower is better) Translates to: DYNSHGFRLAHHFAFAFLVAIVS*VLVMHT Trigger: AGTGTGCATGACCAGGACTCAGGAGACAATGGCTAC...GAGGAAAGCAAAAGCAAAGTGGTGAGCTAGTCTAAAGCCATGTGAGTTATAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | CGTGAGCCACTGCGCCCAGCTAGGCAGCATGTTAATGCATCTTTCTTTTCCTTTCAACCACCTACATTATaGTCACAGTCTCCTTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: REPLRPARQHVNASFFSFQPPTL*SQSPFQ Trigger: CTGAAAAGGAGACTGTGATCATAATGTAGGTGGTTG...AAAGGAAAAGAAAGATGCATTAACATGCTGCCTAGCTGGGCGCAGTGGCTCACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | AAAAGCTACAAAGATACATGGGTTAGAAGAACTATCTGTAGCAAAGAGCGAACGGGTTCGCTGAAGCCTTaGCTTCCTGGGCTCAAGGGA | + |
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Preference number: 4 (lower is better) Translates to: KSYKDTWVRRTICSKERTGSLKP*LPGLKG Trigger: TCCCTTGAGCCCAGGAAGTCAAGGCTTCAGCGAACC...CGTTCGCTCTTTGCTACAGATAGTTCTTCTAACCCATGTATCTTTGTAGCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR GCA 90 bp | CCAGAGGCAAGTAAGAAAATGTTAGAAGCTAGATCGCCGTTTCTAATGCAGTGCCTGTCTAAGGGACTCTaGAGCACCATCTCTGGATGT | + |
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Preference number: 4 (lower is better) Translates to: PEASKKMLEARSPFLMQCLSKGL*STISGC Trigger: ACATCCAGAGATGGTGCTGCAGAGTCCCTTAGACAG...GCACTGCATTAGAAACGGCGATCTAGCTTCTAACATTTTCTTACTTGCCTCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR GCA 90 bp | CTTTCCAAACAGAGATGGCATCTCACACATACCTTCAACCCAACCACCTACATTTTTGTGCATTCTCATTaGTGTCCAAGTCGTGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LSKQRWHLTHTFNPTTYIFVHSH*CPSRGP Trigger: GGGCCCACGACTTGGACAGCAATGAGAATGCACAAA...AATGTAGGTGGTTGGGTTGAAGGTATGTGTGAGATGCCATCTCTGTTTGGAAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | GTGCTCTTTCCAAACAGAGATGGCATCTCACACATACCTTCAACCCAACCACCTAGGAGGAAAGTTTTCTaGAACTGCAGTGGTGACAGA | + |
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Preference number: 4 (lower is better) Translates to: VLFPNRDGISHIPSTQPPRRKVF*NCSGDR Trigger: TCTGTCACCACTGCAGTTCCAGAAAACTTTCCTCCT...AGGTGGTTGGGTTGAAGGTATGTGTGAGATGCCATCTCTGTTTGGAAAGAGCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR GCA 90 bp | CTTCTGTCCCTATTACATTGCTGGAGGCAGTTTCCTAACCTTCAATTTCTGCTTACAGAAGCATCAGCCTaGTGCAGCCAGTCAGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: LLSLLHCWRQFPNLQFLLTEASA*CSQSAF Trigger: AAAAGCTGACTGGCTGCAGCAGGCTGATGCTTCTGT...AAGCAGAAATTGAAGGTTAGGAAACTGCCTCCAGCAATGTAATAGGGACAGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | GACTATAACTCACATGGCTTTAGACTAGCTCACCACTTTGCTTTTGCTTTCCTCGTGAGGATGAGGTGGTaGACAGCTTCTTCTTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: DYNSHGFRLAHHFAFAFLVRMRW*TASSSL Trigger: CAGAGAAGAAGAAGCTGTCCACCACCTCATCCTCAC...GAGGAAAGCAAAAGCAAAGTGGTGAGCTAGTCTAAAGCCATGTGAGTTATAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | TATTGGAGCAGAGTAAATACATCAAAGCATGGACTTACTCCCCGACCATACTTTACGTTACTTCCCCATTaGCTCCCTCATCAGGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: YWSRVNTSKHGLTPRPYFTLLPH*LPHQGQ Trigger: CTGACCCTGATGAGGGAGCCAATGGGGAAGTAACGT...AAAGTATGGTCGGGGAGTAAGTCCATGCTTTGATGTATTTACTCTGCTCCAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | TATTGGAGCAGAGTAAATACATCAAAGCATGGACTTACTCCCCGACCATACTTTTGTCTCTTCCGGCACTaGGTAGTGAATATTCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: YWSRVNTSKHGLTPRPYFCLFRH*VVNIPS Trigger: GCTGGGAATATTCACTACTCAGTGCCGGAAGAGACA...AAAGTATGGTCGGGGAGTAAGTCCATGCTTTGATGTATTTACTCTGCTCCAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | TATTGGAGCAGAGTAAATACATCAAAGCATGGACTTACTCCCCGACCATACTTTTTGCCCAAAAGGCAATaGGACTCTGGTACCTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: YWSRVNTSKHGLTPRPYFLPKRQ*DSGTWS Trigger: ACTCCAGGTACCAGAGTCTCATTGCCTTTTGGGCAA...AAAGTATGGTCGGGGAGTAAGTCCATGCTTTGATGTATTTACTCTGCTCCAATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | CTTTCCAAACAGAGATGGCATCTCACACATACCTTCAACCCAACCACCTACATTCTGGGGAGTTGTCATTaGTATCTGTCACTAGTAGTG | + |
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Preference number: 4 (lower is better) Translates to: LSKQRWHLTHTFNPTTYILGSCH*YLSLVV Trigger: CACTACTAGTGACAGATATCAATGACAACTCCCCAG...AATGTAGGTGGTTGGGTTGAAGGTATGTGTGAGATGCCATCTCTGTTTGGAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | GTGCTCTTTCCAAACAGAGATGGCATCTCACACATACCTTCAACCCAACCACCTACTATCACAGTGTCCTaGCAGATGACATCTACATTA | + |
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Preference number: 4 (lower is better) Translates to: VLFPNRDGISHIPSTQPPTITVS*QMTSTL Trigger: TAATGTAGATGTCATCTGTCAGGACACTGTGATAGT...AGGTGGTTGGGTTGAAGGTATGTGTGAGATGCCATCTCTGTTTGGAAAGAGCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | TCATTGCTTATTTTGGATTCAGGCAGTAAGCCTGGTCCAGATATTTATCTAGTCTTGCTGTCCAAGTCGTaGGCCCTCACAGAGAAGATG | + |
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Preference number: 4 (lower is better) Translates to: SLLILDSGSKPGPDIYLVLLSKS*ALTEKM Trigger: CATCTTCTCTGTGAGGGCCCACGACTTGGACAGCAA...GACTAGATAAATATCTGGACCAGGCTTACTGCCTGAATCCAAAATAAGCAATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | AATATTGGTGAGCCTTTTCTAATCAAACCTTTTAGCCCAGAGGCAAGTAAGAAATTTACCATGAGCAGCTaGGTACCCAGCGGCACGTTT | + |
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Preference number: 4 (lower is better) Translates to: NIGEPFLIKPFSPEASKKFTMSS*VPSGTF Trigger: AAACGTGCCGCTGGGTACTCAGCTGCTCATGGTAAA...TTTCTTACTTGCCTCTGGGCTAAAAGGTTTGATTAGAAAAGGCTCACCAATATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR GCA 90 bp | CTTTCCAAACAGAGATGGCATCTCACACATACCTTCAACCCAACCACCTACATTAAAGTTTTCTGGAACTaGAGTGGTGACAGAGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: LSKQRWHLTHTFNPTTYIKVFWN*SGDRGD Trigger: ATCACCTCTGTCACCACTGCAGTTCCAGAAAACTTT...AATGTAGGTGGTTGGGTTGAAGGTATGTGTGAGATGCCATCTCTGTTTGGAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | GCTAGATCGCCGTTTCTAATGCAGTGCTCTTTCCAAACAGAGATGGCATCTCACTCCTCTAACTGGAATTaGGGAGTGTTGTCATTAATA | + |
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Preference number: 4 (lower is better) Translates to: ARSPFLMQCSFQTEMASHSSNWN*GVLSLI Trigger: TATTAATGACAACACTCCCCAATTCCAGTTAGAGGA...GTGAGATGCCATCTCTGTTTGGAAAGAGCACTGCATTAGAAACGGCGATCTAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | TCATTGCTTATTTTGGATTCAGGCAGTAAGCCTGGTCCAGATATTTATCTAGTCGCTGTGAGGATGAGGTaGTGGACAGCTTCTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SLLILDSGSKPGPDIYLVAVRMR*WTASSS Trigger: AGAAGAAGAAGCTGTCCACCACCTCATCCTCACAGC...GACTAGATAAATATCTGGACCAGGCTTACTGCCTGAATCCAAAATAAGCAATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | CTTTCCAAACAGAGATGGCATCTCACACATACCTTCAACCCAACCACCTACATTTCCCTATTACATTGCTaGAGGCAGTTTCCTAACCTT | + |
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Preference number: 4 (lower is better) Translates to: LSKQRWHLTHTFNPTTYISLLHC*RQFPNL Trigger: AAGGTTAGGAAACTGCCTCCAGCAATGTAATAGGGA...AATGTAGGTGGTTGGGTTGAAGGTATGTGTGAGATGCCATCTCTGTTTGGAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | CTTTCCAAACAGAGATGGCATCTCACACATACCTTCAACCCAACCACCTACATTCTATTAGGGAGTAAGTaGTTTGTGCATTCTCATTGC | + |
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Preference number: 4 (lower is better) Translates to: LSKQRWHLTHTFNPTTYILLGSK*FVHSHC Trigger: GCAATGAGAATGCACAAATCACTTACTCCCTAATAG...AATGTAGGTGGTTGGGTTGAAGGTATGTGTGAGATGCCATCTCTGTTTGGAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR GCA 90 bp | AAAATGTTAGAAGCTAGATCGCCGTTTCTAATGCAGTGCTCTTTCCAAACAGAGCCTGAGTCCTGGTCATaGACACTGATAAGAGCAATT | + |
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Preference number: 4 (lower is better) Translates to: KMLEARSPFLMQCSFQTEPESWS*TLIRAI Trigger: AATTGCTCTTATCAGTGTGCATGACCAGGACTCAGG...CTCTGTTTGGAAAGAGCACTGCATTAGAAACGGCGATCTAGCTTCTAACATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR GCA 90 bp | AGATATTTATCTAGTCTGAAGCACTTCTGTCCCTATTACATTGCTGGAGGCAGTGCTGAAGGGCCTCATTaGTTATTTTGGATTCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: RYLSSLKHFCPYYIAGGSAEGPH*LFWIQA Trigger: TGCCTGAATCCAAAATAAGCAATGAGGCCCTTCAGC...ACTGCCTCCAGCAATGTAATAGGGACAGAAGTGCTTCAGACTAGATAAATATCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | AGATATTTATCTAGTCTGAAGCACTTCTGTCCCTATTACATTGCTGGAGGCAGTTTGTCTCCTGAGTCCTaGTCATGCACACTGATAAGA | + |
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Preference number: 4 (lower is better) Translates to: RYLSSLKHFCPYYIAGGSLSPES*SCTLIR Trigger: TCTTATCAGTGTGCATGACCAGGACTCAGGAGACAA...ACTGCCTCCAGCAATGTAATAGGGACAGAAGTGCTTCAGACTAGATAAATATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | AAAATGTTAGAAGCTAGATCGCCGTTTCTAATGCAGTGCTCTTTCCAAACAGAGTCCTTTTTAACCAGCTaGAGGGCCTCATTGCTTATT | + |
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Preference number: 4 (lower is better) Translates to: KMLEARSPFLMQCSFQTESFLTS*RASLLI Trigger: AATAAGCAATGAGGCCCTTCAGCTGGTTAAAAAGGA...CTCTGTTTGGAAAGAGCACTGCATTAGAAACGGCGATCTAGCTTCTAACATTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | GACTATAACTCACATGGCTTTAGACTAGCTCACCACTTTGCTTTTGCTTTCCTCTCTAAACGAAATATTTaGGCCACTCTGTGGTCTACA | + |
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Preference number: 4 (lower is better) Translates to: DYNSHGFRLAHHFAFAFLSKRNI*ATLWST Trigger: TGTAGACCACAGAGTGGCCCAAATATTTCGTTTAGA...GAGGAAAGCAAAAGCAAAGTGGTGAGCTAGTCTAAAGCCATGTGAGTTATAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | TATTGGAGCAGAGTAAATACATCAAAGCATGGACTTACTCCCCGACCATACTTTCTTTCCAAACAGAGATaGCATCTCACACATACCTTC | + |
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Preference number: 4 (lower is better) Translates to: YWSRVNTSKHGLTPRPYFLSKQR*HLTHTF Trigger: GAAGGTATGTGTGAGATGCCATCTCTGTTTGGAAAG...AAAGTATGGTCGGGGAGTAAGTCCATGCTTTGATGTATTTACTCTGCTCCAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | AGATATTTATCTAGTCTGAAGCACTTCTGTCCCTATTACATTGCTGGAGGCAGTCCTCATTGCTTATTTTaGATTCAGGCAGTAAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: RYLSSLKHFCPYYIAGGSPHCLF*IQAVSL Trigger: CAGGCTTACTGCCTGAATCCAAAATAAGCAATGAGG...ACTGCCTCCAGCAATGTAATAGGGACAGAAGTGCTTCAGACTAGATAAATATCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | AATATTGGTGAGCCTTTTCTAATCAAACCTTTTAGCCCAGAGGCAAGTAAGAAACTGTGGTCTACATTGTaGAAGGAGTACGTTACTTCC | + |
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Preference number: 4 (lower is better) Translates to: NIGEPFLIKPFSPEASKKLWSTL*KEYVTS Trigger: GGAAGTAACGTACTCCTTTCACAATGTAGACCACAG...TTTCTTACTTGCCTCTGGGCTAAAAGGTTTGATTAGAAAAGGCTCACCAATATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | AATATTGGTGAGCCTTTTCTAATCAAACCTTTTAGCCCAGAGGCAAGTAAGAAAGCACCATCCTGGGCTTaGACTTCCATTGAATACATT | + |
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Preference number: 4 (lower is better) Translates to: NIGEPFLIKPFSPEASKKAPSWA*TSIEYI Trigger: AATGTATTCAATGGAAGTTCAAGCCCAGGATGGTGC...TTTCTTACTTGCCTCTGGGCTAAAAGGTTTGATTAGAAAAGGCTCACCAATATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | GACTATAACTCACATGGCTTTAGACTAGCTCACCACTTTGCTTTTGCTTTCCTCACTAGTAGTGAAATGTaGGTTTCAGTAGATAGAGCT | + |
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Preference number: 4 (lower is better) Translates to: DYNSHGFRLAHHFAFAFLTSSEM*VSVDRA Trigger: AGCTCTATCTACTGAAACTCACATTTCACTACTAGT...GAGGAAAGCAAAAGCAAAGTGGTGAGCTAGTCTAAAGCCATGTGAGTTATAGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | AAAAGCTACAAAGATACATGGGTTAGAAGAACTATCTGTAGCAAAGAGCGAACGAAGGCAATGAGACTCTaGTACCTGGAGTCGTTATTT | + |
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Preference number: 4 (lower is better) Translates to: KSYKDTWVRRTICSKERTKAMRL*YLESLF Trigger: AAATAACGACTCCAGGTACCAGAGTCTCATTGCCTT...CGTTCGCTCTTTGCTACAGATAGTTCTTCTAACCCATGTATCTTTGTAGCTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | AAAAGCTACAAAGATACATGGGTTAGAAGAACTATCTGTAGCAAAGAGCGAACGTCTTCAAGTAAAGACTaGGGTGCTGATAGAAAACCC | + |
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Preference number: 4 (lower is better) Translates to: KSYKDTWVRRTICSKERTSSSKD*GADRKP Trigger: GGGTTTTCTATCAGCACCCCAGTCTTTACTTGAAGA...CGTTCGCTCTTTGCTACAGATAGTTCTTCTAACCCATGTATCTTTGTAGCTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR GCA 90 bp | AGATATTTATCTAGTCTGAAGCACTTCTGTCCCTATTACATTGCTGGAGGCAGTACTAGCTCACCACTTTaGTTTTGCTTTCCTCTTATA | + |
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Preference number: 4 (lower is better) Translates to: RYLSSLKHFCPYYIAGGSTSSPL*FCFPLI Trigger: TATAAGAGGAAAGCAAAAGCAAAGTGGTGAGCTAGT...ACTGCCTCCAGCAATGTAATAGGGACAGAAGTGCTTCAGACTAGATAAATATCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CCA 90 bp | AATATTGGTGAGCCTTTTCTAATCAAACCTTTTAGCCCAGAGGCAAGTAAGAAAAGAGCTGGAGTTCCTTaGTCTATTGCTGTTATTGTG | + |
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Preference number: 4 (lower is better) Translates to: NIGEPFLIKPFSPEASKKRAGVP*SIAVIV Trigger: CACAATAACAGCAATAGACCAAGGAACTCCAGCTCT...TTTCTTACTTGCCTCTGGGCTAAAAGGTTTGATTAGAAAAGGCTCACCAATATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR TCA 90 bp | TCATTGCTTATTTTGGATTCAGGCAGTAAGCCTGGTCCAGATATTTATCTAGTCAAATATACCTGCATATaGACGTGTAGACTCAATCGT | + |
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Preference number: 4 (lower is better) Translates to: SLLILDSGSKPGPDIYLVKYTCI*TCRLNR Trigger: ACGATTGAGTCTACACGTTCATATGCAGGTATATTT...GACTAGATAAATATCTGGACCAGGCTTACTGCCTGAATCCAAAATAAGCAATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR GCA 90 bp | AAAAGCTACAAAGATACATGGGTTAGAAGAACTATCTGTAGCAAAGAGCGAACGATTTATATGGTATTGTaGCTGAGTAAATGCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: KSYKDTWVRRTICSKERTIYMVL*LSKCWR Trigger: CCTCCAGCATTTACTCAGGCACAATACCATATAAAT...CGTTCGCTCTTTGCTACAGATAGTTCTTCTAACCCATGTATCTTTGTAGCTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR GCA 90 bp | AATATTGGTGAGCCTTTTCTAATCAAACCTTTTAGCCCAGAGGCAAGTAAGAAAGGAGTAAGTGATTTGTaGATTCTCATTGCTGTCCAA | + |
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Preference number: 4 (lower is better) Translates to: NIGEPFLIKPFSPEASKKGVSDL*ILIAVQ Trigger: TTGGACAGCAATGAGAATGCACAAATCACTTACTCC...TTTCTTACTTGCCTCTGGGCTAAAAGGTTTGATTAGAAAAGGCTCACCAATATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CAA 90 bp | CTTTCCAAACAGAGATGGCATCTCACACATACCTTCAACCCAACCACCTACATTCACCATCTCTGGATGTaGAGGCCCATCGGCTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: LSKQRWHLTHTFNPTTYIHHLWM*RPIGSL Trigger: CAGGGAGCCGATGGGCCTCAACATCCAGAGATGGTG...AATGTAGGTGGTTGGGTTGAAGGTATGTGTGAGATGCCATCTCTGTTTGGAAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CAA 90 bp | GCTAGATCGCCGTTTCTAATGCAGTGCTCTTTCCAAACAGAGATGGCATCTCACATTTGTGCATTCTCATaGCTGTCCAAGTCGTGGGCC | + |
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Preference number: 5 (lower is better) Translates to: ARSPFLMQCSFQTEMASHICAFS*LSKSWA Trigger: GGCCCACGACTTGGACAGCAATGAGAATGCACAAAT...GTGAGATGCCATCTCTGTTTGGAAAGAGCACTGCATTAGAAACGGCGATCTAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS TCA 90 bp | GAAAGACACAGAAGCATCAGCCTGCTGCAGCCAGTCAGCTTTTTCTaGATCTTCATGGCTCTCTCACTTCGTAGTTTTCTTCCAGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: ERHRSISLLQPVSFF*IFMALSLRSFLPVQ Trigger: CTGGACTGGAAGAAAACTACGAAGTGAGAGAGCCATGAAGATTCAGAAAAAGCTGACTGGCTGCAGCAGGCTGATGCTTCTGTGTCTTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000378105.4 ENST00000517417.3 |
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| CDS-3UTR CAA 90 bp | CTTTCCAAACAGAGATGGCATCTCACACATACCTTCAACCCAACCACCTACATTTACGTTACTTCCCCATaGGCTCCCTCATCAGGGTCA | + |
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Preference number: 5 (lower is better) Translates to: LSKQRWHLTHTFNPTTYIYVTSP*APSSGS Trigger: TGACCCTGATGAGGGAGCCAATGGGGAAGTAACGTA...AATGTAGGTGGTTGGGTTGAAGGTATGTGTGAGATGCCATCTCTGTTTGGAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CAA 90 bp | AAAAGCTACAAAGATACATGGGTTAGAAGAACTATCTGTAGCAAAGAGCGAACGCGGTTCGCTGAAGCCTaGACTTCCTGGGCTCAAGGG | + |
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Preference number: 5 (lower is better) Translates to: KSYKDTWVRRTICSKERTRFAEA*TSWAQG Trigger: CCCTTGAGCCCAGGAAGTCAAGGCTTCAGCGAACCG...CGTTCGCTCTTTGCTACAGATAGTTCTTCTAACCCATGTATCTTTGTAGCTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CAA 90 bp | CCAGAGGCAAGTAAGAAAATGTTAGAAGCTAGATCGCCGTTTCTAATGCAGTGCGACATTTATATGGTATaGTGCCTGAGTAAATGCTGG | + |
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Preference number: 5 (lower is better) Translates to: PEASKKMLEARSPFLMQCDIYMV*CLSKCW Trigger: CCAGCATTTACTCAGGCACAATACCATATAAATGTC...GCACTGCATTAGAAACGGCGATCTAGCTTCTAACATTTTCTTACTTGCCTCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CAA 90 bp | TATTGGAGCAGAGTAAATACATCAAAGCATGGACTTACTCCCCGACCATACTTTGCTGTTATTGTGATGTaGTACCCAGAGATAAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: YWSRVNTSKHGLTPRPYFAVIVM*YPEISS Trigger: AGAACTTATCTCTGGGTACAACATCACAATAACAGC...AAAGTATGGTCGGGGAGTAAGTCCATGCTTTGATGTATTTACTCTGCTCCAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS-3UTR CAA 90 bp | AAAAGCTACAAAGATACATGGGTTAGAAGAACTATCTGTAGCAAAGAGCGAACGGAAAATGGTTCCTTTTaGTCTTCAAGTAAAGACTGG | + |
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Preference number: 5 (lower is better) Translates to: KSYKDTWVRRTICSKERTENGSF*SSSKDW Trigger: CCAGTCTTTACTTGAAGACAAAAAGGAACCATTTTC...CGTTCGCTCTTTGCTACAGATAGTTCTTCTAACCCATGTATCTTTGTAGCTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000378105.4 |
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| CDS GCA 72 bp | GCAGCTCCAGAGAAAGACACAGAAGCATCAGCCTGCTaGAGCCAGTCAGCTTTTTCTGAATCTTCATGGCTC | + |
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Preference number: 6 (lower is better) Translates to: AAPEKDTEASAC*SQSAFSESSWL Trigger: GAGCCATGAAGATTCAGAAAAAGCTGACTGGCTGCAGCAGGCTGATGCTTCTGTGTCTTTCTCTGGAGCTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000378105.4 ENST00000517417.3 |
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| CDS CCA 72 bp | CTGGAGAGTCATCCAGAAGTAGGATTTAGGCAGTCTTaGACAGTCAGTTTTCAATCTGGCGGTTATGGAGGT | + |
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Preference number: 6 (lower is better) Translates to: LESHPEVGFRQS*TVSFQSGGYGG Trigger: ACCTCCATAACCGCCAGATTGAAAACTGACTGTCCAAGACTGCCTAAATCCTACTTCTGGATGACTCTCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517417.3 |
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| CDS TCA 72 bp | GTTCATACCCACATCAAGGTCTTGCCCAAAAGGCAATaGGACTCTGGTACCTGGAGTCGTTATTTCATTCAT | + |
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Preference number: 6 (lower is better) Translates to: VHTHIKVLPKRQ*DSGTWSRYFIH Trigger: ATGAATGAAATAACGACTCCAGGTACCAGAGTCTCATTGCCTTTTGGGCAAGACCTTGATGTGGGTATGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000378105.4 ENST00000517417.3 |
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| CDS TCA 72 bp | TCCAGGAATGAAACATGTGGTGTAGCCATTGTCTCCTaGGTCCTGGTCATGCACACTGATAAGAGCAATTAT | + |
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Preference number: 6 (lower is better) Translates to: SRNETCGVAIVS*VLVMHTDKSNY Trigger: ATAATTGCTCTTATCAGTGTGCATGACCAGGACTCAGGAGACAATGGCTACACCACATGTTTCATTCCTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000378105.4 ENST00000517417.3 |
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