Pregenerated sensors for PCDHB16 (Homo sapiens)
Ensembl gene IDs: ENSG00000272674Ensembl transcript IDs: ENST00000609684.3, ENST00000625044.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGTCCACCACCTTTGTCTCCGATTGTGCATCCATCCAATCTCCATTaGTTTTTCTTGAAAAGTTGGTTCACAGAAGCTTCATGTATCCCC | + |
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Preference number: 5 (lower is better) Translates to: RPPPLSPIVHPSNLH*FFLKSWFTEASCIP Trigger: GGGGATACATGAAGCTTCTGTGAACCAACTTTTCAAGAAAAAGCAATGGAGATTGGATGGATGCACAATCGGAGACAAAGGTGGTGGACG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000625044.1 |
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| CDS GCA 90 bp | AAGGACTTGCCTTTGTCTCCGATTGTGCATCCATCCAATCTCCATTaGTTTTTCTTGAAAAGTTGGTTCACAGAAGCTTCATGTATCCCC | + |
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Preference number: 5 (lower is better) Translates to: KDLPLSPIVHPSNLH*FFLKSWFTEASCIP Trigger: GGGGATACATGAAGCTTCTGTGAACCAACTTTTCAAGAAAAAGCAATGGAGATTGGATGGATGCACAATCGGAGACAAAGGCAAGTCCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000609684.3 |
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| CDS CCA 72 bp | CGGTGTCTTAAAGAGGTTTCACACTCACGTTCGCTCTaGCTCAGCTATTCTTCTGCTTCCAGGCTTTGGGAA | + |
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Preference number: 6 (lower is better) Translates to: RCLKEVSHSRSL*LSYSSASRLWE Trigger: TTCCCAAAGCCTGGAAGCAGAAGAATAGCTGAGCCAGAGCGAACGTGAGTGTGAAACCTCTTTAAGACACCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609684.3 |
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| CDS CAA 72 bp | AGCTTCATGTATCCCCAGGATCCTAGTAGAACTGTTTaGCAGTCCAGAATGTCAGAACCAAGCAGCCCAACG | + |
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Preference number: 6 (lower is better) Translates to: SFMYPQDPSRTV*QSRMSEPSSPT Trigger: CGTTGGGCTGCTTGGTTCTGACATTCTGGACTGCAAAACAGTTCTACTAGGATCCTGGGGATACATGAAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000609684.3 ENST00000625044.1 |
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| CDS CAA 90 bp | ACGTCCACCACCTTTGTCTCCGATTGTGCATCCATCCAATCTCCATaGCTTTTTCTTGAAAAGTTGGTTCACAGAAGCTTCATGTATCCC | + |
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Preference number: 6 (lower is better) Translates to: TSTTFVSDCASIQSP*LFLEKLVHRSFMYP Trigger: GGGATACATGAAGCTTCTGTGAACCAACTTTTCAAGAAAAAGCAATGGAGATTGGATGGATGCACAATCGGAGACAAAGGTGGTGGACGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000625044.1 |
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| CDS CAA 90 bp | CAAGGACTTGCCTTTGTCTCCGATTGTGCATCCATCCAATCTCCATaGCTTTTTCTTGAAAAGTTGGTTCACAGAAGCTTCATGTATCCC | + |
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Preference number: 6 (lower is better) Translates to: QGLAFVSDCASIQSP*LFLEKLVHRSFMYP Trigger: GGGATACATGAAGCTTCTGTGAACCAACTTTTCAAGAAAAAGCAATGGAGATTGGATGGATGCACAATCGGAGACAAAGGCAAGTCCTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000609684.3 |
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| CDS CAA 72 bp | GCCTTTGTCTCCGATTGTGCATCCATCCAATCTCCATaGCTTTTTCTTGAAAAGTTGGTTCACAGAAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: AFVSDCASIQSP*LFLEKLVHRSF Trigger: GAAGCTTCTGTGAACCAACTTTTCAAGAAAAAGCAATGGAGATTGGATGGATGCACAATCGGAGACAAAGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000609684.3 |
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| CDS GCA 72 bp | CCTTTGTCTCCGATTGTGCATCCATCCAATCTCCATTaGTTTTTCTTGAAAAGTTGGTTCACAGAAGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: PLSPIVHPSNLH*FFLKSWFTEAS Trigger: TGAAGCTTCTGTGAACCAACTTTTCAAGAAAAAGCAATGGAGATTGGATGGATGCACAATCGGAGACAAAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000609684.3 ENST00000625044.1 |
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| CDS CAA 72 bp | ACCTTTGTCTCCGATTGTGCATCCATCCAATCTCCATaGCTTTTTCTTGAAAAGTTGGTTCACAGAAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: TFVSDCASIQSP*LFLEKLVHRSF Trigger: GAAGCTTCTGTGAACCAACTTTTCAAGAAAAAGCAATGGAGATTGGATGGATGCACAATCGGAGACAAAGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000625044.1 |
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