Pregenerated sensors for PCDHB13 (Homo sapiens)
Ensembl gene IDs: ENSG00000187372Ensembl transcript IDs: ENST00000341948.6
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACATTAGGTTGTCTTAGATATGCTATTAAAAGAGATTGCACTTCTTaGCATTATCAACTGACTAATACCCAGTCCCTCTACAATGTTAAG | + |
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Preference number: 1 (lower is better) Translates to: TLGCLRYAIKRDCTS*HYQLTNTQSLYNVK Trigger: CTTAACATTGTAGAGGGACTGGGTATTAGTCAGTTGATAATGCCAAGAAGTGCAATCTCTTTTAATAGCATATCTAAGACAACCTAATGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR TCA 90 bp | ATAACTCCCACCTTTGGAGGCCAGAAGTTCAACAGCCTGGGCGACATGATGAGAGCACTCCAGCCTGGGTaGCAGAACAGGACCTTGTCT | + |
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Preference number: 2 (lower is better) Translates to: ITPTFGGQKFNSLGDMMRALQPG*QNRTLS Trigger: AGACAAGGTCCTGTTCTGTCACCCAGGCTGGAGTGC...TCTCATCATGTCGCCCAGGCTGTTGAACTTCTGGCCTCCAAAGGTGGGAGTTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR TCA 90 bp | ATAACTCCCACCTTTGGAGGCCAGAAGTTCAACAGCCTGGGCGACATGATGAGACTTGGCATTATCAACTaGCTAATACCCAGTCCCTCT | + |
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Preference number: 2 (lower is better) Translates to: ITPTFGGQKFNSLGDMMRLGIIN*LIPSPS Trigger: AGAGGGACTGGGTATTAGTCAGTTGATAATGCCAAG...TCTCATCATGTCGCCCAGGCTGTTGAACTTCTGGCCTCCAAAGGTGGGAGTTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR TCA 90 bp | CAGCGAGATTTTCTGTCTGAGTTGTTTGAACTACTCTTTCCCACTCCACCAGTAGAGTGGAGATCACAGTaGGTGGAGATCACACCACTG | + |
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Preference number: 2 (lower is better) Translates to: QRDFLSELFELLFPTPPVEWRSQ*VEITPL Trigger: CAGTGGTGTGATCTCCACTCACTGTGATCTCCACTC...TACTGGTGGAGTGGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATCTCGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR TCA 90 bp | CAGCGAGATTTTCTGTCTGAGTTGTTTGAACTACTCTTTCCCACTCCACCAGTAAGGTGGAGGTTGCAGTaGGTGGAGATCACAGTGAGT | + |
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Preference number: 2 (lower is better) Translates to: QRDFLSELFELLFPTPPVRWRLQ*VEITVS Trigger: ACTCACTGTGATCTCCACTCACTGCAACCTCCACCT...TACTGGTGGAGTGGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATCTCGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR GCA 90 bp | GAGAAGCAACTGAGTCTAGTCTGTGGCACTGGAAGTAGTCATTTTGCTCATCCCTTGGGCACAGGCATCTaGATTCAACTAGATTGCACT | + |
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Preference number: 2 (lower is better) Translates to: EKQLSLVCGTGSSHFAHPLGTGI*IQLDCT Trigger: AGTGCAATCTAGTTGAATGCAGATGCCTGTGCCCAA...GGGATGAGCAAAATGACTACTTCCAGTGCCACAGACTAGACTCAGTTGCTTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR CCA 90 bp | CAGCGAGATTTTCTGTCTGAGTTGTTTGAACTACTCTTTCCCACTCCACCAGTAGGAGATCACAGTGAGTaGAGATCACACCACTGCACT | + |
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Preference number: 2 (lower is better) Translates to: QRDFLSELFELLFPTPPVGDHSE*RSHHCT Trigger: AGTGCAGTGGTGTGATCTCCACTCACTGTGATCTCC...TACTGGTGGAGTGGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATCTCGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR TCA 90 bp | CAGCGAGATTTTCTGTCTGAGTTGTTTGAACTACTCTTTCCCACTCCACCAGTATCTTCAAGAAGTAGTTaGGGCCAGGTGCTCATACCT | + |
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Preference number: 2 (lower is better) Translates to: QRDFLSELFELLFPTPPVSSRSS*GQVLIP Trigger: AGGTATGAGCACCTGGCCTCAACTACTTCTTGAAGA...TACTGGTGGAGTGGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATCTCGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR TCA 90 bp | GAGAAGCAACTGAGTCTAGTCTGTGGCACTGGAAGTAGTCATTTTGCTCATCCCAAGAGTGATTTAACATaGGACAAAGCTACTCCCCTA | + |
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Preference number: 2 (lower is better) Translates to: EKQLSLVCGTGSSHFAHPKSDLT*DKATPL Trigger: TAGGGGAGTAGCTTTGTCTCATGTTAAATCACTCTT...GGGATGAGCAAAATGACTACTTCCAGTGCCACAGACTAGACTCAGTTGCTTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR CCA 90 bp | ATAACTCCCACCTTTGGAGGCCAGAAGTTCAACAGCCTGGGCGACATGATGAGAAGAGATTGCACTTCTTaGCATTATCAACTGACTAAT | + |
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Preference number: 2 (lower is better) Translates to: ITPTFGGQKFNSLGDMMRRDCTS*HYQLTN Trigger: ATTAGTCAGTTGATAATGCCAAGAAGTGCAATCTCT...TCTCATCATGTCGCCCAGGCTGTTGAACTTCTGGCCTCCAAAGGTGGGAGTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR TCA 90 bp | CAGCGAGATTTTCTGTCTGAGTTGTTTGAACTACTCTTTCCCACTCCACCAGTAAAGCATAATAGTGGGTaGAGTTCAGCTAAAGATAGG | + |
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Preference number: 2 (lower is better) Translates to: QRDFLSELFELLFPTPPVKHNSG*SSAKDR Trigger: CCTATCTTTAGCTGAACTTCACCCACTATTATGCTT...TACTGGTGGAGTGGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATCTCGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR CCA 90 bp | CAGCGAGATTTTCTGTCTGAGTTGTTTGAACTACTCTTTCCCACTCCACCAGTAGGGGGAAATAAACATTaGCATGGAAATGCCACAAAA | + |
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Preference number: 2 (lower is better) Translates to: QRDFLSELFELLFPTPPVGGNKH*HGNATK Trigger: TTTTGTGGCATTTCCATGCCAATGTTTATTTCCCCC...TACTGGTGGAGTGGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATCTCGCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR CCA 90 bp | GAGAAGCAACTGAGTCTAGTCTGTGGCACTGGAAGTAGTCATTTTGCTCATCCCGAAATGCTGGAAAATTaGAATCACTTCCAAATTGCT | + |
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Preference number: 2 (lower is better) Translates to: EKQLSLVCGTGSSHFAHPEMLEN*NHFQIA Trigger: AGCAATTTGGAAGTGATTCCAATTTTCCAGCATTTC...GGGATGAGCAAAATGACTACTTCCAGTGCCACAGACTAGACTCAGTTGCTTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR CCA 90 bp | GAGAAGCAACTGAGTCTAGTCTGTGGCACTGGAAGTAGTCATTTTGCTCATCCCCAAATGAAGAAATGCTaGAAAATTGGAATCACTTCC | + |
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Preference number: 2 (lower is better) Translates to: EKQLSLVCGTGSSHFAHPQMKKC*KIGITS Trigger: GGAAGTGATTCCAATTTTCCAGCATTTCTTCATTTG...GGGATGAGCAAAATGACTACTTCCAGTGCCACAGACTAGACTCAGTTGCTTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR GCA 90 bp | CAGCGAGATTTTCTGTCTGAGTTGTTTGAACTACTCTTTCCCACTCCACCAGTAAATGTGATTTGGTATTaGTCTTTAGGGAGGCAAATT | + |
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Preference number: 2 (lower is better) Translates to: QRDFLSELFELLFPTPPVNVIWY*SLGRQI Trigger: AATTTGCCTCCCTAAAGAGCAATACCAAATCACATT...TACTGGTGGAGTGGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATCTCGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR CAA 90 bp | TACACATTAACACACAACTCCAATTTATGCTATATGAATTATTATTaGGGCACAGGCATCTGCATTCAACTAGATTGCACTAGAGCTTTG | + |
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Preference number: 2 (lower is better) Translates to: YTLTHNSNLCYMNYY*GTGICIQLDCTRAL Trigger: CAAAGCTCTAGTGCAATCTAGTTGAATGCAGATGCCTGTGCCCAAATAATAATTCATATAGCATAAATTGGAGTTGTGTGTTAATGTGTA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR CAA 90 bp | GAGAAGCAACTGAGTCTAGTCTGTGGCACTGGAAGTAGTCATTTTGCTCATCCCGGGTTAAAGAATGAATaGTCACCTTTTAAGAACCAG | + |
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Preference number: 3 (lower is better) Translates to: EKQLSLVCGTGSSHFAHPGLKNE*SPFKNQ Trigger: CTGGTTCTTAAAAGGTGACAATTCATTCTTTAACCC...GGGATGAGCAAAATGACTACTTCCAGTGCCACAGACTAGACTCAGTTGCTTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR CAA 90 bp | CAGCGAGATTTTCTGTCTGAGTTGTTTGAACTACTCTTTCCCACTCCACCAGTACTGGAAGTAGTCATTTaGCTCATCCCCATGAATTTC | + |
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Preference number: 3 (lower is better) Translates to: QRDFLSELFELLFPTPPVLEVVI*LIPMNF Trigger: GAAATTCATGGGGATGAGCAAAATGACTACTTCCAG...TACTGGTGGAGTGGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATCTCGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR CAA 90 bp | CAGCGAGATTTTCTGTCTGAGTTGTTTGAACTACTCTTTCCCACTCCACCAGTATCTCCTCCTCCAACCTaGAAGTCTTTTTCTTACATA | + |
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Preference number: 3 (lower is better) Translates to: QRDFLSELFELLFPTPPVSPPPT*KSFSYI Trigger: TATGTAAGAAAAAGACTTCAAGGTTGGAGGAGGAGA...TACTGGTGGAGTGGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATCTCGCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR-3UTR CAA 90 bp | CAGCGAGATTTTCTGTCTGAGTTGTTTGAACTACTCTTTCCCACTCCACCAGTAAGAAATGCTGGAAAATaGGAATCACTTCCAAATTGC | + |
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Preference number: 3 (lower is better) Translates to: QRDFLSELFELLFPTPPVRNAGK*ESLPNC Trigger: GCAATTTGGAAGTGATTCCAATTTTCCAGCATTTCT...TACTGGTGGAGTGGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATCTCGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR TCA 72 bp | GTGTGTCAGATCCTTAAAGGTAAGAGTGATTTAACATaGGACAAAGCTACTCCCCTACAATGCTTTGAAAAT | + |
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Preference number: 3 (lower is better) Translates to: VCQILKGKSDLT*DKATPLQCFEN Trigger: ATTTTCAAAGCATTGTAGGGGAGTAGCTTTGTCTCATGTTAAATCACTCTTACCTTTAAGGATCTGACACAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR GCA 72 bp | ACATTAGGTTGTCTTAGATATGCTATTAAAAGAGATTaGACTTCTTGGCATTATCAACTGACTAATACCCAG | + |
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Preference number: 3 (lower is better) Translates to: TLGCLRYAIKRD*TSWHYQLTNTQ Trigger: CTGGGTATTAGTCAGTTGATAATGCCAAGAAGTGCAATCTCTTTTAATAGCATATCTAAGACAACCTAATGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR TCA 90 bp | ATAACTCCCACCTTTGGAGGCCAGAAGTTCAACAGCCTGGGCGACATGATGAGAGAGTGGAGATCACAGTaGGTGGAGATCACACCACTG | + |
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Preference number: 4 (lower is better) Translates to: ITPTFGGQKFNSLGDMMREWRSQ*VEITPL Trigger: CAGTGGTGTGATCTCCACTCACTGTGATCTCCACTC...TCTCATCATGTCGCCCAGGCTGTTGAACTTCTGGCCTCCAAAGGTGGGAGTTAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR CCA 90 bp | ATAACTCCCACCTTTGGAGGCCAGAAGTTCAACAGCCTGGGCGACATGATGAGAGGAGATCACAGTGAGTaGAGATCACACCACTGCACT | + |
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Preference number: 4 (lower is better) Translates to: ITPTFGGQKFNSLGDMMRGDHSE*RSHHCT Trigger: AGTGCAGTGGTGTGATCTCCACTCACTGTGATCTCC...TCTCATCATGTCGCCCAGGCTGTTGAACTTCTGGCCTCCAAAGGTGGGAGTTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR GCA 90 bp | ATAACTCCCACCTTTGGAGGCCAGAAGTTCAACAGCCTGGGCGACATGATGAGACCTTCTCTCCACTGTTaGACCAGCGAGATTTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: ITPTFGGQKFNSLGDMMRPSLHC*TSEIFC Trigger: ACAGAAAATCTCGCTGGTGCAACAGTGGAGAGAAGG...TCTCATCATGTCGCCCAGGCTGTTGAACTTCTGGCCTCCAAAGGTGGGAGTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR CCA 90 bp | ATAACTCCCACCTTTGGAGGCCAGAAGTTCAACAGCCTGGGCGACATGATGAGAAATAACTCCCACCTTTaGAGGCCAGAAGTTCAACAG | + |
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Preference number: 4 (lower is better) Translates to: ITPTFGGQKFNSLGDMMRNNSHL*RPEVQQ Trigger: CTGTTGAACTTCTGGCCTCCAAAGGTGGGAGTTATT...TCTCATCATGTCGCCCAGGCTGTTGAACTTCTGGCCTCCAAAGGTGGGAGTTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR TCA 90 bp | GAGAAGCAACTGAGTCTAGTCTGTGGCACTGGAAGTAGTCATTTTGCTCATCCCTCTTCAAGAAGTAGTTaGGGCCAGGTGCTCATACCT | + |
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Preference number: 4 (lower is better) Translates to: EKQLSLVCGTGSSHFAHPSSRSS*GQVLIP Trigger: AGGTATGAGCACCTGGCCTCAACTACTTCTTGAAGA...GGGATGAGCAAAATGACTACTTCCAGTGCCACAGACTAGACTCAGTTGCTTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR TCA 90 bp | ATAACTCCCACCTTTGGAGGCCAGAAGTTCAACAGCCTGGGCGACATGATGAGAAAGAGTGATTTAACATaGGACAAAGCTACTCCCCTA | + |
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Preference number: 4 (lower is better) Translates to: ITPTFGGQKFNSLGDMMRKSDLT*DKATPL Trigger: TAGGGGAGTAGCTTTGTCTCATGTTAAATCACTCTT...TCTCATCATGTCGCCCAGGCTGTTGAACTTCTGGCCTCCAAAGGTGGGAGTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR CCA 90 bp | ATAACTCCCACCTTTGGAGGCCAGAAGTTCAACAGCCTGGGCGACATGATGAGAGGGGGAAATAAACATTaGCATGGAAATGCCACAAAA | + |
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Preference number: 4 (lower is better) Translates to: ITPTFGGQKFNSLGDMMRGGNKH*HGNATK Trigger: TTTTGTGGCATTTCCATGCCAATGTTTATTTCCCCC...TCTCATCATGTCGCCCAGGCTGTTGAACTTCTGGCCTCCAAAGGTGGGAGTTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR CCA 90 bp | CAGCGAGATTTTCTGTCTGAGTTGTTTGAACTACTCTTTCCCACTCCACCAGTAAACAGGACAAGTACTTaGCCCTTCTCTCCACTGTTG | + |
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Preference number: 4 (lower is better) Translates to: QRDFLSELFELLFPTPPVNRTST*PFSPLL Trigger: CAACAGTGGAGAGAAGGGCCAAGTACTTGTCCTGTT...TACTGGTGGAGTGGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATCTCGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR TCA 90 bp | GAGAAGCAACTGAGTCTAGTCTGTGGCACTGGAAGTAGTCATTTTGCTCATCCCATGGTCACTGAATATTaGACCCAAAGTTATTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: EKQLSLVCGTGSSHFAHPMVTEY*TQSYWG Trigger: TCCCCAATAACTTTGGGTTCAATATTCAGTGACCAT...GGGATGAGCAAAATGACTACTTCCAGTGCCACAGACTAGACTCAGTTGCTTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR TCA 90 bp | GAGAAGCAACTGAGTCTAGTCTGTGGCACTGGAAGTAGTCATTTTGCTCATCCCAAGCATAATAGTGGGTaGAGTTCAGCTAAAGATAGG | + |
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Preference number: 4 (lower is better) Translates to: EKQLSLVCGTGSSHFAHPKHNSG*SSAKDR Trigger: CCTATCTTTAGCTGAACTTCACCCACTATTATGCTT...GGGATGAGCAAAATGACTACTTCCAGTGCCACAGACTAGACTCAGTTGCTTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR TCA 90 bp | CAGCGAGATTTTCTGTCTGAGTTGTTTGAACTACTCTTTCCCACTCCACCAGTACTTGGCATTATCAACTaGCTAATACCCAGTCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: QRDFLSELFELLFPTPPVLGIIN*LIPSPS Trigger: AGAGGGACTGGGTATTAGTCAGTTGATAATGCCAAG...TACTGGTGGAGTGGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATCTCGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR CCA 90 bp | ATAACTCCCACCTTTGGAGGCCAGAAGTTCAACAGCCTGGGCGACATGATGAGATGTAAAAGTCAACTATaGTCACTGAATATTGAACCC | + |
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Preference number: 4 (lower is better) Translates to: ITPTFGGQKFNSLGDMMRCKSQL*SLNIEP Trigger: GGGTTCAATATTCAGTGACCATAGTTGACTTTTACA...TCTCATCATGTCGCCCAGGCTGTTGAACTTCTGGCCTCCAAAGGTGGGAGTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR CCA 90 bp | ATAACTCCCACCTTTGGAGGCCAGAAGTTCAACAGCCTGGGCGACATGATGAGACAAATGAAGAAATGCTaGAAAATTGGAATCACTTCC | + |
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Preference number: 4 (lower is better) Translates to: ITPTFGGQKFNSLGDMMRQMKKC*KIGITS Trigger: GGAAGTGATTCCAATTTTCCAGCATTTCTTCATTTG...TCTCATCATGTCGCCCAGGCTGTTGAACTTCTGGCCTCCAAAGGTGGGAGTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR CCA 90 bp | GAGAAGCAACTGAGTCTAGTCTGTGGCACTGGAAGTAGTCATTTTGCTCATCCCAGAGATTGCACTTCTTaGCATTATCAACTGACTAAT | + |
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Preference number: 4 (lower is better) Translates to: EKQLSLVCGTGSSHFAHPRDCTS*HYQLTN Trigger: ATTAGTCAGTTGATAATGCCAAGAAGTGCAATCTCT...GGGATGAGCAAAATGACTACTTCCAGTGCCACAGACTAGACTCAGTTGCTTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR TCA 90 bp | CAGCGAGATTTTCTGTCTGAGTTGTTTGAACTACTCTTTCCCACTCCACCAGTAGTCAACTATGGTCACTaGATATTGAACCCAAAGTTA | + |
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Preference number: 4 (lower is better) Translates to: QRDFLSELFELLFPTPPVVNYGH*ILNPKL Trigger: TAACTTTGGGTTCAATATTCAGTGACCATAGTTGAC...TACTGGTGGAGTGGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATCTCGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR CCA 90 bp | CAGCGAGATTTTCTGTCTGAGTTGTTTGAACTACTCTTTCCCACTCCACCAGTAGAAATGCTGGAAAATTaGAATCACTTCCAAATTGCT | + |
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Preference number: 4 (lower is better) Translates to: QRDFLSELFELLFPTPPVEMLEN*NHFQIA Trigger: AGCAATTTGGAAGTGATTCCAATTTTCCAGCATTTC...TACTGGTGGAGTGGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATCTCGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| 3UTR CAA 72 bp | ACACACAACTCCAATTTATGCTATATGAATTATTATTaGGGCACAGGCATCTGCATTCAACTAGATTGCACT | + |
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Preference number: 4 (lower is better) Translates to: THNSNLCYMNYY*GTGICIQLDCT Trigger: AGTGCAATCTAGTTGAATGCAGATGCCTGTGCCCAAATAATAATTCATATAGCATAAATTGGAGTTGTGTGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR CAA 90 bp | CAGCGAGATTTTCTGTCTGAGTTGTTTGAACTACTCTTTCCCACTCCACCAGTACCCTTCTCTCCACTGTaGCACCAGCGAGATTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: QRDFLSELFELLFPTPPVPFSPL*HQRDFL Trigger: CAGAAAATCTCGCTGGTGCAACAGTGGAGAGAAGGG...TACTGGTGGAGTGGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATCTCGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR CAA 90 bp | ATAACTCCCACCTTTGGAGGCCAGAAGTTCAACAGCCTGGGCGACATGATGAGATCTCCTCCTCCAACCTaGAAGTCTTTTTCTTACATA | + |
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Preference number: 5 (lower is better) Translates to: ITPTFGGQKFNSLGDMMRSPPPT*KSFSYI Trigger: TATGTAAGAAAAAGACTTCAAGGTTGGAGGAGGAGA...TCTCATCATGTCGCCCAGGCTGTTGAACTTCTGGCCTCCAAAGGTGGGAGTTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR CAA 90 bp | ATAACTCCCACCTTTGGAGGCCAGAAGTTCAACAGCCTGGGCGACATGATGAGAGATTTTCTGTCTGAGTaGTTTGAACTACTCTTTCCC | + |
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Preference number: 5 (lower is better) Translates to: ITPTFGGQKFNSLGDMMRDFLSE*FELLFP Trigger: GGGAAAGAGTAGTTCAAACAACTCAGACAGAAAATC...TCTCATCATGTCGCCCAGGCTGTTGAACTTCTGGCCTCCAAAGGTGGGAGTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR CAA 90 bp | ATAACTCCCACCTTTGGAGGCCAGAAGTTCAACAGCCTGGGCGACATGATGAGAGGGTTAAAGAATGAATaGTCACCTTTTAAGAACCAG | + |
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Preference number: 5 (lower is better) Translates to: ITPTFGGQKFNSLGDMMRGLKNE*SPFKNQ Trigger: CTGGTTCTTAAAAGGTGACAATTCATTCTTTAACCC...TCTCATCATGTCGCCCAGGCTGTTGAACTTCTGGCCTCCAAAGGTGGGAGTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS-3UTR CAA 90 bp | GAGAAGCAACTGAGTCTAGTCTGTGGCACTGGAAGTAGTCATTTTGCTCATCCCAGAAATGCTGGAAAATaGGAATCACTTCCAAATTGC | + |
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Preference number: 5 (lower is better) Translates to: EKQLSLVCGTGSSHFAHPRNAGK*ESLPNC Trigger: GCAATTTGGAAGTGATTCCAATTTTCCAGCATTTCT...GGGATGAGCAAAATGACTACTTCCAGTGCCACAGACTAGACTCAGTTGCTTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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| CDS TCA 72 bp | AAATACCTATGGAATGTAAAAGTCAACTATGGTCACTaGATATTGAACCCAAAGTTATTGGGGAAGGTAGAA | + |
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Preference number: 6 (lower is better) Translates to: KYLWNVKVNYGH*ILNPKLLGKVE Trigger: TTCTACCTTCCCCAATAACTTTGGGTTCAATATTCAGTGACCATAGTTGACTTTTACATTCCATAGGTATTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000341948.6 |
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