Pregenerated sensors for PCDHB12 (Homo sapiens)
Ensembl gene IDs: ENSG00000120328Ensembl transcript IDs: ENST00000239450.4, ENST00000622978.1, ENST00000624949.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | ATGACAAAAACAGTATGGAATGGGAGCAAAGTCACTGACTTAGAGTCAGGCAGACACATGCACATTTCCTaGTTTGTGAAGTGTTCTTGG | + |
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Preference number: 2 (lower is better) Translates to: MTKTVWNGSKVTDLESGRHMHIS*FVKCSW Trigger: CCAAGAACACTTCACAAAGCAGGAAATGTGCATGTG...TCTGCCTGACTCTAAGTCAGTGACTTTGCTCCCATTCCATACTGTTTTTGTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| 3UTR-3UTR CAA 90 bp | ATGACAAAAACAGTATGGAATGGGAGCAAAGTCACTGACTTAGAGTCAGGCAGACTTTGTGAAGTGTTCTaGGTACTAAATCTGTATCCT | + |
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Preference number: 3 (lower is better) Translates to: MTKTVWNGSKVTDLESGRLCEVF*VLNLYP Trigger: AGGATACAGATTTAGTACCAAGAACACTTCACAAAG...TCTGCCTGACTCTAAGTCAGTGACTTTGCTCCCATTCCATACTGTTTTTGTCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR GCA 90 bp | CCAATGACAAAAACAGTATGGAATGGGAGCAAAGTCACTGACTTAGAGTCAGGCCGACTTCACTACCTGTaGTCTGGGGTAGGAAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: PMTKTVWNGSKVTDLESGRLHYL*SGVGSW Trigger: CCAACTTCCTACCCCAGAGCACAGGTAGTGAAGTCG...GCCTGACTCTAAGTCAGTGACTTTGCTCCCATTCCATACTGTTTTTGTCATTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR GCA 90 bp | ATGACAAAAACAGTATGGAATGGGAGCAAAGTCACTGACTTAGAGTCAGGCAGATATCTGCAGAGTGCCTaGCCCTCCGTTTTCCATAGC | + |
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Preference number: 4 (lower is better) Translates to: MTKTVWNGSKVTDLESGRYLQSA*PSVFHS Trigger: GCTATGGAAAACGGAGGGGCAGGCACTCTGCAGATA...TCTGCCTGACTCTAAGTCAGTGACTTTGCTCCCATTCCATACTGTTTTTGTCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR TCA 90 bp | ATGACAAAAACAGTATGGAATGGGAGCAAAGTCACTGACTTAGAGTCAGGCAGATGGGAAACGTGCCTCTaGTCTGTCTACCAAATCCTC | + |
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Preference number: 4 (lower is better) Translates to: MTKTVWNGSKVTDLESGRWETCL*SVYQIL Trigger: GAGGATTTGGTAGACAGATCAGAGGCACGTTTCCCA...TCTGCCTGACTCTAAGTCAGTGACTTTGCTCCCATTCCATACTGTTTTTGTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR GCA 90 bp | ATGACAAAAACAGTATGGAATGGGAGCAAAGTCACTGACTTAGAGTCAGGCAGAATCTTCTTGCAGAATTaGCTCAGCGCCTCTTCGCAG | + |
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Preference number: 4 (lower is better) Translates to: MTKTVWNGSKVTDLESGRIFLQN*LSASSQ Trigger: CTGCGAAGAGGCGCTGAGGCAATTCTGCAAGAAGAT...TCTGCCTGACTCTAAGTCAGTGACTTTGCTCCCATTCCATACTGTTTTTGTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR GCA 90 bp | CCAATGACAAAAACAGTATGGAATGGGAGCAAAGTCACTGACTTAGAGTCAGGCACAAAGCTCCCGCTCTaGAATTCCTCCATCACCAAA | + |
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Preference number: 4 (lower is better) Translates to: PMTKTVWNGSKVTDLESGTKLPL*NSSITK Trigger: TTTGGTGATGGAGGAATTGCAGAGCGGGAGCTTTGT...GCCTGACTCTAAGTCAGTGACTTTGCTCCCATTCCATACTGTTTTTGTCATTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR CCA 90 bp | ATGACAAAAACAGTATGGAATGGGAGCAAAGTCACTGACTTAGAGTCAGGCAGATCACTACCTGTGCTCTaGGGTAGGAAGTTGGGGATA | + |
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Preference number: 4 (lower is better) Translates to: MTKTVWNGSKVTDLESGRSLPVL*GRKLGI Trigger: TATCCCCAACTTCCTACCCCAGAGCACAGGTAGTGA...TCTGCCTGACTCTAAGTCAGTGACTTTGCTCCCATTCCATACTGTTTTTGTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR GCA 90 bp | GAACTTACTGAATCTCTAAGACCGTCTATTTGGTCATTACTAAAATACCATGTCGCCTTATCTGCAGAGTaGCTGCCCCTCCGTTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: ELTESLRPSIWSLLKYHVALSAE*LPLRFP Trigger: TGGAAAACGGAGGGGCAGGCACTCTGCAGATAAGGC...GACATGGTATTTTAGTAATGACCAAATAGACGGTCTTAGAGATTCAGTAAGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR GCA 90 bp | CCAATGACAAAAACAGTATGGAATGGGAGCAAAGTCACTGACTTAGAGTCAGGCCACATGCACATTTCCTaGTTTGTGAAGTGTTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: PMTKTVWNGSKVTDLESGHMHIS*FVKCSW Trigger: CCAAGAACACTTCACAAAGCAGGAAATGTGCATGTG...GCCTGACTCTAAGTCAGTGACTTTGCTCCCATTCCATACTGTTTTTGTCATTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR TCA 90 bp | GAACTTACTGAATCTCTAAGACCGTCTATTTGGTCATTACTAAAATACCATGTCTGGGAGCAAAGTCACTaGCTTAGAGTCAGGCAGATC | + |
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Preference number: 4 (lower is better) Translates to: ELTESLRPSIWSLLKYHVWEQSH*LRVRQI Trigger: GATCTGCCTGACTCTAAGTCAGTGACTTTGCTCCCA...GACATGGTATTTTAGTAATGACCAAATAGACGGTCTTAGAGATTCAGTAAGTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR GCA 90 bp | GAACTTACTGAATCTCTAAGACCGTCTATTTGGTCATTACTAAAATACCATGTCACCCCAAAATCTTCTTaGAGAATTGCCTCAGCGCCT | + |
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Preference number: 4 (lower is better) Translates to: ELTESLRPSIWSLLKYHVTPKSS*RIASAP Trigger: AGGCGCTGAGGCAATTCTGCAAGAAGATTTTGGGGT...GACATGGTATTTTAGTAATGACCAAATAGACGGTCTTAGAGATTCAGTAAGTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR TCA 90 bp | GAACTTACTGAATCTCTAAGACCGTCTATTTGGTCATTACTAAAATACCATGTCATGTTCAGGAGACAATaGGAAGGCATAGGTTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: ELTESLRPSIWSLLKYHVMFRRQ*EGIGCS Trigger: AGAGCAACCTATGCCTTCTCATTGTCTCCTGAACAT...GACATGGTATTTTAGTAATGACCAAATAGACGGTCTTAGAGATTCAGTAAGTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR GCA 90 bp | GAACTTACTGAATCTCTAAGACCGTCTATTTGGTCATTACTAAAATACCATGTCGAGTCCCAGGGTCTTTaGCAAATTTCCTACAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: ELTESLRPSIWSLLKYHVESQGL*QISYKA Trigger: AGCTTTGTAGGAAATTTGGCAAAGACCCTGGGACTC...GACATGGTATTTTAGTAATGACCAAATAGACGGTCTTAGAGATTCAGTAAGTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR CCA 90 bp | GAACTTACTGAATCTCTAAGACCGTCTATTTGGTCATTACTAAAATACCATGTCTTTAACCTTGTTGAATaGCTTCTAGGTTCTCCCTTA | + |
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Preference number: 4 (lower is better) Translates to: ELTESLRPSIWSLLKYHVFNLVE*LLGSPL Trigger: TAAGGGAGAACCTAGAAGCCATTCAACAAGGTTAAA...GACATGGTATTTTAGTAATGACCAAATAGACGGTCTTAGAGATTCAGTAAGTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR CCA 90 bp | GAACTTACTGAATCTCTAAGACCGTCTATTTGGTCATTACTAAAATACCATGTCATGACAAAAACAGTATaGAATGGGAGCAAAGTCACT | + |
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Preference number: 4 (lower is better) Translates to: ELTESLRPSIWSLLKYHVMTKTV*NGSKVT Trigger: AGTGACTTTGCTCCCATTCCATACTGTTTTTGTCAT...GACATGGTATTTTAGTAATGACCAAATAGACGGTCTTAGAGATTCAGTAAGTTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR CAA 90 bp | CCAATGACAAAAACAGTATGGAATGGGAGCAAAGTCACTGACTTAGAGTCAGGCAACCCCAAAATCTTCTaGCAGAATTGCCTCAGCGCC | + |
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Preference number: 5 (lower is better) Translates to: PMTKTVWNGSKVTDLESGNPKIF*QNCLSA Trigger: GGCGCTGAGGCAATTCTGCAAGAAGATTTTGGGGTT...GCCTGACTCTAAGTCAGTGACTTTGCTCCCATTCCATACTGTTTTTGTCATTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR CAA 90 bp | ATGACAAAAACAGTATGGAATGGGAGCAAAGTCACTGACTTAGAGTCAGGCAGAAATCTTCTTGCAGAATaGCCTCAGCGCCTCTTCGCA | + |
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Preference number: 5 (lower is better) Translates to: MTKTVWNGSKVTDLESGRNLLAE*PQRLFA Trigger: TGCGAAGAGGCGCTGAGGCAATTCTGCAAGAAGATT...TCTGCCTGACTCTAAGTCAGTGACTTTGCTCCCATTCCATACTGTTTTTGTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR CAA 90 bp | ATGACAAAAACAGTATGGAATGGGAGCAAAGTCACTGACTTAGAGTCAGGCAGATCAAACTCAGGGGAGTaGTCATTAATATCTACAACC | + |
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Preference number: 5 (lower is better) Translates to: MTKTVWNGSKVTDLESGRSNSGE*SLISTT Trigger: GGTTGTAGATATTAATGACAACTCCCCTGAGTTTGA...TCTGCCTGACTCTAAGTCAGTGACTTTGCTCCCATTCCATACTGTTTTTGTCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS-3UTR CAA 90 bp | GAACTTACTGAATCTCTAAGACCGTCTATTTGGTCATTACTAAAATACCATGTCCTTTGTGAAGTGTTCTaGGTACTAAATCTGTATCCT | + |
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Preference number: 5 (lower is better) Translates to: ELTESLRPSIWSLLKYHVLCEVF*VLNLYP Trigger: AGGATACAGATTTAGTACCAAGAACACTTCACAAAG...GACATGGTATTTTAGTAATGACCAAATAGACGGTCTTAGAGATTCAGTAAGTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239450.4 |
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| CDS TCA 72 bp | CTCAGCGCCTCTTCGCAGTTGTGGGAAACGTGCCTCTaGTCTGTCTACCAAATCCTCGGAAGCCTGAAGATT | + |
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Preference number: 6 (lower is better) Translates to: LSASSQLWETCL*SVYQILGSLKI Trigger: AATCTTCAGGCTTCCGAGGATTTGGTAGACAGATCAGAGGCACGTTTCCCACAACTGCGAAGAGGCGCTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000239450.4 ENST00000622978.1 ENST00000624949.1 |
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| CDS GCA 72 bp | AGGGTCTTTGCCAAATTTCCTACAAAGCTCCCGCTCTaGAATTCCTCCATCACCAAAAAGTTCCCAGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: RVFAKFPTKLPL*NSSITKKFPVS Trigger: TGAAACTGGGAACTTTTTGGTGATGGAGGAATTGCAGAGCGGGAGCTTTGTAGGAAATTTGGCAAAGACCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000239450.4 ENST00000622978.1 |
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| CDS CCA 72 bp | AATCCTCGGAAGCCTGAAGATTTTAACCTTGTTGAATaGCTTCTAGGTTCTCCCTTAAAGGATTGTTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: NPRKPEDFNLVE*LLGSPLKDCSF Trigger: GAAAGAACAATCCTTTAAGGGAGAACCTAGAAGCCATTCAACAAGGTTAAAATCTTCAGGCTTCCGAGGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000239450.4 ENST00000622978.1 ENST00000624949.1 |
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