Pregenerated sensors for PCDHB11 (Homo sapiens)
Ensembl gene IDs: ENSG00000197479Ensembl transcript IDs: ENST00000354757.5, ENST00000624887.1
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAGAGGCGGAGGTGGGCTaGTCTCTTGAGCCCAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKEAEVG*SLEPRR Trigger: CCTCCTGGGCTCAAGAGACCAGCCCACCTCCGCCTC...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR TCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAGGTGGGCTGGTCTCTTaGGCCCAGGAGGCAGAGGTT | + |
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Preference number: 2 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKGGLVS*AQEAEV Trigger: AACCTCTGCCTCCTGGGCTCAAGAGACCAGCCCACC...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR CCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAAGCCGAGCGTGGTGGTaGGCGCCTGTAATGCCAGCT | + |
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Preference number: 2 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKSRAWW*APVMPA Trigger: AGCTGGCATTACAGGCGCCCACCACCACGCTCGGCT...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR GCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAACCGAGAGGCGGAGGGTaGAGTGAGCTGAGATCACAC | + |
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Preference number: 2 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKPRGGG*SELRSH Trigger: GTGTGATCTCAGCTCACTGCACCCTCCGCCTCTCGG...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR CCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAACACTTTGGGAGGCCGTaGCGGGTGGAACATGAGGTC | + |
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Preference number: 2 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKHFGRP*RVEHEV Trigger: GACCTCATGTTCCACCCGCCACGGCCTCCCAAAGTG...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR CCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAACTTGGAGGCGGAGGTaGGCTGGTCTCTTGAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKTWRRR*AGLLSP Trigger: TGGGCTCAAGAGACCAGCCCACCTCCGCCTCCAAGT...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR CCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAGTAGTCCCAGCTACTTaGAGGCGGAGGTGGGCTGGT | + |
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Preference number: 2 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKVVPAT*RRRWAG Trigger: ACCAGCCCACCTCCGCCTCCAAGTAGCTGGGACTAC...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR TCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAGAGGTTGCAGTGAGCTaGGATCCTGCCACTGACCTC | + |
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Preference number: 2 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKEVAVS*DPATDL Trigger: GAGGTCAGTGGCAGGATCTCAGCTCACTGCAACCTC...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR TCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAAGGCAGAGGTTGCAGTaGGCTGAGATCCTGCCACTG | + |
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Preference number: 2 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKRQRLQ*AEILPL Trigger: CAGTGGCAGGATCTCAGCTCACTGCAACCTCTGCCT...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR CCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAATTTAGCCGAGCGTGGTaGTGGGCGCCTGTAATGCCA | + |
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Preference number: 2 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKFSRAW*WAPVMP Trigger: TGGCATTACAGGCGCCCACCACCACGCTCGGCTAAA...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR CCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAGTAATCACAGCACTTTaGGAGGCCGTGGCGGGTGGA | + |
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Preference number: 2 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKVITAL*EAVAGG Trigger: TCCACCCGCCACGGCCTCCCAAAGTGCTGTGATTAC...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR TCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAGAGGGTGCAGTGAGCTaGGATCACACCATTGCACTC | + |
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Preference number: 2 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKEGAVS*DHTIAL Trigger: GAGTGCAATGGTGTGATCTCAGCTCACTGCACCCTC...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR GCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAACTGATGCAGGAGAATTaGTTGAACCCGAGAGGCGGA | + |
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Preference number: 2 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKLMQEN*LNPRGG Trigger: TCCGCCTCTCGGGTTCAAGCAATTCTCCTGCATCAG...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR CCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAAAATTTAGCCGAGCGTaGTGGTGGGCGCCTGTAATG | + |
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Preference number: 2 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKKFSRA*WWAPVM Trigger: CATTACAGGCGCCCACCACCACGCTCGGCTAAATTT...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR TCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAGTGGCGGGTGGAACATaGGGTCAAGAGTTTAAAACC | + |
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Preference number: 2 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKVAGGT*GQEFKT Trigger: GGTTTTAAACTCTTGACCTCATGTTCCACCCGCCAC...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR CAA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAGGTAATCACAGCACTTaGGGAGGCCGTGGCGGGTGG | + |
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Preference number: 3 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKGNHST*GGRGGW Trigger: CCACCCGCCACGGCCTCCCAAAGTGCTGTGATTACC...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR CAA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAATGCAGGAGAATTGCTaGAACCCGAGAGGCGGAGGG | + |
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Preference number: 3 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKMQENC*NPRGGG Trigger: CCCTCCGCCTCTCGGGTTCAAGCAATTCTCCTGCAT...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| 3UTR-3UTR CAA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAGCTGATGCAGGAGAATaGCTTGAACCCGAGAGGCGG | + |
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Preference number: 3 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKADAGE*LEPERR Trigger: CCGCCTCTCGGGTTCAAGCAATTCTCCTGCATCAGC...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR GCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAACCGGGAGGCAGAGACTaGAGTGAGCCGAGATCACGC | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKPGGRD*SEPRSR Trigger: GCGTGATCTCGGCTCACTGCAGTCTCTGCCTCCCGG...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR TCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAAGGCAGAGACTGCAGTaGGCCGAGATCACGCCATTG | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKRQRLQ*AEITPL Trigger: CAATGGCGTGATCTCGGCTCACTGCAGTCTCTGCCT...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR TCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAAGCTTTTTGGGAGGCTaGGGCGGGCGGATCACTGAT | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKSFLGG*GGRITD Trigger: ATCAGTGATCCGCCCGCCTCAGCCTCCCAAAAAGCT...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR TCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAATGCGGAACGCGTCTCTaGCTTGTCCACCAAATCCTC | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKCGTRL*LVHQIL Trigger: GAGGATTTGGTGGACAAGTCAGAGACGCGTTCCGCA...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR TCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAACTTGCCTTATCTGCTaGGTGCGTGTCCCTTGGTTC | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKTCLIC*VRVPWF Trigger: GAACCAAGGGACACGCACTCAGCAGATAAGGCAAGT...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR TCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAGGGGAGTGCATCTCTTaGGCTCAGAAGTTAAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKGECIS*AQKLKA Trigger: GGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCC...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR GCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAGCCTTATCTGCTGAGTaGGTGTCCCTTGGTTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKALSAE*VSLGSP Trigger: TGGAGAACCAAGGGACACGCACTCAGCAGATAAGGC...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR TCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAATCCAGGTCACCCTCTTaGAGGCTTGTTGTTTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKSRSPS*RLVVSV Trigger: GACAGAAACAACAAGCCTTCAAGAGGGTGACCTGGA...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR GCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAGGTCCTTTGCCAGATTaGCTACAAAACTCCCGCTCT | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKGPLPD*LQNSRS Trigger: AGAGCGGGAGTTTTGTAGGCAATCTGGCAAAGGACC...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR TCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAATAGGATGCAGACAGTaGAAAATACTAGGGGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKIGCRQ*KILGEP Trigger: AGGCTCCCCTAGTATTTTTCACTGTCTGCATCCTAT...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR GCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAACAAAACTCCCGCTCTaGATTTCTTCTGCCACAGAA | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKTKLPL*ISSATE Trigger: TTCTGTGGCAGAAGAAATGCAGAGCGGGAGTTTTGT...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR CCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAACCAAGACCTTTTGCCTaGATATTAGGGATAACCGGT | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKPRPFA*ILGITG Trigger: ACCGGTTATCCCTAATATCCAGGCAAAAGGTCTTGG...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR TCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAACCGGTTTTAGGAACTTaGATTCATTTGTCTCGGAAC | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKPVLGT*IHLSRN Trigger: GTTCCGAGACAAATGAATTCAAGTTCCTAAAACCGG...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR GCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAATTTTGCATTAACACCTaGAAATGTAGCACGCAAGGC | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKFCINT*KCSTQG Trigger: GCCTTGCGTGCTACATTTGCAGGTGTTAATGCAAAA...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR GCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAACTTCCCAAGACCTTTTaGCTGGATATTAGGGATAAC | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKLPKTF*LDIRDN Trigger: GTTATCCCTAATATCCAGGCAAAAGGTCTTGGGAAG...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR CCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAATTTAACCCTGTTGAATaGTTTCCAGGTCACCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKFNPVE*FPGHPL Trigger: AAGAGGGTGACCTGGAAACCATTCAACAGGGTTAAA...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR GCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAGTGTTTATGTCCAGCTaGAAACGCTGTTTCTTATCA | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKVFMSS*KRCFLS Trigger: TGATAAGAAACAGCGTTTGCAGCTGGACATAAACAC...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR TCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAATTGGATTATAAGCCATaGTCTCTCTCTCTCTCTATA | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKLDYKP*SLSLSI Trigger: TATAGAGAGAGAGAGAGATCATGGCTTATAATCCAA...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR CCA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAACCAGAGTCTATATCTTaGATACTAAAAACCATAACC | + |
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Preference number: 4 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKPESIS*ILKTIT Trigger: GGTTATGGTTTTTAGTATCCAAGATATAGACTCTGG...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR CAA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAGCCGAGATCACGCCATaGCACACCAGCCTGGGCGAC | + |
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Preference number: 5 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKAEITP*HTSLGD Trigger: GTCGCCCAGGCTGGTGTGCAATGGCGTGATCTCGGC...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR CAA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAGAACGCGTCTCTGACTaGTCCACCAAATCCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKERVSD*STKSSV Trigger: CACAGAGGATTTGGTGGACAAGTCAGAGACGCGTTC...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR CAA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAAAGGTCCTTTGCCAGATaGCCTACAAAACTCCCGCTC | + |
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Preference number: 5 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKRSFAR*PTKLPL Trigger: GAGCGGGAGTTTTGTAGGCAATCTGGCAAAGGACCT...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR CAA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAATCAGCCCCAGGTCCTTaGCCAGATTGCCTACAAAAC | + |
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Preference number: 5 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKSAPGP*PDCLQN Trigger: GTTTTGTAGGCAATCTGGCAAAGGACCTGGGGCTGA...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR CAA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAACTGAGTGCGTGTCCCTaGGTTCTCCATAGTTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKLSACP*VLHSSF Trigger: AAAGGAACTATGGAGAACCAAGGGACACGCACTCAG...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR CAA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAATTCCAGGTCACCCTCTaGAAGGCTTGTTGTTTCTGT | + |
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Preference number: 5 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKFQVTL*KACCFC Trigger: ACAGAAACAACAAGCCTTCAAGAGGGTGACCTGGAA...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS-3UTR CAA 90 bp | AGGCTGAGGGGAGTGCATCTCTTGAGCTCAGAAGTTAAAGGCCAGCCTAAGAAATTTCTTGTAGGCTTCTaGAAGAAAGGCTTCAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: RLRGVHLLSSEVKGQPKKFLVGF*KKGFSS Trigger: AGAGCTGAAGCCTTTCTTCAAGAAGCCTACAAGAAA...TTTCTTAGGCTGGCCTTTAACTTCTGAGCTCAAGAGATGCACTCCCCTCAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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| CDS CAA 90 bp | AGTGCGTGTCCCTTGGTTCTCCATAGTTCCTTTCTTGTAGGCTTCTaGAAGAAAGGCTTCAGCTCTGCGGAACGCGTCTCTGACTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: SACPLVLHSSFLVGF*KKGFSSAERVSDLS Trigger: GGACAAGTCAGAGACGCGTTCCGCAGAGCTGAAGCCTTTCTTCAAGAAGCCTACAAGAAAGGAACTATGGAGAACCAAGGGACACGCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000354757.5 ENST00000624887.1 |
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| CDS GCA 72 bp | AGGTCCTTTGCCAGATTGCCTACAAAACTCCCGCTCTaGATTTCTTCTGCCACAGAAAAGCTCCAGGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: RSFARLPTKLPL*ISSATEKLQVS Trigger: TGAAACCTGGAGCTTTTCTGTGGCAGAAGAAATGCAGAGCGGGAGTTTTGTAGGCAATCTGGCAAAGGACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000354757.5 |
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