RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCDHA6 (Homo sapiens)

Ensembl gene IDs: ENSG00000081842

Ensembl transcript IDs: ENST00000378126.4, ENST00000527624.1, ENST00000529310.6

Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp ATGAACACTATTGCCTCCCGGAATCACAAGTCTGAAAAGGGAACCACAGATAAACTGAGGTGCAGATTGTaGACAGTGATTTCTAATTTC +
Preference number: 2 (lower is better)
Translates to: MNTIASRNHKSEKGTTDKLRCRL*TVISNF
Trigger: GAAATTAGAAATCACTGTCCACAATCTGCACCTCAG...TTTATCTGTGGTTCCCTTTTCAGACTTGTGATTCCGGGAGGCAATAGTGTTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378126.4
3UTR GCA 72 bp CAACCTCTCACTGGCGGGGCTGGGAAGCCTCTCCTTTaGGGCGGAGGAGAAAGGAAACTTGGGTCTGCTTTT +
Preference number: 3 (lower is better)
Translates to: QPLTGGAGKPLL*GGGERKLGSAF
Trigger: AAAAGCAGACCCAAGTTTCCTTTCTCCTCCGCCGCAAAGGAGAGGCTTCCCAGCCCCGCCAGTGAGAGGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000529310.6
3UTR GCA 72 bp GAAAAAGGAGCAGGGAATTGCTACATGGGAGAGATTTaGCATTATTACAAAAACTGGCTAAGTGGCTTGTTT +
Preference number: 3 (lower is better)
Translates to: EKGAGNCYMGEI*HYYKNWLSGLF
Trigger: AAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAGCAATTCCCTGCTCCTTTTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
3UTR-3UTR CAA 90 bp CGGAATCACAAGTCTGAAAAGGGAACCACAGATAAAAACTATGATGATCAGAGTATTCTGAGGTGCAGATaGTGGACAGTGATTTCTAAT +
Preference number: 3 (lower is better)
Translates to: RNHKSEKGTTDKNYDDQSILRCR*WTVISN
Trigger: ATTAGAAATCACTGTCCACAATCTGCACCTCAGAAT...ACTCTGATCATCATAGTTTTTATCTGTGGTTCCCTTTTCAGACTTGTGATTCCG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378126.4
3UTR GCA 72 bp CAACTTCAAAGAGGTCAGATTGGTAAAATTTGTGCTTaGACACCCTCATGGAATATTGTCAGTATTCATTCC +
Preference number: 3 (lower is better)
Translates to: QLQRGQIGKICA*TPSWNIVSIHS
Trigger: GGAATGAATACTGACAATATTCCATGAGGGTGTGCAAGCACAAATTTTACCAATCTGACCTCTTTGAAGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR GCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGGAAGCGAGCGCTGCTTaGCGGGGGCTGCAGCTCATA +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQEASAA*RGLQLI
Trigger: TATGAGCTGCAGCCCCCGGCAAGCAGCGCTCGCTTC...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR GCA 90 bp CCTCAATGGTTTAAAAGGGGGACAATAAATGAACACTATTGCCTCCCGGAATCAACGGGAAGCGAGCGCTaGTTGCCGGGGGCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: PQWFKRGTINEHYCLPESTGSER*LPGAAA
Trigger: AGCTGCAGCCCCCGGCAAGCAGCGCTCGCTTCCCGT...TGATTCCGGGAGGCAATAGTGTTCATTTATTGTCCCCCTTTTAAACCATTGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000378126.4
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGGACACCCGCACCGACTaGAGGGGACACTTCTCCTGC +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQDTRTD*RGHFSC
Trigger: GCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTC...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGTCTCACTGGCGGGGCTaGGAAGCCTCTCCTTTGCGG +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQSHWRG*EASPLR
Trigger: CCGCAAAGGAGAGGCTTCCCAGCCCCGCCAGTGAGA...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGAGTCCAACCTCTCACTaGCGGGGCTGGGAAGCCTCT +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQSPTSH*RGWEAS
Trigger: AGAGGCTTCCCAGCCCCGCCAGTGAGAGGTTGGACT...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR TCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGTTGGGCTGTCGTGGCTaGAACTGCAGCAGCTCTAGC +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQLGCRG*NCSSSS
Trigger: GCTAGAGCTGCTGCAGTTTCAGCCACGACAGCCCAA...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000527624.1
CDS-3UTR GCA 90 bp CCTCAATGGTTTAAAAGGGGGACAATAAATGAACACTATTGCCTCCCGGAATCAGAAGCGAGCGCTGCTTaGCGGGGGCTGCAGCTCATA +
Preference number: 4 (lower is better)
Translates to: PQWFKRGTINEHYCLPESEASAA*RGLQLI
Trigger: TATGAGCTGCAGCCCCCGGCAAGCAGCGCTCGCTTC...TGATTCCGGGAGGCAATAGTGTTCATTTATTGTCCCCCTTTTAAACCATTGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000378126.4
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGTGCACTGGATACTGTTaGCCACTGCTGATCAGGCCC +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQCTGYC*PLLIRP
Trigger: GGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCA...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTACATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCGACACCCGCACCGACTaGAGGGGACACTTCTCCTGC +
Preference number: 4 (lower is better)
Translates to: LHGRDLPLLQKLAKWLVSDTRTD*RGHFSC
Trigger: GCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTC...GGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGGCCACACATACCCAGTaGCCACAAACTCCCAAGCTG +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQATHTQ*PQTPKL
Trigger: CAGCTTGGGAGTTTGTGGCCACTGGGTATGTGTGGC...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGGTTCTGGTGTTGCACTaGATACTGTTGGCCACTGCT +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQVLVLH*ILLATA
Trigger: AGCAGTGGCCAACAGTATCCAGTGCAACACCAGAAC...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGTCCTGCCTCTGGTTCTaGTGTTGCACTGGATACTGT +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQSCLWF*CCTGYC
Trigger: ACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGA...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTACATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCAACGCCAGTCAGGGTTaGGCTGTCGTGGTTTGGCAT +
Preference number: 4 (lower is better)
Translates to: LHGRDLPLLQKLAKWLVSNASQG*AVVVWH
Trigger: ATGCCAAACCACGACAGCCCAACCCTGACTGGCGTT...GGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR CCA 90 bp CTACATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCTGCACTGGATACTGTTaGCCACTGCTGATCAGGCCC +
Preference number: 4 (lower is better)
Translates to: LHGRDLPLLQKLAKWLVSCTGYC*PLLIRP
Trigger: GGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCA...GGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTACATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCCGGGACCGGATTGTTTaGGGTTGCCTGGTCCGTATT +
Preference number: 4 (lower is better)
Translates to: LHGRDLPLLQKLAKWLVSRDRIV*GCLVRI
Trigger: AATACGGACCAGGCAACCCCAAACAATCCGGTCCCG...GGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTACATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCGTCTCAGCCAATATCTaGCACTCGCATACCCGCGGT +
Preference number: 4 (lower is better)
Translates to: LHGRDLPLLQKLAKWLVSVSANI*HSHTRG
Trigger: ACCGCGGGTATGCGAGTGCCAGATATTGGCTGAGAC...GGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR CCA 90 bp CATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCATTAGGGTTGGGCTGTCGTaGCTGAAACTGCAGCAGCTC +
Preference number: 4 (lower is better)
Translates to: HGRDLPLLQKLAKWLVSIRVGLS*LKLQQL
Trigger: GAGCTGCTGCAGTTTCAGCCACGACAGCCCAACCCT...AATGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000527624.1
CDS-3UTR CCA 90 bp CTACATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCAACGCCAGTCAGGGTTaGGCTGTCGTGGCTGAAACT +
Preference number: 4 (lower is better)
Translates to: LHGRDLPLLQKLAKWLVSNASQG*AVVAET
Trigger: AGTTTCAGCCACGACAGCCCAACCCTGACTGGCGTT...GGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000527624.1
CDS-3UTR CCA 90 bp CTACATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCCACTTCTCCTGCCTCTaGTTCTGGTGTTGCACTGGA +
Preference number: 4 (lower is better)
Translates to: LHGRDLPLLQKLAKWLVSHFSCL*FWCCTG
Trigger: TCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTG...GGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGTTGTTTGGGGTTGCCTaGTCCGTATTTAAAGGTCCA +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQLFGVA*SVFKGP
Trigger: TGGACCTTTAAATACGGACCAGGCAACCCCAAACAA...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCATTCGGGACCGGATTGTTTaGGGTTGCCTGGTCCGTATT +
Preference number: 4 (lower is better)
Translates to: HGRDLPLLQKLAKWLVSIRDRIV*GCLVRI
Trigger: AATACGGACCAGGCAACCCCAAACAATCCGGTCCCG...AATGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGGATTGCAGGAGATCCTaGGATAATGAATTTGTCGGG +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQDCRRS*DNEFVG
Trigger: CCCGACAAATTCATTATCCCAGGATCTCCTGCAATC...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTACATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCTTGTCTCCTAGAGGGTaGCTGCCACCTCTTGAGTTG +
Preference number: 4 (lower is better)
Translates to: LHGRDLPLLQKLAKWLVSLSPRG*LPPLEL
Trigger: CAACTCAAGAGGTGGCAGCCACCCTCTAGGAGACAA...GGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGATACATGGGCTTCAGTaGGGCAAAATGATCACAACC +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQIHGLQ*GKMITT
Trigger: GGTTGTGATCATTTTGCCCCACTGAAGCCCATGTAT...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR TCA 90 bp CCTCAATGGTTTAAAAGGGGGACAATAAATGAACACTATTGCCTCCCGGAATCAAAGGGGGACAATAAATaGACACTATTGCCTCCCGGA +
Preference number: 4 (lower is better)
Translates to: PQWFKRGTINEHYCLPESKGDNK*TLLPPG
Trigger: TCCGGGAGGCAATAGTGTTCATTTATTGTCCCCCTT...TGATTCCGGGAGGCAATAGTGTTCATTTATTGTCCCCCTTTTAAACCATTGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000378126.4
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGTGGGCTGTCGTGGTTTaGCATCATGATCTTCATTTA +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQWAVVV*HHDLHL
Trigger: TAAATGAAGATCATGATGCCAAACCACGACAGCCCA...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR CCA 90 bp CATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCATTCACTTCTCCTGCCTCTaGTTCTGGTGTTGCACTGGA +
Preference number: 4 (lower is better)
Translates to: HGRDLPLLQKLAKWLVSIHFSCL*FWCCTG
Trigger: TCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTG...AATGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGTTCTGTTTCCCAGGGTaGTTCTCTGTTAAAACACTG +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQFCFPG*FSVKTL
Trigger: CAGTGTTTTAACAGAGAACCACCCTGGGAAACAGAA...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGTGGAAACACAGAATCTaGCAGCCTAGATTCGTAAAT +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQWKHRI*QPRFVN
Trigger: ATTTACGAATCTAGGCTGCCAGATTCTGTGTTTCCA...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCATTGTTCTGGTGTTGCACTaGATACTGTTGGCCACTGCT +
Preference number: 4 (lower is better)
Translates to: HGRDLPLLQKLAKWLVSIVLVLH*ILLATA
Trigger: AGCAGTGGCCAACAGTATCCAGTGCAACACCAGAAC...AATGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCATTTCCTGCCTCTGGTTCTaGTGTTGCACTGGATACTGT +
Preference number: 4 (lower is better)
Translates to: HGRDLPLLQKLAKWLVSISCLWF*CCTGYC
Trigger: ACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGA...AATGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGAGGAGAAAGGAAACTTaGGTCTGCTTTTTAGGTTCT +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQRRKET*VCFLGS
Trigger: AGAACCTAAAAAGCAGACCCAAGTTTCCTTTCTCCT...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGGAGATGGCTCTTGGCTaGACCATAAATAAAATTCCT +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQEMALG*TINKIP
Trigger: AGGAATTTTATTTATGGTCCAGCCAAGAGCCATCTC...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR TCA 90 bp ATGAACACTATTGCCTCCCGGAATCACAAGTCTGAAAAGGGAACCACAGATAAATCTTCATTTAAATCCTaGTTCTCCGCCTTACCCATC +
Preference number: 4 (lower is better)
Translates to: MNTIASRNHKSEKGTTDKSSFKS*FSALPI
Trigger: GATGGGTAAGGCGGAGAATCAGGATTTAAATGAAGA...TTTATCTGTGGTTCCCTTTTCAGACTTGTGATTCCGGGAGGCAATAGTGTTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378126.4
CDS-3UTR CCA 90 bp CTACATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCCCAATTAGTCTAAGCTaGCTCGTCTCAGCCAATATC +
Preference number: 4 (lower is better)
Translates to: LHGRDLPLLQKLAKWLVSPISLS*LVSANI
Trigger: GATATTGGCTGAGACGAGCCAGCTTAGACTAATTGG...GGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGGTAACTAACATGGATTaGAAAGCACTTCGCAAATGT +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQVTNMD*KALRKC
Trigger: ACATTTGCGAAGTGCTTTCCAATCCATGTTAGTTAC...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR TCA 90 bp CTACATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCTCTTCATTTAAATCCTaGTTCTCCGCCTTACCCATC +
Preference number: 4 (lower is better)
Translates to: LHGRDLPLLQKLAKWLVSSSFKS*FSALPI
Trigger: GATGGGTAAGGCGGAGAATCAGGATTTAAATGAAGA...GGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR GCA 90 bp ATGAACACTATTGCCTCCCGGAATCACAAGTCTGAAAAGGGAACCACAGATAAATTAATCCATTTCTTCTaGGTCCGCCATCATTCAACA +
Preference number: 4 (lower is better)
Translates to: MNTIASRNHKSEKGTTDKLIHFF*VRHHST
Trigger: TGTTGAATGATGGCGGACGCAGAAGAAATGGATTAA...TTTATCTGTGGTTCCCTTTTCAGACTTGTGATTCCGGGAGGCAATAGTGTTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378126.4
CDS-3UTR CCA 90 bp CATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCATTTTGTTTGGGGTTGCCTaGTCCGTATTTAAAGGTCCA +
Preference number: 4 (lower is better)
Translates to: HGRDLPLLQKLAKWLVSILFGVA*SVFKGP
Trigger: TGGACCTTTAAATACGGACCAGGCAACCCCAAACAA...AATGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGCATTATTACAAAAACTaGCTAAGTGGCTTGTTTCCA +
Preference number: 4 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQHYYKN*LSGLFP
Trigger: TGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATG...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTACATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCGAAAACAAGCCAGAGTaGAGAGAAAGAGTTAACACC +
Preference number: 4 (lower is better)
Translates to: LHGRDLPLLQKLAKWLVSENKPE*RERVNT
Trigger: GGTGTTAACTCTTTCTCTCCACTCTGGCTTGTTTTC...GGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR CCA 90 bp CATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCATTGTAAGGTCAGATACATaGGCTTCAGTGGGGCAAAAT +
Preference number: 4 (lower is better)
Translates to: HGRDLPLLQKLAKWLVSIVRSDT*ASVGQN
Trigger: ATTTTGCCCCACTGAAGCCCATGTATCTGACCTTAC...AATGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR GCA 90 bp CCCGGAATCACAAGTCTGAAAAGGGAACCACAGATAAAAACTATGATGATCAGAATAAATGAACACTATTaGCTCCCGGAATCACAAGTC +
Preference number: 4 (lower is better)
Translates to: PGITSLKREPQIKTMMIRINEHY*LPESQV
Trigger: GACTTGTGATTCCGGGAGGCAATAGTGTTCATTTAT...TCTGATCATCATAGTTTTTATCTGTGGTTCCCTTTTCAGACTTGTGATTCCGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378126.4
CDS-3UTR CCA 90 bp CCCGGAATCACAAGTCTGAAAAGGGAACCACAGATAAAAACTATGATGATCAGATGGAAACACAGAATCTaGCAGCCTAGATTCGTAAAT +
Preference number: 4 (lower is better)
Translates to: PGITSLKREPQIKTMMIRWKHRI*QPRFVN
Trigger: ATTTACGAATCTAGGCTGCCAGATTCTGTGTTTCCA...TCTGATCATCATAGTTTTTATCTGTGGTTCCCTTTTCAGACTTGTGATTCCGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378126.4
CDS-3UTR CCA 90 bp CATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCATTTCACTTTTGTCAATTTaGCTGTTAGTAGGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: HGRDLPLLQKLAKWLVSISLLSI*LLVGSC
Trigger: GCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGA...AATGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTACATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCGCTTGCACACCCTCATaGAATATTGTCAGTATTCAT +
Preference number: 4 (lower is better)
Translates to: LHGRDLPLLQKLAKWLVSACTPS*NIVSIH
Trigger: ATGAATACTGACAATATTCCATGAGGGTGTGCAAGC...GGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR GCA 90 bp CATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCATTTTAATCCATTTCTTCTaGGTCCGCCATCATTCAACA +
Preference number: 4 (lower is better)
Translates to: HGRDLPLLQKLAKWLVSILIHFF*VRHHST
Trigger: TGTTGAATGATGGCGGACGCAGAAGAAATGGATTAA...AATGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS-3UTR CCA 90 bp CATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCATTTGGAAACACAGAATCTaGCAGCCTAGATTCGTAAAT +
Preference number: 4 (lower is better)
Translates to: HGRDLPLLQKLAKWLVSIWKHRI*QPRFVN
Trigger: ATTTACGAATCTAGGCTGCCAGATTCTGTGTTTCCA...AATGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CGGAATCACAAGTCTGAAAAGGGAACCACAGATAAAAACTATGATGATCAGAGTCTGAGGTGCAGATTGTaGACAGTGATTTCTAATTTC +
Preference number: 4 (lower is better)
Translates to: RNHKSEKGTTDKNYDDQSLRCRL*TVISNF
Trigger: GAAATTAGAAATCACTGTCCACAATCTGCACCTCAG...ACTCTGATCATCATAGTTTTTATCTGTGGTTCCCTTTTCAGACTTGTGATTCCG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378126.4
CDS-3UTR CCA 90 bp CATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCATTCAGGGAATTGCTACATaGGAGAGATTTGCCATTATT +
Preference number: 4 (lower is better)
Translates to: HGRDLPLLQKLAKWLVSIQGIAT*ERFAII
Trigger: AATAATGGCAAATCTCTCCCATGTAGCAATTCCCTG...AATGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTACATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCCATTATTACAAAAACTaGCTAAGTGGCTTGTTTCCA +
Preference number: 4 (lower is better)
Translates to: LHGRDLPLLQKLAKWLVSHYYKN*LSGLFP
Trigger: TGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATG...GGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CCA 90 bp CTACATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCCTTTTGCATAAGTATTaGAAAAGGATCTGGCCTTTT +
Preference number: 4 (lower is better)
Translates to: LHGRDLPLLQKLAKWLVSLLHKY*KRIWPF
Trigger: AAAAGGCCAGATCCTTTTCCAATACTTATGCAAAAG...GGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000529310.6
CDS GCA 90 bp CTGTTGGCCACTGCTGATCAGGCCCTCCTGGACCAGCCCGTAGAATaGCAGCCTCCTCTAGGTGCACAGAGCTGTGCATGCCTGCTCTCA +
Preference number: 5 (lower is better)
Translates to: LLATADQALLDQPVE*QPPLGAQSCACLLS
Trigger: TGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CAA 90 bp CTGCAGATTTCTGAGGTCTCTAAGAGGGCTCATGTAGATAGGAAAAAGGAGCAGAGGTCCTCGCGGTCTTaGGAGGCCATCCTGAACAGG +
Preference number: 5 (lower is better)
Translates to: LQISEVSKRAHVDRKKEQRSSRS*EAILNR
Trigger: CCTGTTCAGGATGGCCTCCAAAGACCGCGAGGACCT...CTGCTCCTTTTTCCTATCTACATGAGCCCTCTTAGAGACCTCAGAAATCTGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CAA 90 bp CCCGGAATCACAAGTCTGAAAAGGGAACCACAGATAAAAACTATGATGATCAGAAGGTCCTCGCGGTCTTaGGAGGCCATCCTGAACAGG +
Preference number: 5 (lower is better)
Translates to: PGITSLKREPQIKTMMIRRSSRS*EAILNR
Trigger: CCTGTTCAGGATGGCCTCCAAAGACCGCGAGGACCT...TCTGATCATCATAGTTTTTATCTGTGGTTCCCTTTTCAGACTTGTGATTCCGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378126.4
CDS-3UTR CAA 90 bp CATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCATTAGGTCCTCGCGGTCTTaGGAGGCCATCCTGAACAGG +
Preference number: 5 (lower is better)
Translates to: HGRDLPLLQKLAKWLVSIRSSRS*EAILNR
Trigger: CCTGTTCAGGATGGCCTCCAAAGACCGCGAGGACCT...AATGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CAA 90 bp CCTCAATGGTTTAAAAGGGGGACAATAAATGAACACTATTGCCTCCCGGAATCACGGGAGGAGCAGACATaGCTTTCCCAATCTATCCTC +
Preference number: 5 (lower is better)
Translates to: PQWFKRGTINEHYCLPESREEQT*LSQSIL
Trigger: GAGGATAGATTGGGAAAGCAATGTCTGCTCCTCCCG...TGATTCCGGGAGGCAATAGTGTTCATTTATTGTCCCCCTTTTAAACCATTGAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378126.4
CDS-3UTR CAA 90 bp CATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCATTCGGGAGGAGCAGACATaGCTTTCCCAATCTATCCTC +
Preference number: 5 (lower is better)
Translates to: HGRDLPLLQKLAKWLVSIREEQT*LSQSIL
Trigger: GAGGATAGATTGGGAAAGCAATGTCTGCTCCTCCCG...AATGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CAA 90 bp CCTCAATGGTTTAAAAGGGGGACAATAAATGAACACTATTGCCTCCCGGAATCAGTAAATCAGCACTCTTaGTTCCTCTACCGGGAACAA +
Preference number: 5 (lower is better)
Translates to: PQWFKRGTINEHYCLPESVNQHS*FLYREQ
Trigger: TTGTTCCCGGTAGAGGAACAAAGAGTGCTGATTTAC...TGATTCCGGGAGGCAATAGTGTTCATTTATTGTCCCCCTTTTAAACCATTGAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378126.4
CDS-3UTR CAA 90 bp CTACATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCGTAAATCAGCACTCTTaGTTCCTCTACCGGGAACAA +
Preference number: 5 (lower is better)
Translates to: LHGRDLPLLQKLAKWLVSVNQHS*FLYREQ
Trigger: TTGTTCCCGGTAGAGGAACAAAGAGTGCTGATTTAC...GGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATGTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS-3UTR CAA 90 bp CATGGGAGAGATTTGCCATTATTACAAAAACTGGCTAAGTGGCTTGTTTCCATTGTAAATCAGCACTCTTaGTTCCTCTACCGGGAACAA +
Preference number: 5 (lower is better)
Translates to: HGRDLPLLQKLAKWLVSIVNQHS*FLYREQ
Trigger: TTGTTCCCGGTAGAGGAACAAAGAGTGCTGATTTAC...AATGGAAACAAGCCACTTAGCCAGTTTTTGTAATAATGGCAAATCTCTCCCATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000527624.1
ENST00000529310.6
CDS CCA 72 bp CTGCTCTCAGGGAGGCAGAGTAACGCCAGTCAGGGTTaGGCTGTCGTGGCTGAAACTGCAGCAGCTCTAGCT +
Preference number: 6 (lower is better)
Translates to: LLSGRQSNASQG*AVVAETAAALA
Trigger: AGCTAGAGCTGCTGCAGTTTCAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000527624.1
CDS CCA 72 bp CTGCTCTCAGGGAGGCAGAGTAACGCCAGTCAGGGTTaGGCTGTCGTGGTTTGGCATCATGATCTTCATTTA +
Preference number: 6 (lower is better)
Translates to: LLSGRQSNASQG*AVVVWHHDLHL
Trigger: TAAATGAAGATCATGATGCCAAACCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000529310.6