Pregenerated sensors for PCDHA2 (Homo sapiens)
Ensembl gene IDs: ENSG00000204969Ensembl transcript IDs: ENST00000378132.2, ENST00000520672.2, ENST00000526136.2
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | GCTTTACGCTCCCTCTCTATTGAAGAACTACACTCACACAAACACACACACACACTAACACGGTGGCCGTaGCTGTCAACGCTGGTTCGC | + |
|
Preference number: 4 (lower is better) Translates to: ALRSLSIEELHSHKHTHTLTRWP*LSTLVR Trigger: GCGAACCAGCGTTGACAGCCACGGCCACCGTGTTAG...TGTGTGTGTGTGTTTGTGTGAGTGTAGTTCTTCAATAGAGAGGGAGCGTAAAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR GCA 90 bp | TCCCTCTCTATTGAAGAACTACACTCACACAAACACACACACACAAAAACCAAACACCAGCTCACTCACTaGGCCAGCAGCGGTGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: SLSIEELHSHKHTHTKTKHQLTH*ASSGAS Trigger: GCTGGCACCGCTGCTGGCGCAGTGAGTGAGCTGGTG...TTTGGTTTTTGTGTGTGTGTGTTTGTGTGAGTGTAGTTCTTCAATAGAGAGGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR TCA 90 bp | TCTGAATCAAACAGAAACCAGAGTACTTTCACTATGTGGGGACCCAAACTATATGCGGAGTCTGGACCTTaGGATAAGCTAGGGCTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: SESNRNQSTFTMWGPKLYAESGP*DKLGLK Trigger: CTTCAGCCCTAGCTTATCTCAAGGTCCAGACTCCGC...ATATAGTTTGGGTCCCCACATAGTGAAAGTACTCTGGTTTCTGTTTGATTCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR GCA 90 bp | GCTTTACGCTCCCTCTCTATTGAAGAACTACACTCACACAAACACACACACACACTGTTAAAGTCCTGCTaGTTCTCTTATTCCTCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: ALRSLSIEELHSHKHTHTLLKSC*FSYSSA Trigger: AGCGGAGGAATAAGAGAAGCAGCAGGACTTTAACAG...TGTGTGTGTGTGTTTGTGTGAGTGTAGTTCTTCAATAGAGAGGGAGCGTAAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR CCA 90 bp | AAACAGAAACCAGAGTACTTTCACTATGTGGGGACCCAAACTATATTTTTACAAACGACACTAACACGGTaGCCGTGGCTGTCAACGCTG | + |
|
Preference number: 4 (lower is better) Translates to: KQKPEYFHYVGTQTIFLQTTLTR*PWLSTL Trigger: CAGCGTTGACAGCCACGGCCACCGTGTTAGTGTCGT...TTGTAAAAATATAGTTTGGGTCCCCACATAGTGAAAGTACTCTGGTTTCTGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR TCA 90 bp | TCCCTCTCTATTGAAGAACTACACTCACACAAACACACACACACAAAAACCAAAACCTTAATAAGTATTTaGACGGTGCCCGTGAGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: SLSIEELHSHKHTHTKTKTLISI*TVPVSS Trigger: TGAGCTCACGGGCACCGTTCAAATACTTATTAAGGT...TTTGGTTTTTGTGTGTGTGTGTTTGTGTGAGTGTAGTTCTTCAATAGAGAGGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR TCA 90 bp | TCCCTCTCTATTGAAGAACTACACTCACACAAACACACACACACAAAAACCAAACACATCACTACCGAGTaGATACACAATCTCGCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: SLSIEELHSHKHTHTKTKHITTE*IHNLAV Trigger: AACAGCGAGATTGTGTATTCACTCGGTAGTGATGTG...TTTGGTTTTTGTGTGTGTGTGTTTGTGTGAGTGTAGTTCTTCAATAGAGAGGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR GCA 90 bp | TCTGAATCAAACAGAAACCAGAGTACTTTCACTATGTGGGGACCCAAACTATATGGTTCCTTTGTCAGTTaGAGTGACCTGAATCTCGTA | + |
|
Preference number: 4 (lower is better) Translates to: SESNRNQSTFTMWGPKLYGSFVS*SDLNLV Trigger: TACGAGATTCAGGTCACTGCAACTGACAAAGGAACC...ATATAGTTTGGGTCCCCACATAGTGAAAGTACTCTGGTTTCTGTTTGATTCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR TCA 90 bp | ACAGAAACCAGAGTACTTTCACTATGTGGGGACCCAAACTATATTTTTACAAAAAGAATCAAGCAGCCTTaGTTCGGGAAACCGGATAGT | + |
|
Preference number: 4 (lower is better) Translates to: TETRVLSLCGDPNYIFTKRIKQP*FGKPDS Trigger: ACTATCCGGTTTCCCGAATCAAGGCTGCTTGATTCT...TTTTGTAAAAATATAGTTTGGGTCCCCACATAGTGAAAGTACTCTGGTTTCTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR TCA 90 bp | AAACAGAAACCAGAGTACTTTCACTATGTGGGGACCCAAACTATATTTTTACAAAAAACTCACTGGAGCTaGGCTTGTAGGAGAGAAGAG | + |
|
Preference number: 4 (lower is better) Translates to: KQKPEYFHYVGTQTIFLQKTHWS*ACRREE Trigger: CTCTTCTCTCCTACAAGCTCAGCTCCAGTGAGTTTT...TTGTAAAAATATAGTTTGGGTCCCCACATAGTGAAAGTACTCTGGTTTCTGTTT 40% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR TCA 90 bp | TCCCTCTCTATTGAAGAACTACACTCACACAAACACACACACACAAAAACCAAAAGTTCTGATTTCCCCTaGGATGGGATCTATGGTAAA | + |
|
Preference number: 4 (lower is better) Translates to: SLSIEELHSHKHTHTKTKSSDFP*DGIYGK Trigger: TTTACCATAGATCCCATCTCAGGGGAAATCAGAACT...TTTGGTTTTTGTGTGTGTGTGTTTGTGTGAGTGTAGTTCTTCAATAGAGAGGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR TCA 90 bp | AAACAGAAACCAGAGTACTTTCACTATGTGGGGACCCAAACTATATTTTTACAACTTTGTCAGTTGCAGTaGCCTGAATCTCGTAGGACT | + |
|
Preference number: 4 (lower is better) Translates to: KQKPEYFHYVGTQTIFLQLCQLQ*PESRRT Trigger: AGTCCTACGAGATTCAGGTCACTGCAACTGACAAAG...TTGTAAAAATATAGTTTGGGTCCCCACATAGTGAAAGTACTCTGGTTTCTGTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR CCA 90 bp | TCTGAATCAAACAGAAACCAGAGTACTTTCACTATGTGGGGACCCAAACTATATAGTCTTTACTGTCATTaGAAATATTGGCGGGTTGTC | + |
|
Preference number: 4 (lower is better) Translates to: SESNRNQSTFTMWGPKLYSLYCH*KYWRVV Trigger: GACAACCCGCCAATATTTCCAATGACAGTAAAGACT...ATATAGTTTGGGTCCCCACATAGTGAAAGTACTCTGGTTTCTGTTTGATTCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR CCA 90 bp | ACAGAAACCAGAGTACTTTCACTATGTGGGGACCCAAACTATATTTTTACAAAAAAGCGTTCTCTGAGATaGGAAGTGAGAGAGACGTTA | + |
|
Preference number: 4 (lower is better) Translates to: TETRVLSLCGDPNYIFTKKRSLR*EVRETL Trigger: TAACGTCTCTCTCACTTCCCATCTCAGAGAACGCTT...TTTTGTAAAAATATAGTTTGGGTCCCCACATAGTGAAAGTACTCTGGTTTCTGT 39% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR TCA 90 bp | TCCCTCTCTATTGAAGAACTACACTCACACAAACACACACACACAAAAACCAAAGCTGGATTTGAAGATTaGAGTTCCATATCTTTCCTA | + |
|
Preference number: 4 (lower is better) Translates to: SLSIEELHSHKHTHTKTKAGFED*SSISFL Trigger: TAGGAAAGATATGGAACTTCAATCTTCAAATCCAGC...TTTGGTTTTTGTGTGTGTGTGTTTGTGTGAGTGTAGTTCTTCAATAGAGAGGGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR GCA 90 bp | ACAGAAACCAGAGTACTTTCACTATGTGGGGACCCAAACTATATTTTTACAAAATCTCTGTTAAAGTCCTaGTGCTTCTCTTATTCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: TETRVLSLCGDPNYIFTKSLLKS*CFSYSS Trigger: GGAGGAATAAGAGAAGCAGCAGGACTTTAACAGAGA...TTTTGTAAAAATATAGTTTGGGTCCCCACATAGTGAAAGTACTCTGGTTTCTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR CCA 90 bp | TCCCTCTCTATTGAAGAACTACACTCACACAAACACACACACACAAAAACCAAAAGTACTTTCACTATGTaGGGACCCAAACTATATTTT | + |
|
Preference number: 4 (lower is better) Translates to: SLSIEELHSHKHTHTKTKSTFTM*GPKLYF Trigger: AAAATATAGTTTGGGTCCCCACATAGTGAAAGTACT...TTTGGTTTTTGTGTGTGTGTGTTTGTGTGAGTGTAGTTCTTCAATAGAGAGGGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR TCA 90 bp | AAACAGAAACCAGAGTACTTTCACTATGTGGGGACCCAAACTATATTTTTACAACTGGTGTGTTATCATTaGTGTCCACAAGTTTTAATG | + |
|
Preference number: 4 (lower is better) Translates to: KQKPEYFHYVGTQTIFLQLVCYH*CPQVLM Trigger: CATTAAAACTTGTGGACATCAATGATAACACACCAG...TTGTAAAAATATAGTTTGGGTCCCCACATAGTGAAAGTACTCTGGTTTCTGTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR CCA 90 bp | ACAGAAACCAGAGTACTTTCACTATGTGGGGACCCAAACTATATTTTTACAAAAATTTTAATGTACAGATaGGGAATGCAGCAGAATAGA | + |
|
Preference number: 4 (lower is better) Translates to: TETRVLSLCGDPNYIFTKILMYR*GMQQNR Trigger: TCTATTCTGCTGCATTCCCCATCTGTACATTAAAAT...TTTTGTAAAAATATAGTTTGGGTCCCCACATAGTGAAAGTACTCTGGTTTCTGT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS TCA 90 bp | TATGGTAAACTTAGTCTGTATAGTGGAGGACACATCACTACCGAGTaGATACACAATCTCGCTGTTCGGTCCTTCATCTGCATCAGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: YGKLSLYSGGHITTE*IHNLAVRSFICIRS Trigger: GCTTCTGATGCAGATGAAGGACCGAACAGCGAGATTGTGTATTCACTCGGTAGTGATGTGTCCTCCACTATACAGACTAAGTTTACCATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000378132.2 ENST00000520672.2 ENST00000526136.2 |
||
| CDS-3UTR CAA 90 bp | GCTTTACGCTCCCTCTCTATTGAAGAACTACACTCACACAAACACACACACACATACAATGTCCTGACATaGAAGGGGTTCCTTTGTCAG | + |
|
Preference number: 5 (lower is better) Translates to: ALRSLSIEELHSHKHTHTYNVLT*KGFLCQ Trigger: CTGACAAAGGAACCCCTTCAATGTCAGGACATTGTA...TGTGTGTGTGTGTTTGTGTGAGTGTAGTTCTTCAATAGAGAGGGAGCGTAAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR CAA 90 bp | GCTTTACGCTCCCTCTCTATTGAAGAACTACACTCACACAAACACACACACACATACGCTCCCTCTCTATaGAAGAACTACACTCACACA | + |
|
Preference number: 5 (lower is better) Translates to: ALRSLSIEELHSHKHTHTYAPSL*KNYTHT Trigger: TGTGTGAGTGTAGTTCTTCAATAGAGAGGGAGCGTA...TGTGTGTGTGTGTTTGTGTGAGTGTAGTTCTTCAATAGAGAGGGAGCGTAAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR CAA 90 bp | TCCCTCTCTATTGAAGAACTACACTCACACAAACACACACACACAAAAACCAAAGTGAGAGAGACGTTATaGAGACTTCTGGTGTGTTAT | + |
|
Preference number: 5 (lower is better) Translates to: SLSIEELHSHKHTHTKTKVRETL*RLLVCY Trigger: ATAACACACCAGAAGTCTCAATAACGTCTCTCTCAC...TTTGGTTTTTGTGTGTGTGTGTTTGTGTGAGTGTAGTTCTTCAATAGAGAGGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR CAA 90 bp | TCTGAATCAAACAGAAACCAGAGTACTTTCACTATGTGGGGACCCAAACTATATCGCTTAGTTCATCATTaGCCTGTATATCTAGGAAGA | + |
|
Preference number: 5 (lower is better) Translates to: SESNRNQSTFTMWGPKLYRLVHH*PVYLGR Trigger: TCTTCCTAGATATACAGGCAAATGATGAACTAAGCG...ATATAGTTTGGGTCCCCACATAGTGAAAGTACTCTGGTTTCTGTTTGATTCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR CAA 90 bp | ACAGAAACCAGAGTACTTTCACTATGTGGGGACCCAAACTATATTTTTACAAAATACCTTAATAAGTATTaGAACGGTGCCCGTGAGCTC | + |
|
Preference number: 5 (lower is better) Translates to: TETRVLSLCGDPNYIFTKYLNKY*NGAREL Trigger: GAGCTCACGGGCACCGTTCAAATACTTATTAAGGTA...TTTTGTAAAAATATAGTTTGGGTCCCCACATAGTGAAAGTACTCTGGTTTCTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR CAA 90 bp | TCCCTCTCTATTGAAGAACTACACTCACACAAACACACACACACAAAAACCAAAAGAGGCAAGCTGGATTaGAAGATTGAAGTTCCATAT | + |
|
Preference number: 5 (lower is better) Translates to: SLSIEELHSHKHTHTKTKRGKLD*KIEVPY Trigger: ATATGGAACTTCAATCTTCAAATCCAGCTTGCCTCT...TTTGGTTTTTGTGTGTGTGTGTTTGTGTGAGTGTAGTTCTTCAATAGAGAGGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR CAA 90 bp | ACAGAAACCAGAGTACTTTCACTATGTGGGGACCCAAACTATATTTTTACAAAACCACTAAGGTCCCATTaGCCGTATTCTCTAACAATT | + |
|
Preference number: 5 (lower is better) Translates to: TETRVLSLCGDPNYIFTKPLRSH*PYSLTI Trigger: AATTGTTAGAGAATACGGCAAATGGGACCTTAGTGG...TTTTGTAAAAATATAGTTTGGGTCCCCACATAGTGAAAGTACTCTGGTTTCTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR CAA 90 bp | TCCCTCTCTATTGAAGAACTACACTCACACAAACACACACACACAAAAACCAAATCTTTGCCAAGAGTCTaGTTAGACAATAGTTTCAAG | + |
|
Preference number: 5 (lower is better) Translates to: SLSIEELHSHKHTHTKTKSLPRV*LDNSFK Trigger: CTTGAAACTATTGTCTAACAAGACTCTTGGCAAAGA...TTTGGTTTTTGTGTGTGTGTGTTTGTGTGAGTGTAGTTCTTCAATAGAGAGGGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS-3UTR CAA 90 bp | ACAGAAACCAGAGTACTTTCACTATGTGGGGACCCAAACTATATTTTTACAAAAGTCTTCAAAATGTCTTaGCCAAGAGTCTTGTTAGAC | + |
|
Preference number: 5 (lower is better) Translates to: TETRVLSLCGDPNYIFTKVFKMS*PRVLLD Trigger: GTCTAACAAGACTCTTGGCAAAGACATTTTGAAGAC...TTTTGTAAAAATATAGTTTGGGTCCCCACATAGTGAAAGTACTCTGGTTTCTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||
| CDS CCA 72 bp | CTGCTCTCAGGGAGGCAGAGTAACGCCAGTCAGGGTTaGGCTGTCGTGGCTTTCCTACGTATTCTGATTCTG | + |
|
Preference number: 6 (lower is better) Translates to: LLSGRQSNASQG*AVVAFLRILIL Trigger: CAGAATCAGAATACGTAGGAAAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000526136.2 |
||
| CDS TCA 72 bp | CTTAGTCTGTATAGTGGAGGACACATCACTACCGAGTaGATACACAATCTCGCTGTTCGGTCCTTCATCTGC | + |
|
Preference number: 6 (lower is better) Translates to: LSLYSGGHITTE*IHNLAVRSFIC Trigger: GCAGATGAAGGACCGAACAGCGAGATTGTGTATTCACTCGGTAGTGATGTGTCCTCCACTATACAGACTAAG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000378132.2 ENST00000520672.2 ENST00000526136.2 |
||
| CDS TCA 72 bp | GACAATAGTTTCAAGAGGCAAGCTGGATTTGAAGATTaGAGTTCCATATCTTTCCTACGTATTCTGATTCTG | + |
|
Preference number: 6 (lower is better) Translates to: DNSFKRQAGFED*SSISFLRILIL Trigger: CAGAATCAGAATACGTAGGAAAGATATGGAACTTCAATCTTCAAATCCAGCTTGCCTCTTGAAACTATTGTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000520672.2 |
||