Pregenerated sensors for PCDHA1 (Homo sapiens)
Ensembl gene IDs: ENSG00000204970Ensembl transcript IDs: ENST00000378133.4, ENST00000394633.7, ENST00000504120.4
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | TTAGTAATACATGCAAGAGGCAGCCCCAGAGTGACCTaGAAGAGTAAAGCTGTGATTGGCAGGTGGCCGATA | + |
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Preference number: 3 (lower is better) Translates to: LVIHARGSPRVT*KSKAVIGRWPI Trigger: TATCGGCCACCTGCCAATCACAGCTTTACTCTTTCAGGTCACTCTGGGGCTGCCTCTTGCATGTATTACTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504120.4 |
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| 3UTR CAA 72 bp | CCAACCTCTCACTGGCGGGGCTGGGAAGCCTCTCCTTaGCGGCGGAGGAGAAAGGAAACTTGGGTCTGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: PTSHWRGWEASP*RRRRKETWVCF Trigger: AAAGCAGACCCAAGTTTCCTTTCTCCTCCGCCGCAAAGGAGAGGCTTCCCAGCCCCGCCAGTGAGAGGTTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504120.4 |
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| 3UTR CAA 72 bp | CGTCACAGCCAACAGACTTTAGGGTCTCCTAAAGCCTaGTCAGTGGGGGTAGTTTTGTCTCCTAGAGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: RHSQQTLGSPKA*SVGVVLSPRGW Trigger: CCACCCTCTAGGAGACAAAACTACCCCCACTGACAAGGCTTTAGGAGACCCTAAAGTCTGTTGGCTGTGACG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000504120.4 |
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| 3UTR CAA 72 bp | GATCACAACCTACAATGTAGCAATGGTTCACATGTGTaGGTAACAAGTTTTACCCCATGCAATCCTGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: DHNLQCSNGSHV*VTSFTPCNPAE Trigger: CTCTGCAGGATTGCATGGGGTAAAACTTGTTACCAACACATGTGAACCATTGCTACATTGTAGGTTGTGATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000504120.4 |
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| CDS CCA 90 bp | GTTCCATTTGCTGTAGTCTCTAACAAGTGGACTCTGTATACGGCCTaGTCAAACAGTGGGGCGTTATCATTAACGTCGAGGACGGTGATC | + |
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Preference number: 5 (lower is better) Translates to: VPFAVVSNKWTLYTA*SNSGALSLTSRTVI Trigger: GATCACCGTCCTCGACGTTAATGATAACGCCCCACTGTTTGACCAGGCCGTATACAGAGTCCACTTGTTAGAGACTACAGCAAATGGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000378133.4 ENST00000394633.7 ENST00000504120.4 |
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| CDS CCA 72 bp | CTGCTCTCAGGGAGGCAGAGTAACGCCAGTCAGGGTTaGGCTGTCGTGGCTGGAACTGCAGCAGCTCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: LLSGRQSNASQG*AVVAGTAAAPA Trigger: AGCTGGAGCTGCTGCAGTTCCAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000394633.7 |
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| CDS CCA 72 bp | CTGCTCTCAGGGAGGCAGAGTAACGCCAGTCAGGGTTaGGCTGTCGTGGATTACCAGAAAGATCCAAATTTG | + |
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Preference number: 6 (lower is better) Translates to: LLSGRQSNASQG*AVVDYQKDPNL Trigger: CAAATTTGGATCTTTCTGGTAATCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504120.4 |
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| CDS CCA 72 bp | GCTGTAGTCTCTAACAAGTGGACTCTGTATACGGCCTaGTCAAACAGTGGGGCGTTATCATTAACGTCGAGG | + |
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Preference number: 6 (lower is better) Translates to: AVVSNKWTLYTA*SNSGALSLTSR Trigger: CCTCGACGTTAATGATAACGCCCCACTGTTTGACCAGGCCGTATACAGAGTCCACTTGTTAGAGACTACAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000378133.4 ENST00000394633.7 ENST00000504120.4 |
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| CDS CCA 72 bp | GTCACTAATGTTCCATTTGCTGTAGTCTCTAACAAGTaGACTCTGTATACGGCCTGGTCAAACAGTGGGGCG | + |
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Preference number: 6 (lower is better) Translates to: VTNVPFAVVSNK*TLYTAWSNSGA Trigger: CGCCCCACTGTTTGACCAGGCCGTATACAGAGTCCACTTGTTAGAGACTACAGCAAATGGAACATTAGTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000378133.4 ENST00000394633.7 ENST00000504120.4 |
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| CDS TCA 72 bp | TACATCCAGCACTTTCACCAAAACCTTACAGTGATTTaGCATCGGAGGACTTCCTTTATCAACTGCCTTTAC | + |
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Preference number: 6 (lower is better) Translates to: YIQHFHQNLTVI*HRRTSFINCLY Trigger: GTAAAGGCAGTTGATAAAGGAAGTCCTCCGATGTCAAATCACTGTAAGGTTTTGGTGAAAGTGCTGGATGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000378133.4 ENST00000394633.7 ENST00000504120.4 |
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| CDS CAA 72 bp | TTACATCCAGCACTTTCACCAAAACCTTACAGTGATTaGACATCGGAGGACTTCCTTTATCAACTGCCTTTA | + |
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Preference number: 6 (lower is better) Translates to: LHPALSPKPYSD*TSEDFLYQLPL Trigger: TAAAGGCAGTTGATAAAGGAAGTCCTCCGATGTCAAATCACTGTAAGGTTTTGGTGAAAGTGCTGGATGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000378133.4 ENST00000394633.7 ENST00000504120.4 |
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