RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCBP2 (Homo sapiens)

Ensembl gene IDs: ENSG00000197111

Ensembl transcript IDs: ENST00000437231.5, ENST00000447282.5, ENST00000455667.7, ENST00000546463.6, ENST00000546652.6, ENST00000547048.5, ENST00000547859.2, ENST00000547987.2, ENST00000550585.5, ENST00000550733.1, ENST00000552980.6, ENST00000553064.6

Found 265 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTGCAGCTTGGTCAACTCTAGAGGTGGTCCCTCCAGGTCAGGGTTaGGGCACATGGACGGGGTGGTGTGGGGAAAGCTCGCACTGTCGC +
Preference number: 1 (lower is better)
Translates to: GAAWSTLEVVPPGQG*GTWTGWCGESSHCR
Trigger: GCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCCTCAACCCTGACCTGGAGGGACCACCTCTAGAGTTGACCAAGCTGCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546652.6
3UTR TCA 90 bp GGGGCTGTCCCAGCCGTAAGTCAGGCTCGAGGGAGACTGATCCCCTaGCCAATTCACCTGATAAACTCTAGGGACACTGGCAGCTGTGGA +
Preference number: 1 (lower is better)
Translates to: GAVPAVSQARGRLIP*PIHLINSRDTGSCG
Trigger: TCCACAGCTGCCAGTGTCCCTAGAGTTTATCAGGTGAATTGGTCAGGGGATCAGTCTCCCTCGAGCCTGACTTACGGCTGGGACAGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR TCA 90 bp ATTCACCTGATAAACTCTAGGGACACTGGCAGCTGTGGAAATGAATaGGGCACAGCCGTAGAGCTGTGGCTAAGGGCAAGCCCCTTCCTG +
Preference number: 1 (lower is better)
Translates to: IHLINSRDTGSCGNE*GTAVELWLRASPFL
Trigger: CAGGAAGGGGCTTGCCCTTAGCCACAGCTCTACGGCTGTGCCTCATTCATTTCCACAGCTGCCAGTGTCCCTAGAGTTTATCAGGTGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR CCA 90 bp GATAAAGAATTCAAGTCAGACCCTGAAACAGGCACTCAGCTGAAATaGCCTAAACCTAAACAAGGGTTACCACTCCCCCACCCCCACCCA +
Preference number: 1 (lower is better)
Translates to: DKEFKSDPETGTQLK*PKPKQGLPLPHPHP
Trigger: TGGGTGGGGGTGGGGGAGTGGTAACCCTTGTTTAGGTTTAGGCCATTTCAGCTGAGTGCCTGTTTCAGGGTCTGACTTGAATTCTTTATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000553064.6
3UTR TCA 90 bp CCCCTCCCCTTCATTCTGGGTAAAGAAGTATGTTCTTTGAATGTATaGCTTGGAAGAGATCCTCATGGTAACCATTCACCAGAGGAATCC +
Preference number: 1 (lower is better)
Translates to: PLPFILGKEVCSLNV*LGRDPHGNHSPEES
Trigger: GGATTCCTCTGGTGAATGGTTACCATGAGGATCTCTTCCAAGTCATACATTCAAAGAACATACTTCTTTACCCAGAATGAAGGGGAGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000553064.6
3UTR TCA 90 bp CCACTTTGCCCCTCCCCTTCATTCTGGGTAAAGAAGTATGTTCTTTaGATGTATGACTTGGAAGAGATCCTCATGGTAACCATTCACCAG +
Preference number: 1 (lower is better)
Translates to: PLCPSPSFWVKKYVL*MYDLEEILMVTIHQ
Trigger: CTGGTGAATGGTTACCATGAGGATCTCTTCCAAGTCATACATTCAAAGAACATACTTCTTTACCCAGAATGAAGGGGAGGGGCAAAGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000553064.6
3UTR TCA 90 bp CTTCCTATTTTTCTCCTTGTTGTTTATAAGTCTGGTCAAGAAAAATaGCGCTGCAGGCAAGCAAGTGTGCTGGCTCAAGCCTGTAGTAAT +
Preference number: 1 (lower is better)
Translates to: LPIFLLVVYKSGQEK*RCRQASVLAQACSN
Trigger: ATTACTACAGGCTTGAGCCAGCACACTTGCTTGCCTGCAGCGTCATTTTTCTTGACCAGACTTATAAACAACAAGGAGAAAAATAGGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000550585.5
3UTR-3UTR TCA 90 bp CGAGCACTTTGGGAGACCAAGGCAGTCGAATCATCGGAAGCTCAGGAGTTGGAGCCTCCAGGTCAGGGTTaGGGCACATGGACGGGGTGG +
Preference number: 2 (lower is better)
Translates to: RALWETKAVESSEAQELEPPGQG*GTWTGW
Trigger: CCACCCCGTCCATGTGCCTCAACCCTGACCTGGAGG...CTCCAACTCCTGAGCTTCCGATGATTCGACTGCCTTGGTCTCCCAAAGTGCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550585.5
3UTR-3UTR GCA 90 bp CGAGCACTTTGGGAGACCAAGGCAGTCGAATCATCGGAAGCTCAGGAGTTGGAGGCAGGCAAGCAAGTGTaGTGGCTCAAGCCTGTAGTA +
Preference number: 2 (lower is better)
Translates to: RALWETKAVESSEAQELEAGKQV*WLKPVV
Trigger: TACTACAGGCTTGAGCCAGCACACTTGCTTGCCTGC...CTCCAACTCCTGAGCTTCCGATGATTCGACTGCCTTGGTCTCCCAAAGTGCTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550585.5
3UTR-3UTR CCA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTATCCTGGTGCCTGATTaGGGTGGGGACTGTCCTACT +
Preference number: 2 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPILVPD*GGDCPT
Trigger: AGTAGGACAGTCCCCACCCCAATCAGGCACCAGGAT...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CCA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTTCCCTGCTTTTATCCTaGTGCCTGATTGGGGTGGGG +
Preference number: 2 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGSLLLS*CLIGVG
Trigger: CCCCACCCCAATCAGGCACCAGGATAAAAGCAGGGA...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CCA 90 bp CAACAACAGAAAGAAGAAAAATTAGCCGGGCATTGTGGAGCGCGCCTATGGTACACTGGGAGCCTGAGGTaGGTGGATTGCTTGAGCTCA +
Preference number: 2 (lower is better)
Translates to: QQQKEEKLAGHCGARLWYTGSLR*VDCLSS
Trigger: TGAGCTCAAGCAATCCACCCACCTCAGGCTCCCAGT...GTACCATAGGCGCGCTCCACAATGCCCGGCTAATTTTTCTTCTTTCTGTTGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550585.5
3UTR-3UTR TCA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTGCTCCGGACTTTATCTaGGGTGTCTGGAGAAGTTCT +
Preference number: 2 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGAPDFI*GVWRSS
Trigger: AGAACTTCTCCAGACACCTCAGATAAAGTCCGGAGC...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR GCA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTGCTGAAGAACCGGGGTaGTGTTTAAGTCCCTGCTTT +
Preference number: 2 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPAEEPG*CLSPCF
Trigger: AAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGC...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR GCA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTGCTGAAGAACCGGGGTaGTGTTTAAGTCCCTGCTTT +
Preference number: 2 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGAEEPG*CLSPCF
Trigger: AAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGC...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR GCA 90 bp CAACAACAGAAAGAAGAAAAATTAGCCGGGCATTGTGGAGCGCGCCTATGGTACCTGAGGTGGGTGGATTaGTTGAGCTCAGGAGTTCGA +
Preference number: 2 (lower is better)
Translates to: QQQKEEKLAGHCGARLWYLRWVD*LSSGVR
Trigger: TCGAACTCCTGAGCTCAAGCAATCCACCCACCTCAG...GTACCATAGGCGCGCTCCACAATGCCCGGCTAATTTTTCTTCTTTCTGTTGTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550585.5
3UTR CAA 90 bp ATCCTCATGGTAACCATTCACCAGAGGAATCCTGGGATGAACACCTaGTTAGCTGCTGCTGGCAAGGTAAGGCCATCTGAGAAGTCAGAT +
Preference number: 2 (lower is better)
Translates to: ILMVTIHQRNPGMNT*LAAAGKVRPSEKSD
Trigger: ATCTGACTTCTCAGATGGCCTTACCTTGCCAGCAGCAGCTAACAAGGTGTTCATCCCAGGATTCCTCTGGTGAATGGTTACCATGAGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
3UTR-3UTR TCA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTTGTGATGGCTCAGGCTaGAGAACCGGGGTGCTGTTT +
Preference number: 2 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFCDGSG*RTGVLF
Trigger: AAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACA...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR-3UTR CCA 90 bp CATGTGATGGCTCAGGCTGAAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTATAGGGCCAACCAAGCATaGAGTCAGGGAAAAATAGGA +
Preference number: 2 (lower is better)
Translates to: HVMAQAEEPGCCLSPCFYRANQA*SQGKIG
Trigger: TCCTATTTTTCCCTGACTCCATGCTTGGTTGGCCCT...ATAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CCA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTAGGGCCAACCAAGCATaGAGTCAGGGAAAAATAGGA +
Preference number: 2 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGRANQA*SQGKIG
Trigger: TCCTATTTTTCCCTGACTCCATGCTTGGTTGGCCCT...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CCA 90 bp TATGCAAGCCTGAACAAGGGGACCAACATTCCCAAGAAACTGGAACCCAGTCAGAGGGCCAACCAAGCATaGAGTCAGGGAAAAATAGGA +
Preference number: 2 (lower is better)
Translates to: YASLNKGTNIPKKLEPSQRANQA*SQGKIG
Trigger: TCCTATTTTTCCCTGACTCCATGCTTGGTTGGCCCT...CTGACTGGGTTCCAGTTTCTTGGGAATGTTGGTCCCCTTGTTCAGGCTTGCATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR TCA 90 bp CATGTGATGGCTCAGGCTGAAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTATGGAATAAAACCCACATaGATCACTGTGGCATCCAGT +
Preference number: 2 (lower is better)
Translates to: HVMAQAEEPGCCLSPCFYGIKPT*ITVASS
Trigger: ACTGGATGCCACAGTGATTCATGTGGGTTTTATTCC...ATAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR TCA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTGGAATAAAACCCACATaGATCACTGTGGCATCCAGT +
Preference number: 2 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGGIKPT*ITVASS
Trigger: ACTGGATGCCACAGTGATTCATGTGGGTTTTATTCC...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR GCA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTACCATTTATCTTCTCTaGCCAAGCCCTGTCTTAAGG +
Preference number: 2 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPTIYLL*PSPVLR
Trigger: CCTTAAGACAGGGCTTGGGCAGAGAAGATAAATGGT...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR GCA 90 bp AGGAATCCTGGGATGAACACCTTGTTAGCTGCTGCTGGCAAGGTAAGGCCATCTCTTCAGGATCTAAACTaGCACAGACTCGTTATCTCT +
Preference number: 2 (lower is better)
Translates to: RNPGMNTLLAAAGKVRPSLQDLN*HRLVIS
Trigger: AGAGATAACGAGTCTGTGGCAGTTTAGATCCTGAAG...AGATGGCCTTACCTTGCCAGCAGCAGCTAACAAGGTGTTCATCCCAGGATTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
3UTR-3UTR TCA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGGGAATAAAACCCACATaGATCACTGTGGCATCCAGT +
Preference number: 2 (lower is better)
Translates to: AYSPRTGKSSESLILNLLGIKPT*ITVASS
Trigger: ACTGGATGCCACAGTGATTCATGTGGGTTTTATTCC...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR TCA 90 bp CATGTGATGGCTCAGGCTGAAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTATCCAAGAAGGGTCCTTTaGGGGATAAAAGGTACAAAA +
Preference number: 2 (lower is better)
Translates to: HVMAQAEEPGCCLSPCFYPRRVL*GIKGTK
Trigger: TTTTGTACCTTTTATCCCTCAAAGGACCCTTCTTGG...ATAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR TCA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTGCTCCGGACTTTATCTaGGGTGTCTGGAGAAGTTCT +
Preference number: 2 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFAPDFI*GVWRSS
Trigger: AGAACTTCTCCAGACACCTCAGATAAAGTCCGGAGC...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR-3UTR TCA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTGGTTTTCTTGATGAATaGATGGGGTACCATACATGG +
Preference number: 2 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPGFLDE*MGYHTW
Trigger: CCATGTATGGTACCCCATTCATTCATCAAGAAAACC...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CCA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTCCACATGAATCACTGTaGCATCCAGTTTCTATTCAC +
Preference number: 2 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPPHESL*HPVSIH
Trigger: GTGAATAGAAACTGGATGCCACAGTGATTCATGTGG...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CCA 90 bp CATGTGATGGCTCAGGCTGAAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTATACATTCCCAAGAAACTaGAACCCAGTCAGACATATG +
Preference number: 2 (lower is better)
Translates to: HVMAQAEEPGCCLSPCFYTFPRN*NPVRHM
Trigger: CATATGTCTGACTGGGTTCCAGTTTCTTGGGAATGT...ATAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CCA 90 bp GCAGCAATTTCAGAGCCTAAAACTCTAGTAGATATTTATCCATTTCCAATCTTCGGCACATGGACGGGGTaGTGTGGGGAAAGCTCGCAC +
Preference number: 2 (lower is better)
Translates to: AAISEPKTLVDIYPFPIFGTWTG*CGESSH
Trigger: GTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCC...GAAGATTGGAAATGGATAAATATCTACTAGAGTTTTAGGCTCTGAAATTGCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000550585.5
3UTR-3UTR CCA 90 bp AAATTAAGATCTCTGTCGTGCCATGTACGATACGCTCCCAAAAACTCAAGCAGCGTAATCCGAGCACTTTaGGAGACCAAGGCAGTCGAA +
Preference number: 2 (lower is better)
Translates to: KLRSLSCHVRYAPKNSSSVIRAL*ETKAVE
Trigger: TTCGACTGCCTTGGTCTCCCAAAGTGCTCGGATTAC...GCTGCTTGAGTTTTTGGGAGCGTATCGTACATGGCACGACAGAGATCTTAATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550585.5
3UTR-3UTR TCA 90 bp CAAAAACTCAAGCAGCCATTCGAGTTTCATTCCAACACCAAATTCAGTAACATCGGTAGGAGGGTTACATaGGCCCAGAAGTCGAGGTTG +
Preference number: 2 (lower is better)
Translates to: QKLKQPFEFHSNTKFSNIGRRVT*AQKSRL
Trigger: CAACCTCGACTTCTGGGCTCATGTAACCCTCCTACC...GATGTTACTGAATTTGGTGTTGGAATGAAACTCGAATGGCTGCTTGAGTTTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550585.5
3UTR-3UTR TCA 90 bp CCCTTTACCCTTCACAGCACACAGTGTACTAAGGTTCTTACTGCGCCAACTTTAAAACAGGCACTCAGCTaGAATGGCCTAAACCTAAAC +
Preference number: 2 (lower is better)
Translates to: PFTLHSTQCTKVLTAPTLKQALS*NGLNLN
Trigger: GTTTAGGTTTAGGCCATTTCAGCTGAGTGCCTGTTT...TAAAGTTGGCGCAGTAAGAACCTTAGTACACTGTGTGCTGTGAAGGGTAAAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000553064.6
3UTR-3UTR TCA 90 bp CCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCCGGAATAAAACCCACATaGATCACTGTGGCATCCAGT +
Preference number: 2 (lower is better)
Translates to: PKKLEPSQTYDQLLNVYAGIKPT*ITVASS
Trigger: ACTGGATGCCACAGTGATTCATGTGGGTTTTATTCC...GGCATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR TCA 90 bp TTCCTTATATTCAGCAAGCAACAAGGCAATAGAAAAGCCAGGGTTGTCTTTATATGTGATGGCTCAGGCTaGAGAACCGGGGTGCTGTTT +
Preference number: 2 (lower is better)
Translates to: FLIFSKQQGNRKARVVFICDGSG*RTGVLF
Trigger: AAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACA...TATAAAGACAACCCTGGCTTTTCTATTGCCTTGTTGCTTGCTGAATATAAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR-3UTR TCA 90 bp CACAGCACACAGTGTACTAAGGTTCTTACTGCGCCAACTTTATTACAGCTAGAAATTCAAGTCAGACCCTaGAACAGGCACTCAGCTGAA +
Preference number: 2 (lower is better)
Translates to: HSTQCTKVLTAPTLLQLEIQVRP*NRHSAE
Trigger: TTCAGCTGAGTGCCTGTTTCAGGGTCTGACTTGAAT...TTCTAGCTGTAATAAAGTTGGCGCAGTAAGAACCTTAGTACACTGTGTGCTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
3UTR-3UTR TCA 90 bp AGAGGACCTTCAGGATCTAAACTGCCACAGACTCGTTATCTCTTTGTGGAAATATACAGGCTTCCTAGCTaGATAGCCACAAGTCACAAG +
Preference number: 2 (lower is better)
Translates to: RGPSGSKLPQTRYLFVEIYRLPS*IATSHK
Trigger: CTTGTGACTTGTGGCTATTCAGCTAGGAAGCCTGTA...TATTTCCACAAAGAGATAACGAGTCTGTGGCAGTTTAGATCCTGAAGGTCCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
3UTR-3UTR GCA 90 bp GCAGCAATTTCAGAGCCTAAAACTCTAGTAGATATTTATCCATTTCCAATCTTCCACTGTCGCTGCCTGTaGTGTACCTGTCCTGACCAC +
Preference number: 2 (lower is better)
Translates to: AAISEPKTLVDIYPFPIFHCRCL*CTCPDH
Trigger: GTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTG...GAAGATTGGAAATGGATAAATATCTACTAGAGTTTTAGGCTCTGAAATTGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550585.5
3UTR-3UTR TCA 90 bp TATGTGCCAGGTACCATGAGAAGTGCTTCGAATATAGCAATTAACAAAATTAAGCCCTGCACTTCAGCCTaGGTGAGACCCTGTCTCAAA +
Preference number: 2 (lower is better)
Translates to: YVPGTMRSASNIAINKIKPCTSA*VRPCLK
Trigger: TTTGAGACAGGGTCTCACTCAGGCTGAAGTGCAGGG...CTTAATTTTGTTAATTGCTATATTCGAAGCACTTCTCATGGTACCTGGCACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550585.5
3UTR-3UTR GCA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTAGACATATGATCAACTaGTTAATGTGTATGCCATGT +
Preference number: 2 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGRHMIN*LMCMPC
Trigger: ACATGGCATACACATTAAGCAGTTGATCATATGTCT...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR GCA 90 bp CATGTGATGGCTCAGGCTGAAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTATAGACATATGATCAACTaGTTAATGTGTATGCCATGT +
Preference number: 2 (lower is better)
Translates to: HVMAQAEEPGCCLSPCFYRHMIN*LMCMPC
Trigger: ACATGGCATACACATTAAGCAGTTGATCATATGTCT...ATAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR GCA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTAGACATATGATCAACTaGTTAATGTGTATGCCATGT +
Preference number: 2 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPRHMIN*LMCMPC
Trigger: ACATGGCATACACATTAAGCAGTTGATCATATGTCT...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CCA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTCCACATGAATCACTGTaGCATCCAGTTTCTATTCAC +
Preference number: 2 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFPHESL*HPVSIH
Trigger: GTGAATAGAAACTGGATGCCACAGTGATTCATGTGG...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR-3UTR CCA 90 bp TTCCTTATATTCAGCAAGCAACAAGGCAATAGAAAAGCCAGGGTTGTCTTTATAAGGGCCAACCAAGCATaGAGTCAGGGAAAAATAGGA +
Preference number: 2 (lower is better)
Translates to: FLIFSKQQGNRKARVVFIRANQA*SQGKIG
Trigger: TCCTATTTTTCCCTGACTCCATGCTTGGTTGGCCCT...TATAAAGACAACCCTGGCTTTTCTATTGCCTTGTTGCTTGCTGAATATAAGGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR-3UTR TCA 90 bp TATGTGCCAGGTACCATGAGAAGTGCTTCGAATATAGCAATTAACAAAATTAAGTCTGGTCAAGAAAAATaGCGCTGCAGGCAAGCAAGT +
Preference number: 2 (lower is better)
Translates to: YVPGTMRSASNIAINKIKSGQEK*RCRQAS
Trigger: ACTTGCTTGCCTGCAGCGTCATTTTTCTTGACCAGA...CTTAATTTTGTTAATTGCTATATTCGAAGCACTTCTCATGGTACCTGGCACATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550585.5
3UTR-3UTR CCA 90 bp CAAAAGGTCCTTCTAAATAGTTGCCTTTCAACTAATGATAGTTCTCTGGGCGAACCACATGAATCACTGTaGCATCCAGTTTCTATTCAC +
Preference number: 2 (lower is better)
Translates to: QKVLLNSCLSTNDSSLGEPHESL*HPVSIH
Trigger: GTGAATAGAAACTGGATGCCACAGTGATTCATGTGG...TTCGCCCAGAGAACTATCATTAGTTGAAAGGCAACTATTTAGAAGGACCTTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550585.5
3UTR-3UTR TCA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGGGAATAAAACCCACATaGATCACTGTGGCATCCAGT +
Preference number: 2 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKGIKPT*ITVASS
Trigger: ACTGGATGCCACAGTGATTCATGTGGGTTTTATTCC...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR TCA 90 bp TTCCTTATATTCAGCAAGCAACAAGGCAATAGAAAAGCCAGGGTTGTCTTTATACCAAGAAGGGTCCTTTaGGGGATAAAAGGTACAAAA +
Preference number: 2 (lower is better)
Translates to: FLIFSKQQGNRKARVVFIPRRVL*GIKGTK
Trigger: TTTTGTACCTTTTATCCCTCAAAGGACCCTTCTTGG...TATAAAGACAACCCTGGCTTTTCTATTGCCTTGTTGCTTGCTGAATATAAGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR-3UTR TCA 90 bp TTCCTTATATTCAGCAAGCAACAAGGCAATAGAAAAGCCAGGGTTGTCTTTATAGGTTTTCTTGATGAATaGATGGGGTACCATACATGG +
Preference number: 2 (lower is better)
Translates to: FLIFSKQQGNRKARVVFIGFLDE*MGYHTW
Trigger: CCATGTATGGTACCCCATTCATTCATCAAGAAAACC...TATAAAGACAACCCTGGCTTTTCTATTGCCTTGTTGCTTGCTGAATATAAGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR-3UTR TCA 90 bp GGAAGTGGTAAAATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAACCAAGAAGGGTCCTTTaGGGGATAAAAGGTACAAAA +
Preference number: 2 (lower is better)
Translates to: GSGKIEENILTGIKASIQPRRVL*GIKGTK
Trigger: TTTTGTACCTTTTATCCCTCAAAGGACCCTTCTTGG...TTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATTTTACCACTTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR TCA 90 bp TTCCTTATATTCAGCAAGCAACAAGGCAATAGAAAAGCCAGGGTTGTCTTTATACCCTGTGAAAAACCTTaGAATATAACACTCCATGCA +
Preference number: 2 (lower is better)
Translates to: FLIFSKQQGNRKARVVFIPCEKP*NITLHA
Trigger: TGCATGGAGTGTTATATTTCAAGGTTTTTCACAGGG...TATAAAGACAACCCTGGCTTTTCTATTGCCTTGTTGCTTGCTGAATATAAGGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR-3UTR CCA 90 bp GGAAGTGGTAAAATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAACCACATGAATCACTGTaGCATCCAGTTTCTATTCAC +
Preference number: 2 (lower is better)
Translates to: GSGKIEENILTGIKASIQPHESL*HPVSIH
Trigger: GTGAATAGAAACTGGATGCCACAGTGATTCATGTGG...TTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATTTTACCACTTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CCA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGCCACATGAATCACTGTaGCATCCAGTTTCTATTCAC +
Preference number: 2 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKPHESL*HPVSIH
Trigger: GTGAATAGAAACTGGATGCCACAGTGATTCATGTGG...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR TCA 72 bp CCAGCCGTAAGTCAGGCTCGAGGGAGACTGATCCCCTaGCCAATTCACCTGATAAACTCTAGGGACACTGGC +
Preference number: 3 (lower is better)
Translates to: PAVSQARGRLIP*PIHLINSRDTG
Trigger: GCCAGTGTCCCTAGAGTTTATCAGGTGAATTGGTCAGGGGATCAGTCTCCCTCGAGCCTGACTTACGGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR-3UTR CAA 90 bp GCCTTTCAACTAATGATAGTTCTCTGGGCGAAGCAAAAGCCCCACAAGTATCACCCCTCCAGGTCAGGGTaGAGGCACATGGACGGGGTG +
Preference number: 3 (lower is better)
Translates to: AFQLMIVLWAKQKPHKYHPSRSG*RHMDGV
Trigger: CACCCCGTCCATGTGCCTCAACCCTGACCTGGAGGG...GTGATACTTGTGGGGCTTTTGCTTCGCCCAGAGAACTATCATTAGTTGAAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000550585.5
3UTR TCA 72 bp ATAAACTCTAGGGACACTGGCAGCTGTGGAAATGAATaGGGCACAGCCGTAGAGCTGTGGCTAAGGGCAAGC +
Preference number: 3 (lower is better)
Translates to: INSRDTGSCGNE*GTAVELWLRAS
Trigger: GCTTGCCCTTAGCCACAGCTCTACGGCTGTGCCTCATTCATTTCCACAGCTGCCAGTGTCCCTAGAGTTTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR TCA 72 bp ATGGTTAAGATAAAGCCTTGGGCTCCGGACTTTATCTaGGGTGTCTGGAGAAGTTCTCCTGCCCCTCCACTT +
Preference number: 3 (lower is better)
Translates to: MVKIKPWAPDFI*GVWRSSPAPPL
Trigger: AAGTGGAGGGGCAGGAGAACTTCTCCAGACACCTCAGATAAAGTCCGGAGCCCAAGGCTTTATCTTAACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR TCA 72 bp GAGGTTAGGAGACTGATAGCATGTGATGGCTCAGGCTaGAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTA +
Preference number: 3 (lower is better)
Translates to: EVRRLIACDGSG*RTGVLFKSLLL
Trigger: TAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATGCTATCAGTCTCCTAACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR CCA 72 bp ACAACAACAGAAAGAAGAAAAATTAGCCGGGCATTGTaGAGCGCGCCTATGGTACCAGGTACTCAGGAGGCT +
Preference number: 3 (lower is better)
Translates to: TTTERRKISRAL*SAPMVPGTQEA
Trigger: AGCCTCCTGAGTACCTGGTACCATAGGCGCGCTCCACAATGCCCGGCTAATTTTTCTTCTTTCTGTTGTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550585.5
3UTR-3UTR CAA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTATGCAGGCCCAGCTGTaGAGGGTTTTCTTGATGAAT +
Preference number: 3 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPMQAQL*RVFLMN
Trigger: ATTCATCAAGAAAACCCTCAACAGCTGGGCCTGCAT...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CAA 90 bp CATGTGATGGCTCAGGCTGAAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTATCCCAAGAAGGGTCCTTaGAGGGATAAAAGGTACAAA +
Preference number: 3 (lower is better)
Translates to: HVMAQAEEPGCCLSPCFYPKKGP*RDKRYK
Trigger: TTTGTACCTTTTATCCCTCAAAGGACCCTTCTTGGG...ATAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CAA 90 bp TATGCAAGCCTGAACAAGGGGACCAACATTCCCAAGAAACTGGAACCCAGTCAGCCCAAGAAGGGTCCTTaGAGGGATAAAAGGTACAAA +
Preference number: 3 (lower is better)
Translates to: YASLNKGTNIPKKLEPSQPKKGP*RDKRYK
Trigger: TTTGTACCTTTTATCCCTCAAAGGACCCTTCTTGGG...CTGACTGGGTTCCAGTTTCTTGGGAATGTTGGTCCCCTTGTTCAGGCTTGCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CAA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTCCCAAGAAGGGTCCTTaGAGGGATAAAAGGTACAAA +
Preference number: 3 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPPKKGP*RDKRYK
Trigger: TTTGTACCTTTTATCCCTCAAAGGACCCTTCTTGGG...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CAA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCTGTTGAGGGTTTTCTaGATGAATGAATGGGGTACC +
Preference number: 3 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGLLRVF*MNEWGT
Trigger: GGTACCCCATTCATTCATCAAGAAAACCCTCAACAG...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CAA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTCTGTTGAGGGTTTTCTaGATGAATGAATGGGGTACC +
Preference number: 3 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPLLRVF*MNEWGT
Trigger: GGTACCCCATTCATTCATCAAGAAAACCCTCAACAG...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CAA 90 bp CATGTGATGGCTCAGGCTGAAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTATTGCCCCTCCACTTTTTaGCATCTACTCTCACTAAAT +
Preference number: 3 (lower is better)
Translates to: HVMAQAEEPGCCLSPCFYCPSTF*HLLSLN
Trigger: ATTTAGTGAGAGTAGATGCAAAAAAGTGGAGGGGCA...ATAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR TCA 72 bp TCAAAAAGCCCATGTCAGTTATACAGGCTTCCTAGCTaGATAGCCACAAGTCACAAGCCCCCAACCCTTTAC +
Preference number: 3 (lower is better)
Translates to: SKSPCQLYRLPS*IATSHKPPTLY
Trigger: GTAAAGGGTTGGGGGCTTGTGACTTGTGGCTATTCAGCTAGGAAGCCTGTATAACTGACATGGGCTTTTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000553064.6
3UTR-3UTR CAA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTATGCAGGCCCAGCTGTaGAGGGTTTTCTTGATGAAT +
Preference number: 3 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFMQAQL*RVFLMN
Trigger: ATTCATCAAGAAAACCCTCAACAGCTGGGCCTGCAT...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR TCA 72 bp TTTCTCCTTGTTGTTTATAAGTCTGGTCAAGAAAAATaGCGCTGCAGGCAAGCAAGTGTGCTGGCTCAAGCC +
Preference number: 3 (lower is better)
Translates to: FLLVVYKSGQEK*RCRQASVLAQA
Trigger: GGCTTGAGCCAGCACACTTGCTTGCCTGCAGCGTCATTTTTCTTGACCAGACTTATAAACAACAAGGAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550585.5
3UTR TCA 72 bp AAGAATTCAAGTCAGACCCTGAAACAGGCACTCAGCTaGAATGGCCTAAACCTAAACAAGGGTTACCACTCC +
Preference number: 3 (lower is better)
Translates to: KNSSQTLKQALS*NGLNLNKGYHS
Trigger: GGAGTGGTAACCCTTGTTTAGGTTTAGGCCATTTCAGCTGAGTGCCTGTTTCAGGGTCTGACTTGAATTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
3UTR-3UTR CAA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTTGCCCCTCCACTTTTTaGCATCTACTCTCACTAAAT +
Preference number: 3 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFCPSTF*HLLSLN
Trigger: ATTTAGTGAGAGTAGATGCAAAAAAGTGGAGGGGCA...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR-3UTR CAA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATCCCAAGAAGGGTCCTTaGAGGGATAAAAGGTACAAA +
Preference number: 3 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYPKKGP*RDKRYK
Trigger: TTTGTACCTTTTATCCCTCAAAGGACCCTTCTTGGG...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
3UTR-3UTR CAA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTCTAATCCTCAATCTTTaGGGCACAAGTTTTATAAGG +
Preference number: 3 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFLILNL*GTSFIR
Trigger: CCTTATAAAACTTGTGCCCAAAAGATTGAGGATTAG...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR-3UTR CAA 90 bp TTCCTTATATTCAGCAAGCAACAAGGCAATAGAAAAGCCAGGGTTGTCTTTATACTGTTGAGGGTTTTCTaGATGAATGAATGGGGTACC +
Preference number: 3 (lower is better)
Translates to: FLIFSKQQGNRKARVVFILLRVF*MNEWGT
Trigger: GGTACCCCATTCATTCATCAAGAAAACCCTCAACAG...TATAAAGACAACCCTGGCTTTTCTATTGCCTTGTTGCTTGCTGAATATAAGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
3UTR-3UTR CAA 90 bp GAGGACCTTCAGGATCTAAACTGCCACAGACTCGTTATCTCTTTGTGGAAATATGACTATAAAATTCACTaGGGATTCAAAAAGCCCATG +
Preference number: 3 (lower is better)
Translates to: EDLQDLNCHRLVISLWKYDYKIH*GFKKPM
Trigger: CATGGGCTTTTTGAATCCCAAGTGAATTTTATAGTC...ATATTTCCACAAAGAGATAACGAGTCTGTGGCAGTTTAGATCCTGAAGGTCCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000553064.6
3UTR-3UTR CAA 90 bp TTCCTTATATTCAGCAAGCAACAAGGCAATAGAAAAGCCAGGGTTGTCTTTATATGCCCCTCCACTTTTTaGCATCTACTCTCACTAAAT +
Preference number: 3 (lower is better)
Translates to: FLIFSKQQGNRKARVVFICPSTF*HLLSLN
Trigger: ATTTAGTGAGAGTAGATGCAAAAAAGTGGAGGGGCA...TATAAAGACAACCCTGGCTTTTCTATTGCCTTGTTGCTTGCTGAATATAAGGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR CCA 90 bp GGCACATGGACGGGGTGGTGTGGGGAAAGCTCGCACTGTCGCTGCCTGTGCTGTGGCACATGGACGGGGTaGTGTGGGGAAAGCTCGCAC +
Preference number: 4 (lower is better)
Translates to: GTWTGWCGESSHCRCLCCGTWTG*CGESSH
Trigger: GTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCC...ACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000546652.6
ENST00000550585.5
CDS-3UTR GCA 90 bp GGCACATGGACGGGGTGGTGTGGGGAAAGCTCGCACTGTCGCTGCCTGTGCTGTCACTGTCGCTGCCTGTaGTGTACCTGTCCTGACCAC +
Preference number: 4 (lower is better)
Translates to: GTWTGWCGESSHCRCLCCHCRCL*CTCPDH
Trigger: GTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTG...ACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000546652.6
ENST00000550585.5
CDS-3UTR TCA 90 bp GGCACATGGACGGGGTGGTGTGGGGAAAGCTCGCACTGTCGCTGCCTGTGCTGTCCCTGCACTTCAGCCTaGGTGAGACCCTGTCTCAAA +
Preference number: 4 (lower is better)
Translates to: GTWTGWCGESSHCRCLCCPCTSA*VRPCLK
Trigger: TTTGAGACAGGGTCTCACTCAGGCTGAAGTGCAGGG...ACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR CCA 90 bp GGCACATGGACGGGGTGGTGTGGGGAAAGCTCGCACTGTCGCTGCCTGTGCTGTCCAACTGGTGCAGCTTaGTCAACTCTAGAGGTGGTC +
Preference number: 4 (lower is better)
Translates to: GTWTGWCGESSHCRCLCCPTGAA*STLEVV
Trigger: GACCACCTCTAGAGTTGACCAAGCTGCACCAGTTGG...ACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546652.6
CDS-3UTR CCA 90 bp GGCACATGGACGGGGTGGTGTGGGGAAAGCTCGCACTGTCGCTGCCTGTGCTGTGTAATCCGAGCACTTTaGGAGACCAAGGCAGTCGAA +
Preference number: 4 (lower is better)
Translates to: GTWTGWCGESSHCRCLCCVIRAL*ETKAVE
Trigger: TTCGACTGCCTTGGTCTCCCAAAGTGCTCGGATTAC...ACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000546652.6
ENST00000550585.5
CDS-3UTR GCA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTGGAGAGGGCGCAGGCTaGGGCTGCTCCGGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFGEGAG*GCSGCC
Trigger: GCAGCAGCCGGAGCAGCCGCAGCCTGCGCCCTCTCC...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000546463.6
CDS-3UTR CCA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTGGCACATGGACGGGGTaGTGTGGGGAAAGCTCGCAC +
Preference number: 4 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGGTWTG*CGESSH
Trigger: GTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCC...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp CGAGCACTTTGGGAGACCAAGGCAGTCGAATCATCGGAAGCTCAGGAGTTGGAGAAAATTTGGGTGTGGTaGTGGGAGCCTGCAGTCCCG +
Preference number: 4 (lower is better)
Translates to: RALWETKAVESSEAQELEKIWVW*WEPAVP
Trigger: CGGGACTGCAGGCTCCCACCACCACACCCAAATTTT...CTCCAACTCCTGAGCTTCCGATGATTCGACTGCCTTGGTCTCCCAAAGTGCTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR TCA 90 bp CGAGCACTTTGGGAGACCAAGGCAGTCGAATCATCGGAAGCTCAGGAGTTGGAGTGGATTCAATGCCACTaGATCCGGTGTTGCCATGCG +
Preference number: 4 (lower is better)
Translates to: RALWETKAVESSEAQELEWIQCH*IRCCHA
Trigger: CGCATGGCAACACCGGATTCAGTGGCATTGAATCCA...CTCCAACTCCTGAGCTTCCGATGATTCGACTGCCTTGGTCTCCCAAAGTGCTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR GCA 90 bp CCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCCTGCGGCTGCTCCGGCTaGTGCCTCTGCTGGTCTGGG +
Preference number: 4 (lower is better)
Translates to: PKKLEPSQTYDQLLNVYACGCSG*CLCWSG
Trigger: CCCAGACCAGCAGAGGCAGCAGCCGGAGCAGCCGCA...GGCATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000546463.6
CDS-3UTR GCA 90 bp AGAGGACCTTCAGGATCTAAACTGCCACAGACTCGTTATCTCTTTGTGGAAATAGGGGAGGCTGGAGGGTaGGTCGGAGGTCCCCGCTGT +
Preference number: 4 (lower is better)
Translates to: RGPSGSKLPQTRYLFVEIGEAGG*VGGPRC
Trigger: ACAGCGGGGACCTCCGACGCACCCTCCAGCCTCCCC...TATTTCCACAAAGAGATAACGAGTCTGTGGCAGTTTAGATCCTGAAGGTCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR TCA 90 bp CCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCCCCTCCAGGTCAGGGTTaGGGCACATGGACGGGGTGG +
Preference number: 4 (lower is better)
Translates to: PKKLEPSQTYDQLLNVYAPPGQG*GTWTGW
Trigger: CCACCCCGTCCATGTGCCTCAACCCTGACCTGGAGG...GGCATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTAGGCTCGAGGGAGACTaGTCCCCTGACCAATTCACC +
Preference number: 4 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPRLEGD*SPDQFT
Trigger: GGTGAATTGGTCAGGGGATCAGTCTCCCTCGAGCCT...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR GCA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTCACTGTCGCTGCCTGTaGTGTACCTGTCCTGACCAC +
Preference number: 4 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPHCRCL*CTCPDH
Trigger: GTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTG...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000546463.6
ENST00000547859.2
CDS-3UTR GCA 90 bp GACTTGGAAGAGATCCTCATGGTAACCATTCACCAGAGGAATCCTGGGATGAACGATCGTGACGGAGGCTaGCTGGGAGGAGGGTTTAGC +
Preference number: 4 (lower is better)
Translates to: DLEEILMVTIHQRNPGMNDRDGG*LGGGFS
Trigger: GCTAAACCCTCCTCCCAGGCAGCCTCCGTCACGATC...GTTCATCCCAGGATTCCTCTGGTGAATGGTTACCATGAGGATCTCTTCCAAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR CCA 90 bp TATGCAAGCCTGAACAAGGGGACCAACATTCCCAAGAAACTGGAACCCAGTCAGACAGCCGTAGAGCTGTaGCTAAGGGCAAGCCCCTTC +
Preference number: 4 (lower is better)
Translates to: YASLNKGTNIPKKLEPSQTAVEL*LRASPF
Trigger: GAAGGGGCTTGCCCTTAGCCACAGCTCTACGGCTGT...CTGACTGGGTTCCAGTTTCTTGGGAATGTTGGTCCCCTTGTTCAGGCTTGCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR TCA 90 bp AGGAATCCTGGGATGAACACCTTGTTAGCTGCTGCTGGCAAGGTAAGGCCATCTTGGATTCAATGCCACTaGATCCGGTGTTGCCATGCG +
Preference number: 4 (lower is better)
Translates to: RNPGMNTLLAAAGKVRPSWIQCH*IRCCHA
Trigger: CGCATGGCAACACCGGATTCAGTGGCATTGAATCCA...AGATGGCCTTACCTTGCCAGCAGCAGCTAACAAGGTGTTCATCCCAGGATTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR TCA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTTGTGATGGCTCAGGCTaGAGAACCGGGGTGCTGTTT +
Preference number: 4 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPCDGSG*RTGVLF
Trigger: AAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACA...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGAGGCTCGAGGGAGACTaGTCCCCTGACCAATTCACC +
Preference number: 4 (lower is better)
Translates to: AYSPRTGKSSESLILNLLRLEGD*SPDQFT
Trigger: GGTGAATTGGTCAGGGGATCAGTCTCCCTCGAGCCT...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR GCA 90 bp GCCTTTCAACTAATGATAGTTCTCTGGGCGAAGCAAAAGCCCCACAAGTATCACGCAGTGAGCCATGACTaGGCCACTGCACTCCAGCCT +
Preference number: 4 (lower is better)
Translates to: AFQLMIVLWAKQKPHKYHAVSHD*ATALQP
Trigger: AGGCTGGAGTGCAGTGGCGCAGTCATGGCTCACTGC...GTGATACTTGTGGGGCTTTTGCTTCGCCCAGAGAACTATCATTAGTTGAAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR CCA 90 bp CATGTGATGGCTCAGGCTGAAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTATATCCTGGTGCCTGATTaGGGTGGGGACTGTCCTACT +
Preference number: 4 (lower is better)
Translates to: HVMAQAEEPGCCLSPCFYILVPD*GGDCPT
Trigger: AGTAGGACAGTCCCCACCCCAATCAGGCACCAGGAT...ATAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp TATGCAAGCCTGAACAAGGGGACCAACATTCCCAAGAAACTGGAACCCAGTCAGATCCTGGTGCCTGATTaGGGTGGGGACTGTCCTACT +
Preference number: 4 (lower is better)
Translates to: YASLNKGTNIPKKLEPSQILVPD*GGDCPT
Trigger: AGTAGGACAGTCCCCACCCCAATCAGGCACCAGGAT...CTGACTGGGTTCCAGTTTCTTGGGAATGTTGGTCCCCTTGTTCAGGCTTGCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTTCCCTGCTTTTATCCTaGTGCCTGATTGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPSLLLS*CLIGVG
Trigger: CCCCACCCCAATCAGGCACCAGGATAAAAGCAGGGA...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTTGGATTCAATGCCACTaGATCCGGTGTTGCCATGCG +
Preference number: 4 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGWIQCH*IRCCHA
Trigger: CGCATGGCAACACCGGATTCAGTGGCATTGAATCCA...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000447282.5
ENST00000546463.6
CDS-3UTR TCA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGTGTGATGGCTCAGGCTaGAGAACCGGGGTGCTGTTT +
Preference number: 4 (lower is better)
Translates to: AYSPRTGKSSESLILNLLCDGSG*RTGVLF
Trigger: AAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACA...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp TATGCAAGCCTGAACAAGGGGACCAACATTCCCAAGAAACTGGAACCCAGTCAGTGGCAGCTGTGGAAATaGATGAGGCACAGCCGTAGA +
Preference number: 4 (lower is better)
Translates to: YASLNKGTNIPKKLEPSQWQLWK*MRHSRR
Trigger: TCTACGGCTGTGCCTCATTCATTTCCACAGCTGCCA...CTGACTGGGTTCCAGTTTCTTGGGAATGTTGGTCCCCTTGTTCAGGCTTGCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR TCA 90 bp CATCTGAGAAGTCAGATAAACTTCCTCACTAGTGAAGCTTGTTGCCAATTACAGGGTGATCAGGGATCGTaGCGGAGGCTGCCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: HLRSQINFLTSEACCQLQGDQGS*RRLPGR
Trigger: CCTCCCAGGCAGCCTCCGTCACGATCCCTGATCACC...CTGTAATTGGCAACAAGCTTCACTAGTGAGGAAGTTTATCTGACTTCTCAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR TCA 90 bp AGAGGACCTTCAGGATCTAAACTGCCACAGACTCGTTATCTCTTTGTGGAAATAGGTGGTGGTGGTAGCTaGAGCCCCGGTACCCTTAGC +
Preference number: 4 (lower is better)
Translates to: RGPSGSKLPQTRYLFVEIGGGGS*SPGTLS
Trigger: GCTAAGGGTACCGGGGCTTCAGCTACCACCACCACC...TATTTCCACAAAGAGATAACGAGTCTGTGGCAGTTTAGATCCTGAAGGTCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR GCA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATTGCGGCTGCTCCGGCTaGTGCCTCTGCTGGTCTGGG +
Preference number: 4 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYCGCSG*CLCWSG
Trigger: CCCAGACCAGCAGAGGCAGCAGCCGGAGCAGCCGCA...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000546463.6
CDS-3UTR GCA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGGGAGAGGGCGCAGGCTaGGGCTGCTCCGGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKGEGAG*GCSGCC
Trigger: GCAGCAGCCGGAGCAGCCGCAGCCTGCGCCCTCTCC...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000546463.6
CDS-3UTR CCA 90 bp TATGACTTGGAAGAGATCCTCATGGTAACCATTCACCAGAGGAATCCTGGGATGTCATGCCAAGCAGACTaGAGACACAAGGGGCGGTCG +
Preference number: 4 (lower is better)
Translates to: YDLEEILMVTIHQRNPGMSCQAD*RHKGRS
Trigger: CGACCGCCCCTTGTGTCTCCAGTCTGCTTGGCATGA...CATCCCAGGATTCCTCTGGTGAATGGTTACCATGAGGATCTCTTCCAAGTCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR TCA 90 bp CATGTGATGGCTCAGGCTGAAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTATGCTCCGGACTTTATCTaGGGTGTCTGGAGAAGTTCT +
Preference number: 4 (lower is better)
Translates to: HVMAQAEEPGCCLSPCFYAPDFI*GVWRSS
Trigger: AGAACTTCTCCAGACACCTCAGATAAAGTCCGGAGC...ATAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGAGCTGTGGAAATGAATaGGGCACAGCCGTAGAGCTG +
Preference number: 4 (lower is better)
Translates to: AYSPRTGKSSESLILNLLSCGNE*GTAVEL
Trigger: CAGCTCTACGGCTGTGCCTCATTCATTTCCACAGCT...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR TCA 90 bp CATGTGATGGCTCAGGCTGAAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTATGGGAGACTGATCCCCTaGCCAATTCACCTGATAAAC +
Preference number: 4 (lower is better)
Translates to: HVMAQAEEPGCCLSPCFYGRLIP*PIHLIN
Trigger: GTTTATCAGGTGAATTGGTCAGGGGATCAGTCTCCC...ATAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR TCA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTGGGAGACTGATCCCCTaGCCAATTCACCTGATAAAC +
Preference number: 4 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPGRLIP*PIHLIN
Trigger: GTTTATCAGGTGAATTGGTCAGGGGATCAGTCTCCC...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR TCA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTAGGCTCGAGGGAGACTaGTCCCCTGACCAATTCACC +
Preference number: 4 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFRLEGD*SPDQFT
Trigger: GGTGAATTGGTCAGGGGATCAGTCTCCCTCGAGCCT...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR TCA 90 bp TATGACTTGGAAGAGATCCTCATGGTAACCATTCACCAGAGGAATCCTGGGATGAGGTTGATGCTGAGGTaGTCAGGGATCGTGACGGAG +
Preference number: 4 (lower is better)
Translates to: YDLEEILMVTIHQRNPGMRLMLR*SGIVTE
Trigger: CTCCGTCACGATCCCTGATCACCTCAGCATCAACCT...CATCCCAGGATTCCTCTGGTGAATGGTTACCATGAGGATCTCTTCCAAGTCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR GCA 90 bp TTCCTTATATTCAGCAAGCAACAAGGCAATAGAAAAGCCAGGGTTGTCTTTATATGCGGCTGCTCCGGCTaGTGCCTCTGCTGGTCTGGG +
Preference number: 4 (lower is better)
Translates to: FLIFSKQQGNRKARVVFICGCSG*CLCWSG
Trigger: CCCAGACCAGCAGAGGCAGCAGCCGGAGCAGCCGCA...TATAAAGACAACCCTGGCTTTTCTATTGCCTTGTTGCTTGCTGAATATAAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000546463.6
CDS-3UTR GCA 90 bp CATGTGATGGCTCAGGCTGAAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTATGCTGAAGAACCGGGGTaGTGTTTAAGTCCCTGCTTT +
Preference number: 4 (lower is better)
Translates to: HVMAQAEEPGCCLSPCFYAEEPG*CLSPCF
Trigger: AAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGC...ATAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR GCA 90 bp TATGCAAGCCTGAACAAGGGGACCAACATTCCCAAGAAACTGGAACCCAGTCAGGCTGAAGAACCGGGGTaGTGTTTAAGTCCCTGCTTT +
Preference number: 4 (lower is better)
Translates to: YASLNKGTNIPKKLEPSQAEEPG*CLSPCF
Trigger: AAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGC...CTGACTGGGTTCCAGTTTCTTGGGAATGTTGGTCCCCTTGTTCAGGCTTGCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp CCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCCACAGCCGTAGAGCTGTaGCTAAGGGCAAGCCCCTTC +
Preference number: 4 (lower is better)
Translates to: PKKLEPSQTYDQLLNVYATAVEL*LRASPF
Trigger: GAAGGGGCTTGCCCTTAGCCACAGCTCTACGGCTGT...GGCATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR GCA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGAGATGCATCCAAACCTaGACTGAATCCGGTGTTGCC +
Preference number: 4 (lower is better)
Translates to: AYSPRTGKSSESLILNLLRCIQT*TESGVA
Trigger: GGCAACACCGGATTCAGTGCAGGTTTGGATGCATCT...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000437231.5
ENST00000455667.7
ENST00000547859.2
CDS-3UTR GCA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGGCTGAAGAACCGGGGTaGTGTTTAAGTCCCTGCTTT +
Preference number: 4 (lower is better)
Translates to: AYSPRTGKSSESLILNLLAEEPG*CLSPCF
Trigger: AAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGC...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR GCA 90 bp GCCTTTCAACTAATGATAGTTCTCTGGGCGAAGCAAAAGCCCCACAAGTATCACCTGAGGTGGGTGGATTaGTTGAGCTCAGGAGTTCGA +
Preference number: 4 (lower is better)
Translates to: AFQLMIVLWAKQKPHKYHLRWVD*LSSGVR
Trigger: TCGAACTCCTGAGCTCAAGCAATCCACCCACCTCAG...GTGATACTTGTGGGGCTTTTGCTTCGCCCAGAGAACTATCATTAGTTGAAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR GCA 90 bp CCCTTTACCCTTCACAGCACACAGTGTACTAAGGTTCTTACTGCGCCAACTTTACACCTTGTTAGCTGCTaGTGGCAAGGTAAGGCCATC +
Preference number: 4 (lower is better)
Translates to: PFTLHSTQCTKVLTAPTLHLVSC*WQGKAI
Trigger: GATGGCCTTACCTTGCCAGCAGCAGCTAACAAGGTG...TAAAGTTGGCGCAGTAAGAACCTTAGTACACTGTGTGCTGTGAAGGGTAAAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR CCA 90 bp TATGCAAGCCTGAACAAGGGGACCAACATTCCCAAGAAACTGGAACCCAGTCAGCAGCTTGGTCAAATCTaGCTGTGGAATGGCATACTG +
Preference number: 4 (lower is better)
Translates to: YASLNKGTNIPKKLEPSQQLGQI*LWNGIL
Trigger: CAGTATGCCATTCCACAGCCAGATTTGACCAAGCTG...CTGACTGGGTTCCAGTTTCTTGGGAATGTTGGTCCCCTTGTTCAGGCTTGCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCAGCTTGGTCAAATCTaGCTGTGGAATGGCATACTG +
Preference number: 4 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGQLGQI*LWNGIL
Trigger: CAGTATGCCATTCCACAGCCAGATTTGACCAAGCTG...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGCCAACTGGTGCAGCTTaGTCAAATCTGGCTGTGGAA +
Preference number: 4 (lower is better)
Translates to: AYSPRTGKSSESLILNLLPTGAA*SNLAVE
Trigger: TTCCACAGCCAGATTTGACCAAGCTGCACCAGTTGG...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp CAAAAACTCAAGCAGCCATTCGAGTTTCATTCCAACACCAAATTCAGTAACATCGGCACATGGACGGGGTaGTGTGGGGAAAGCTCGCAC +
Preference number: 4 (lower is better)
Translates to: QKLKQPFEFHSNTKFSNIGTWTG*CGESSH
Trigger: GTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCC...GATGTTACTGAATTTGGTGTTGGAATGAAACTCGAATGGCTGCTTGAGTTTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR CCA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTAGGGCCAACCAAGCATaGAGTCAGGGAAAAATAGGA +
Preference number: 4 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPRANQA*SQGKIG
Trigger: TCCTATTTTTCCCTGACTCCATGCTTGGTTGGCCCT...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTTCCCTGCTTTTATCCTaGTGCCTGATTGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFSLLLS*CLIGVG
Trigger: CCCCACCCCAATCAGGCACCAGGATAAAAGCAGGGA...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR CCA 90 bp CCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCCTCCCTGCTTTTATCCTaGTGCCTGATTGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: PKKLEPSQTYDQLLNVYASLLLS*CLIGVG
Trigger: CCCCACCCCAATCAGGCACCAGGATAAAAGCAGGGA...GGCATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp CACAGCACACAGTGTACTAAGGTTCTTACTGCGCCAACTTTATTACAGCTAGAAGTGACGGAGGCTGCCTaGGAGGAGGGTTTAGCGTTT +
Preference number: 4 (lower is better)
Translates to: HSTQCTKVLTAPTLLQLEVTEAA*EEGLAF
Trigger: AAACGCTAAACCCTCCTCCCAGGCAGCCTCCGTCAC...TTCTAGCTGTAATAAAGTTGGCGCAGTAAGAACCTTAGTACACTGTGTGCTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
3UTR CAA 72 bp TGCACTTTTCTGTTCCGTTTACTCTGTTTACACATTTaGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCT +
Preference number: 4 (lower is better)
Translates to: CTFLFRLLCLHI*HLGGGRLRLGP
Trigger: AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACGGAACAGAAAAGTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR TCA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTTGGATTCAATGCCACTaGATCCGGTGTTGCCATGCG +
Preference number: 4 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFWIQCH*IRCCHA
Trigger: CGCATGGCAACACCGGATTCAGTGGCATTGAATCCA...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000447282.5
ENST00000546463.6
CDS-3UTR TCA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTGGAATAAAACCCACATaGATCACTGTGGCATCCAGT +
Preference number: 4 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPGIKPT*ITVASS
Trigger: ACTGGATGCCACAGTGATTCATGTGGGTTTTATTCC...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp CCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCCTGGCAGCTGTGGAAATaGATGAGGCACAGCCGTAGA +
Preference number: 4 (lower is better)
Translates to: PKKLEPSQTYDQLLNVYAWQLWK*MRHSRR
Trigger: TCTACGGCTGTGCCTCATTCATTTCCACAGCTGCCA...GGCATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR GCA 90 bp CATGTGATGGCTCAGGCTGAAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTATACCATTTATCTTCTCTaGCCAAGCCCTGTCTTAAGG +
Preference number: 4 (lower is better)
Translates to: HVMAQAEEPGCCLSPCFYTIYLL*PSPVLR
Trigger: CCTTAAGACAGGGCTTGGGCAGAGAAGATAAATGGT...ATAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR GCA 90 bp TACAGAGGACCTTCAGGATCTAAACTGCCACAGACTCGTTATCTCTTTGTGGAAGAGGGATGGGTTTCATaGCAAGCAGACTGGAGACAC +
Preference number: 4 (lower is better)
Translates to: YRGPSGSKLPQTRYLFVEEGWVS*QADWRH
Trigger: GTGTCTCCAGTCTGCTTGGCATGAAACCCATCCCTC...TTCCACAAAGAGATAACGAGTCTGTGGCAGTTTAGATCCTGAAGGTCCTCTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR CCA 90 bp CAAAAGGTCCTTCTAAATAGTTGCCTTTCAACTAATGATAGTTCTCTGGGCGAAATTTGGGTGTGGTGGTaGGAGCCTGCAGTCCCGGCT +
Preference number: 4 (lower is better)
Translates to: QKVLLNSCLSTNDSSLGEIWVWW*EPAVPA
Trigger: AGCCGGGACTGCAGGCTCCCACCACCACACCCAAAT...TTCGCCCAGAGAACTATCATTAGTTGAAAGGCAACTATTTAGAAGGACCTTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR TCA 90 bp TATGCAAGCCTGAACAAGGGGACCAACATTCCCAAGAAACTGGAACCCAGTCAGCCAAGAAGGGTCCTTTaGGGGATAAAAGGTACAAAA +
Preference number: 4 (lower is better)
Translates to: YASLNKGTNIPKKLEPSQPRRVL*GIKGTK
Trigger: TTTTGTACCTTTTATCCCTCAAAGGACCCTTCTTGG...CTGACTGGGTTCCAGTTTCTTGGGAATGTTGGTCCCCTTGTTCAGGCTTGCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp CCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCCGCTCCGGACTTTATCTaGGGTGTCTGGAGAAGTTCT +
Preference number: 4 (lower is better)
Translates to: PKKLEPSQTYDQLLNVYAAPDFI*GVWRSS
Trigger: AGAACTTCTCCAGACACCTCAGATAAAGTCCGGAGC...GGCATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTGGTTTTCTTGATGAATaGATGGGGTACCATACATGG +
Preference number: 4 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGGFLDE*MGYHTW
Trigger: CCATGTATGGTACCCCATTCATTCATCAAGAAAACC...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp CATGTGATGGCTCAGGCTGAAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTATGGTTTTCTTGATGAATaGATGGGGTACCATACATGG +
Preference number: 4 (lower is better)
Translates to: HVMAQAEEPGCCLSPCFYGFLDE*MGYHTW
Trigger: CCATGTATGGTACCCCATTCATTCATCAAGAAAACC...ATAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp TATGCAAGCCTGAACAAGGGGACCAACATTCCCAAGAAACTGGAACCCAGTCAGGGTTTTCTTGATGAATaGATGGGGTACCATACATGG +
Preference number: 4 (lower is better)
Translates to: YASLNKGTNIPKKLEPSQGFLDE*MGYHTW
Trigger: CCATGTATGGTACCCCATTCATTCATCAAGAAAACC...CTGACTGGGTTCCAGTTTCTTGGGAATGTTGGTCCCCTTGTTCAGGCTTGCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTGGGAGACTGATCCCCTaGCCAATTCACCTGATAAAC +
Preference number: 4 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFGRLIP*PIHLIN
Trigger: GTTTATCAGGTGAATTGGTCAGGGGATCAGTCTCCC...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR TCA 90 bp CTCAAGCAAAAGGTCCTTCTAAATAGTTGCCTTTCAACTAATGATAGTTCTCTGTGCTGCAGTGAGCCATaGCTGCGCCACTGCACTCCA +
Preference number: 4 (lower is better)
Translates to: LKQKVLLNSCLSTNDSSLCCSEP*LRHCTP
Trigger: TGGAGTGCAGTGGCGCAGTCATGGCTCACTGCAGCA...CAGAGAACTATCATTAGTTGAAAGGCAACTATTTAGAAGGACCTTTTGCTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR GCA 90 bp CCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCCAGATGCATCCAAACCTaGACTGAATCCGGTGTTGCC +
Preference number: 4 (lower is better)
Translates to: PKKLEPSQTYDQLLNVYARCIQT*TESGVA
Trigger: GGCAACACCGGATTCAGTGCAGGTTTGGATGCATCT...GGCATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000437231.5
ENST00000455667.7
ENST00000547859.2
CDS-3UTR CCA 90 bp CCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCCCCAACTGGTGCAGCTTaGTCAAATCTGGCTGTGGAA +
Preference number: 4 (lower is better)
Translates to: PKKLEPSQTYDQLLNVYAPTGAA*SNLAVE
Trigger: TTCCACAGCCAGATTTGACCAAGCTGCACCAGTTGG...GGCATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp ACAGAGGACCTTCAGGATCTAAACTGCCACAGACTCGTTATCTCTTTGTGGAAACCAACTGGTGCAGCTTaGTCAAATCTGGCTGTGGAA +
Preference number: 4 (lower is better)
Translates to: TEDLQDLNCHRLVISLWKPTGAA*SNLAVE
Trigger: TTCCACAGCCAGATTTGACCAAGCTGCACCAGTTGG...TTTCCACAAAGAGATAACGAGTCTGTGGCAGTTTAGATCCTGAAGGTCCTCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR CCA 90 bp GGAAGTGGTAAAATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAGGCACATGGACGGGGTaGTGTGGGGAAAGCTCGCAC +
Preference number: 4 (lower is better)
Translates to: GSGKIEENILTGIKASIQGTWTG*CGESSH
Trigger: GTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCC...TTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATTTTACCACTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCACATGAATCACTGTaGCATCCAGTTTCTATTCAC +
Preference number: 4 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGPHESL*HPVSIH
Trigger: GTGAATAGAAACTGGATGCCACAGTGATTCATGTGG...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTACATTCCCAAGAAACTaGAACCCAGTCAGACATATG +
Preference number: 4 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGTFPRN*NPVRHM
Trigger: CATATGTCTGACTGGGTTCCAGTTTCTTGGGAATGT...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATACAGCCGTAGAGCTGTaGCTAAGGGCAAGCCCCTTC +
Preference number: 4 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYTAVEL*LRASPF
Trigger: GAAGGGGCTTGCCCTTAGCCACAGCTCTACGGCTGT...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR TCA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGCCAAGAAGGGTCCTTTaGGGGATAAAAGGTACAAAA +
Preference number: 4 (lower is better)
Translates to: AYSPRTGKSSESLILNLLPRRVL*GIKGTK
Trigger: TTTTGTACCTTTTATCCCTCAAAGGACCCTTCTTGG...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp CATGTGATGGCTCAGGCTGAAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTATCCCTGTGAAAAACCTTaGAATATAACACTCCATGCA +
Preference number: 4 (lower is better)
Translates to: HVMAQAEEPGCCLSPCFYPCEKP*NITLHA
Trigger: TGCATGGAGTGTTATATTTCAAGGTTTTTCACAGGG...ATAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp TATGCAAGCCTGAACAAGGGGACCAACATTCCCAAGAAACTGGAACCCAGTCAGCCCTGTGAAAAACCTTaGAATATAACACTCCATGCA +
Preference number: 4 (lower is better)
Translates to: YASLNKGTNIPKKLEPSQPCEKP*NITLHA
Trigger: TGCATGGAGTGTTATATTTCAAGGTTTTTCACAGGG...CTGACTGGGTTCCAGTTTCTTGGGAATGTTGGTCCCCTTGTTCAGGCTTGCATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp CAAAAGGTCCTTCTAAATAGTTGCCTTTCAACTAATGATAGTTCTCTGGGCGAAGGTAGGAGGGTTACATaGGCCCAGAAGTCGAGGTTG +
Preference number: 4 (lower is better)
Translates to: QKVLLNSCLSTNDSSLGEGRRVT*AQKSRL
Trigger: CAACCTCGACTTCTGGGCTCATGTAACCCTCCTACC...TTCGCCCAGAGAACTATCATTAGTTGAAAGGCAACTATTTAGAAGGACCTTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR TCA 90 bp AGCAGCTTTTATTCATTAACACAGAGCCTAACACATTGTTATATTGCAAGGCAGGAAGGGGTGGAGGGTTaGGAGAGGTTGATGCTGAGG +
Preference number: 4 (lower is better)
Translates to: SSFYSLTQSLTHCYIARQEGVEG*ERLMLR
Trigger: CCTCAGCATCAACCTCTCTCAACCCTCCACCCCTTC...CTGCCTTGCAATATAACAATGTGTTAGGCTCTGTGTTAATGAATAAAAGCTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR GCA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTAGATGCATCCAAACCTaGCCAATAGCCTTTCACCTC +
Preference number: 4 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFRCIQT*PIAFHL
Trigger: GAGGTGAAAGGCTATTGGGCAGGTTTGGATGCATCT...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000447282.5
ENST00000546463.6
CDS-3UTR GCA 90 bp CTCAAGCAAAAGGTCCTTCTAAATAGTTGCCTTTCAACTAATGATAGTTCTCTGCACTGTCGCTGCCTGTaGTGTACCTGTCCTGACCAC +
Preference number: 4 (lower is better)
Translates to: LKQKVLLNSCLSTNDSSLHCRCL*CTCPDH
Trigger: GTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTG...CAGAGAACTATCATTAGTTGAAAGGCAACTATTTAGAAGGACCTTTTGCTTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR GCA 90 bp GACTTGGAAGAGATCCTCATGGTAACCATTCACCAGAGGAATCCTGGGATGAACACTAGTGAAGCTTGTTaGCAATTACAGAGGACCTTC +
Preference number: 4 (lower is better)
Translates to: DLEEILMVTIHQRNPGMNTSEAC*QLQRTF
Trigger: GAAGGTCCTCTGTAATTGGCAACAAGCTTCACTAGT...GTTCATCCCAGGATTCCTCTGGTGAATGGTTACCATGAGGATCTCTTCCAAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR GCA 90 bp AGAGGACCTTCAGGATCTAAACTGCCACAGACTCGTTATCTCTTTGTGGAAATAAGACTTATCCCACTTTaGCCCTCCCCTTCATTCTGG +
Preference number: 4 (lower is better)
Translates to: RGPSGSKLPQTRYLFVEIRLIPL*PSPSFW
Trigger: CCAGAATGAAGGGGAGGGGCAAAGTGGGATAAGTCT...TATTTCCACAAAGAGATAACGAGTCTGTGGCAGTTTAGATCCTGAAGGTCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR CCA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGCCACATGAATCACTGTaGCATCCAGTTTCTATTCAC +
Preference number: 4 (lower is better)
Translates to: AYSPRTGKSSESLILNLLPHESL*HPVSIH
Trigger: GTGAATAGAAACTGGATGCCACAGTGATTCATGTGG...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGACATTCCCAAGAAACTaGAACCCAGTCAGACATATG +
Preference number: 4 (lower is better)
Translates to: AYSPRTGKSSESLILNLLTFPRN*NPVRHM
Trigger: CATATGTCTGACTGGGTTCCAGTTTCTTGGGAATGT...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATATCCTGGTGCCTGATTaGGGTGGGGACTGTCCTACT +
Preference number: 4 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYILVPD*GGDCPT
Trigger: AGTAGGACAGTCCCCACCCCAATCAGGCACCAGGAT...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGCCCTGTGAAAAACCTTaGAATATAACACTCCATGCA +
Preference number: 4 (lower is better)
Translates to: AYSPRTGKSSESLILNLLPCEKP*NITLHA
Trigger: TGCATGGAGTGTTATATTTCAAGGTTTTTCACAGGG...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR GCA 90 bp GGAAGTGGTAAAATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAACACTGTCGCTGCCTGTaGTGTACCTGTCCTGACCAC +
Preference number: 4 (lower is better)
Translates to: GSGKIEENILTGIKASIQHCRCL*CTCPDH
Trigger: GTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTG...TTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATTTTACCACTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000546463.6
ENST00000547859.2
CDS-3UTR GCA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTACCATTTATCTTCTCTaGCCAAGCCCTGTCTTAAGG +
Preference number: 4 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFTIYLL*PSPVLR
Trigger: CCTTAAGACAGGGCTTGGGCAGAGAAGATAAATGGT...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR GCA 90 bp CCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCCACCATTTATCTTCTCTaGCCAAGCCCTGTCTTAAGG +
Preference number: 4 (lower is better)
Translates to: PKKLEPSQTYDQLLNVYATIYLL*PSPVLR
Trigger: CCTTAAGACAGGGCTTGGGCAGAGAAGATAAATGGT...GGCATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR GCA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTGAAAACCACTTAGACTaGACTTTTCTGTTCCGTTTA +
Preference number: 4 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPENHLD*TFLFRL
Trigger: TAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTC...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR GCA 90 bp GTCCTTCTAAATAGTTGCCTTTCAACTAATGATAGTTCTCTGGGCGAAGCAAAAGCAGGCAAGCAAGTGTaGTGGCTCAAGCCTGTAGTA +
Preference number: 4 (lower is better)
Translates to: VLLNSCLSTNDSSLGEAKAGKQV*WLKPVV
Trigger: TACTACAGGCTTGAGCCAGCACACTTGCTTGCCTGC...TTTTGCTTCGCCCAGAGAACTATCATTAGTTGAAAGGCAACTATTTAGAAGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR GCA 90 bp CCCTTTACCCTTCACAGCACACAGTGTACTAAGGTTCTTACTGCGCCAACTTTACTTCAGGATCTAAACTaGCACAGACTCGTTATCTCT +
Preference number: 4 (lower is better)
Translates to: PFTLHSTQCTKVLTAPTLLQDLN*HRLVIS
Trigger: AGAGATAACGAGTCTGTGGCAGTTTAGATCCTGAAG...TAAAGTTGGCGCAGTAAGAACCTTAGTACACTGTGTGCTGTGAAGGGTAAAGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR CCA 90 bp TTCCTTATATTCAGCAAGCAACAAGGCAATAGAAAAGCCAGGGTTGTCTTTATATCCCTGCTTTTATCCTaGTGCCTGATTGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: FLIFSKQQGNRKARVVFISLLLS*CLIGVG
Trigger: CCCCACCCCAATCAGGCACCAGGATAAAAGCAGGGA...TATAAAGACAACCCTGGCTTTTCTATTGCCTTGTTGCTTGCTGAATATAAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR CCA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGACAGCCGTAGAGCTGTaGCTAAGGGCAAGCCCCTTC +
Preference number: 4 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKTAVEL*LRASPF
Trigger: GAAGGGGCTTGCCCTTAGCCACAGCTCTACGGCTGT...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR TCA 90 bp CCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCCCCAAGAAGGGTCCTTTaGGGGATAAAAGGTACAAAA +
Preference number: 4 (lower is better)
Translates to: PKKLEPSQTYDQLLNVYAPRRVL*GIKGTK
Trigger: TTTTGTACCTTTTATCCCTCAAAGGACCCTTCTTGG...GGCATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGTGTGATGGCTCAGGCTaGAGAACCGGGGTGCTGTTT +
Preference number: 4 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKCDGSG*RTGVLF
Trigger: AAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACA...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp TATGTGCCAGGTACCATGAGAAGTGCTTCGAATATAGCAATTAACAAAATTAAGGATGTTTTGCTGCAGTaGGCCATGACTGCGCCACTG +
Preference number: 4 (lower is better)
Translates to: YVPGTMRSASNIAINKIKDVLLQ*AMTAPL
Trigger: CAGTGGCGCAGTCATGGCTCACTGCAGCAAAACATC...CTTAATTTTGTTAATTGCTATATTCGAAGCACTTCTCATGGTACCTGGCACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR GCA 90 bp CATCTGAGAAGTCAGATAAACTTCCTCACTAGTGAAGCTTGTTGCCAATTACAGAGATGCATCCAAACCTaGCCAATAGCCTTTCACCTC +
Preference number: 4 (lower is better)
Translates to: HLRSQINFLTSEACCQLQRCIQT*PIAFHL
Trigger: GAGGTGAAAGGCTATTGGGCAGGTTTGGATGCATCT...CTGTAATTGGCAACAAGCTTCACTAGTGAGGAAGTTTATCTGACTTCTCAGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR GCA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATAGATGCATCCAAACCTaGACTGAATCCGGTGTTGCC +
Preference number: 4 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYRCIQT*TESGVA
Trigger: GGCAACACCGGATTCAGTGCAGGTTTGGATGCATCT...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000437231.5
ENST00000455667.7
ENST00000547859.2
CDS-3UTR GCA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCTGAAGAACCGGGGTaGTGTTTAAGTCCCTGCTTT +
Preference number: 4 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYAEEPG*CLSPCF
Trigger: AAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGC...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR GCA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGGAAAACCACTTAGACTaGACTTTTCTGTTCCGTTTA +
Preference number: 4 (lower is better)
Translates to: AYSPRTGKSSESLILNLLENHLD*TFLFRL
Trigger: TAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTC...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR GCA 90 bp AGCAGCTTTTATTCATTAACACAGAGCCTAACACATTGTTATATTGCAAGGCAGGAACACCTTGTTAGCTaGTGCTGGCAAGGTAAGGCC +
Preference number: 4 (lower is better)
Translates to: SSFYSLTQSLTHCYIARQEHLVS*CWQGKA
Trigger: GGCCTTACCTTGCCAGCAGCAGCTAACAAGGTGTTC...CTGCCTTGCAATATAACAATGTGTTAGGCTCTGTGTTAATGAATAAAAGCTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR CCA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATCCAACTGGTGCAGCTTaGTCAAATCTGGCTGTGGAA +
Preference number: 4 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYPTGAA*SNLAVE
Trigger: TTCCACAGCCAGATTTGACCAAGCTGCACCAGTTGG...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp CCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCCCCACATGAATCACTGTaGCATCCAGTTTCTATTCAC +
Preference number: 4 (lower is better)
Translates to: PKKLEPSQTYDQLLNVYAPHESL*HPVSIH
Trigger: GTGAATAGAAACTGGATGCCACAGTGATTCATGTGG...GGCATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGTCCCTGCTTTTATCCTaGTGCCTGATTGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKSLLLS*CLIGVG
Trigger: CCCCACCCCAATCAGGCACCAGGATAAAAGCAGGGA...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp TATGTGCCAGGTACCATGAGAAGTGCTTCGAATATAGCAATTAACAAAATTAAGACTGGGAGCCTGAGGTaGGTGGATTGCTTGAGCTCA +
Preference number: 4 (lower is better)
Translates to: YVPGTMRSASNIAINKIKTGSLR*VDCLSS
Trigger: TGAGCTCAAGCAATCCACCCACCTCAGGCTCCCAGT...CTTAATTTTGTTAATTGCTATATTCGAAGCACTTCTCATGGTACCTGGCACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR CCA 90 bp AATTCACTTGGGATTCAAAAAGCCCATGTCAGTTATACAGGCTTCCTAGCTGAATTTGTTAGTTACACATaGCACGGCAGAGGTGGTGGT +
Preference number: 4 (lower is better)
Translates to: NSLGIQKAHVSYTGFLAEFVSYT*HGRGGG
Trigger: ACCACCACCTCTGCCGTGCCATGTGTAACTAACAAA...TTCAGCTAGGAAGCCTGTATAACTGACATGGGCTTTTTGAATCCCAAGTGAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000553064.6
3UTR CAA 72 bp AGGTGTCTGGAGAAGTTCTCCTGCCCCTCCACTTTTTaGCATCTACTCTCACTAAATGAGTATAATGTCAAG +
Preference number: 4 (lower is better)
Translates to: RCLEKFSCPSTF*HLLSLNEYNVK
Trigger: CTTGACATTATACTCATTTAGTGAGAGTAGATGCAAAAAAGTGGAGGGGCAGGAGAACTTCTCCAGACACCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTCCCTGTGAAAAACCTTaGAATATAACACTCCATGCA +
Preference number: 4 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFPCEKP*NITLHA
Trigger: TGCATGGAGTGTTATATTTCAAGGTTTTTCACAGGG...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR TCA 90 bp GGAAGTGGTAAAATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAGCTGTGGAAATGAATaGGGCACAGCCGTAGAGCTG +
Preference number: 4 (lower is better)
Translates to: GSGKIEENILTGIKASIQSCGNE*GTAVEL
Trigger: CAGCTCTACGGCTGTGCCTCATTCATTTCCACAGCT...TTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATTTTACCACTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR TCA 90 bp GGAAGTGGTAAAATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAATGGCAGCTGTGGAAATaGATGAGGCACAGCCGTAGA +
Preference number: 4 (lower is better)
Translates to: GSGKIEENILTGIKASIQWQLWK*MRHSRR
Trigger: TCTACGGCTGTGCCTCATTCATTTCCACAGCTGCCA...TTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATTTTACCACTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR TCA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGTGGCAGCTGTGGAAATaGATGAGGCACAGCCGTAGA +
Preference number: 4 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKWQLWK*MRHSRR
Trigger: TCTACGGCTGTGCCTCATTCATTTCCACAGCTGCCA...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR TCA 90 bp CAAAAGGTCCTTCTAAATAGTTGCCTTTCAACTAATGATAGTTCTCTGGGCGAATCTGGTCAAGAAAAATaGCGCTGCAGGCAAGCAAGT +
Preference number: 4 (lower is better)
Translates to: QKVLLNSCLSTNDSSLGESGQEK*RCRQAS
Trigger: ACTTGCTTGCCTGCAGCGTCATTTTTCTTGACCAGA...TTCGCCCAGAGAACTATCATTAGTTGAAAGGCAACTATTTAGAAGGACCTTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR TCA 90 bp AATTCACTTGGGATTCAAAAAGCCCATGTCAGTTATACAGGCTTCCTAGCTGAAAAACAGGCACTCAGCTaGAATGGCCTAAACCTAAAC +
Preference number: 4 (lower is better)
Translates to: NSLGIQKAHVSYTGFLAEKQALS*NGLNLN
Trigger: GTTTAGGTTTAGGCCATTTCAGCTGAGTGCCTGTTT...TTCAGCTAGGAAGCCTGTATAACTGACATGGGCTTTTTGAATCCCAAGTGAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR GCA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGAGACATATGATCAACTaGTTAATGTGTATGCCATGT +
Preference number: 4 (lower is better)
Translates to: AYSPRTGKSSESLILNLLRHMIN*LMCMPC
Trigger: ACATGGCATACACATTAAGCAGTTGATCATATGTCT...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATCAGCTTGGTCAAATCTaGCTGTGGAATGGCATACTG +
Preference number: 4 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYQLGQI*LWNGIL
Trigger: CAGTATGCCATTCCACAGCCAGATTTGACCAAGCTG...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGGCTCCGGACTTTATCTaGGGTGTCTGGAGAAGTTCT +
Preference number: 4 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKAPDFI*GVWRSS
Trigger: AGAACTTCTCCAGACACCTCAGATAAAGTCCGGAGC...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp CAAACGACTATAAAATTCACTTGGGATTCAAAAAGCCCATGTCAGTTATACAGGATTCAAGTCAGACCCTaGAACAGGCACTCAGCTGAA +
Preference number: 4 (lower is better)
Translates to: QTTIKFTWDSKSPCQLYRIQVRP*NRHSAE
Trigger: TTCAGCTGAGTGCCTGTTTCAGGGTCTGACTTGAAT...CCTGTATAACTGACATGGGCTTTTTGAATCCCAAGTGAATTTTATAGTCGTTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR TCA 90 bp TGTACTAAGGTTCTTACTGCGCCAACTTTATTACAGCTAGAAACACAAATATGGTACAGGCTTCCTAGCTaGATAGCCACAAGTCACAAG +
Preference number: 4 (lower is better)
Translates to: CTKVLTAPTLLQLETQIWYRLPS*IATSHK
Trigger: CTTGTGACTTGTGGCTATTCAGCTAGGAAGCCTGTA...CCATATTTGTGTTTCTAGCTGTAATAAAGTTGGCGCAGTAAGAACCTTAGTACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR GCA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATACCATTTATCTTCTCTaGCCAAGCCCTGTCTTAAGG +
Preference number: 4 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYTIYLL*PSPVLR
Trigger: CCTTAAGACAGGGCTTGGGCAGAGAAGATAAATGGT...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR GCA 90 bp CCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCCGAAAACCACTTAGACTaGACTTTTCTGTTCCGTTTA +
Preference number: 4 (lower is better)
Translates to: PKKLEPSQTYDQLLNVYAENHLD*TFLFRL
Trigger: TAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTC...GGCATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR CCA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGCCAACTGGTGCAGCTTaGTCAAATCTGGCTGTGGAA +
Preference number: 4 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKPTGAA*SNLAVE
Trigger: TTCCACAGCCAGATTTGACCAAGCTGCACCAGTTGG...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp ACAAGAATAAGCGTGAATAACAGCCTAAATTTAACCTACTCTCAAGCAAAAGGTCCAACTGGTGCAGCTTaGTCAAATCTGGCTGTGGAA +
Preference number: 4 (lower is better)
Translates to: TRISVNNSLNLTYSQAKGPTGAA*SNLAVE
Trigger: TTCCACAGCCAGATTTGACCAAGCTGCACCAGTTGG...ACCTTTTGCTTGAGAGTAGGTTAAATTTAGGCTGTTATTCACGCTTATTCTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR CCA 90 bp TATGTGCCAGGTACCATGAGAAGTGCTTCGAATATAGCAATTAACAAAATTAAGGTAATCCGAGCACTTTaGGAGACCAAGGCAGTCGAA +
Preference number: 4 (lower is better)
Translates to: YVPGTMRSASNIAINKIKVIRAL*ETKAVE
Trigger: TTCGACTGCCTTGGTCTCCCAAAGTGCTCGGATTAC...CTTAATTTTGTTAATTGCTATATTCGAAGCACTTCTCATGGTACCTGGCACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR CCA 90 bp AATTCACTTGGGATTCAAAAAGCCCATGTCAGTTATACAGGCTTCCTAGCTGAACTAGAAACACAAATATaGCCAAGAAGGCCTGCTGAT +
Preference number: 4 (lower is better)
Translates to: NSLGIQKAHVSYTGFLAELETQI*PRRPAD
Trigger: ATCAGCAGGCCTTCTTGGCCATATTTGTGTTTCTAG...TTCAGCTAGGAAGCCTGTATAACTGACATGGGCTTTTTGAATCCCAAGTGAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR TCA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATCCAAGAAGGGTCCTTTaGGGGATAAAAGGTACAAAA +
Preference number: 4 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYPRRVL*GIKGTK
Trigger: TTTTGTACCTTTTATCCCTCAAAGGACCCTTCTTGG...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGGTTTTCTTGATGAATaGATGGGGTACCATACATGG +
Preference number: 4 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYGFLDE*MGYHTW
Trigger: CCATGTATGGTACCCCATTCATTCATCAAGAAAACC...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR GCA 90 bp GGAAGTGGTAAAATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAGATGCATCCAAACCTaGCCAATAGCCTTTCACCTC +
Preference number: 4 (lower is better)
Translates to: GSGKIEENILTGIKASIQRCIQT*PIAFHL
Trigger: GAGGTGAAAGGCTATTGGGCAGGTTTGGATGCATCT...TTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATTTTACCACTTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000447282.5
ENST00000546463.6
CDS-3UTR GCA 90 bp ACAAGAATAAGCGTGAATAACAGCCTAAATTTAACCTACTCTCAAGCAAAAGGTAGATGCATCCAAACCTaGCCAATAGCCTTTCACCTC +
Preference number: 4 (lower is better)
Translates to: TRISVNNSLNLTYSQAKGRCIQT*PIAFHL
Trigger: GAGGTGAAAGGCTATTGGGCAGGTTTGGATGCATCT...ACCTTTTGCTTGAGAGTAGGTTAAATTTAGGCTGTTATTCACGCTTATTCTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR CCA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGCAGCTTGGTCAAATCTaGCTGTGGAATGGCATACTG +
Preference number: 4 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKQLGQI*LWNGIL
Trigger: CAGTATGCCATTCCACAGCCAGATTTGACCAAGCTG...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp GGAAGTGGTAAAATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAACAGCTTGGTCAAATCTaGCTGTGGAATGGCATACTG +
Preference number: 4 (lower is better)
Translates to: GSGKIEENILTGIKASIQQLGQI*LWNGIL
Trigger: CAGTATGCCATTCCACAGCCAGATTTGACCAAGCTG...TTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATTTTACCACTTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CCA 90 bp ACAAGAATAAGCGTGAATAACAGCCTAAATTTAACCTACTCTCAAGCAAAAGGTCTAATGATAGTTCTCTaGGCGAAGCAAAAGCCCCAC +
Preference number: 4 (lower is better)
Translates to: TRISVNNSLNLTYSQAKGLMIVL*AKQKPH
Trigger: GTGGGGCTTTTGCTTCGCCCAGAGAACTATCATTAG...ACCTTTTGCTTGAGAGTAGGTTAAATTTAGGCTGTTATTCACGCTTATTCTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR TCA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATCCCTGTGAAAAACCTTaGAATATAACACTCCATGCA +
Preference number: 4 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYPCEKP*NITLHA
Trigger: TGCATGGAGTGTTATATTTCAAGGTTTTTCACAGGG...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR TCA 90 bp CATCTGAGAAGTCAGATAAACTTCCTCACTAGTGAAGCTTGTTGCCAATTACAGTGTTCTTTGAATGTATaGCTTGGAAGAGATCCTCAT +
Preference number: 4 (lower is better)
Translates to: HLRSQINFLTSEACCQLQCSLNV*LGRDPH
Trigger: ATGAGGATCTCTTCCAAGTCATACATTCAAAGAACA...CTGTAATTGGCAACAAGCTTCACTAGTGAGGAAGTTTATCTGACTTCTCAGATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR GCA 90 bp CTCAAGCAAAAGGTCCTTCTAAATAGTTGCCTTTCAACTAATGATAGTTCTCTGGAGAAAAACAGTTCATaGTCTTCCAATTCCTCCAGC +
Preference number: 4 (lower is better)
Translates to: LKQKVLLNSCLSTNDSSLEKNSS*SSNSSS
Trigger: GCTGGAGGAATTGGAAGAGCATGAACTGTTTTTCTC...CAGAGAACTATCATTAGTTGAAAGGCAACTATTTAGAAGGACCTTTTGCTTGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR CCA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGACATTCCCAAGAAACTaGAACCCAGTCAGACATATG +
Preference number: 4 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKTFPRN*NPVRHM
Trigger: CATATGTCTGACTGGGTTCCAGTTTCTTGGGAATGT...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR GCA 90 bp TTCCTTATATTCAGCAAGCAACAAGGCAATAGAAAAGCCAGGGTTGTCTTTATAAGACATATGATCAACTaGTTAATGTGTATGCCATGT +
Preference number: 4 (lower is better)
Translates to: FLIFSKQQGNRKARVVFIRHMIN*LMCMPC
Trigger: ACATGGCATACACATTAAGCAGTTGATCATATGTCT...TATAAAGACAACCCTGGCTTTTCTATTGCCTTGTTGCTTGCTGAATATAAGGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR GCA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGAGACATATGATCAACTaGTTAATGTGTATGCCATGT +
Preference number: 4 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKRHMIN*LMCMPC
Trigger: ACATGGCATACACATTAAGCAGTTGATCATATGTCT...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS CCA 90 bp TCATGCCAAGCAGACTGGAGACACAAGGGGCGGTCGGAAGAGGGTTaGGGAGGCTGGAGGGTGCGTCGGAGGTCCCCGCTGTGGCGAGCG +
Preference number: 5 (lower is better)
Translates to: SCQADWRHKGRSEEG*GGWRVRRRSPLWRA
Trigger: CGCTCGCCACAGCGGGGACCTCCGACGCACCCTCCAGCCTCCCCAACCCTCTTCCGACCGCCCCTTGTGTCTCCAGTCTGCTTGGCATGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR CAA 90 bp GGCACATGGACGGGGTGGTGTGGGGAAAGCTCGCACTGTCGCTGCCTGTGCTGTCCCTCCAGGTCAGGGTaGAGGCACATGGACGGGGTG +
Preference number: 5 (lower is better)
Translates to: GTWTGWCGESSHCRCLCCPSRSG*RHMDGV
Trigger: CACCCCGTCCATGTGCCTCAACCCTGACCTGGAGGG...ACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000546652.6
ENST00000550585.5
CDS-3UTR CAA 90 bp GGCACATGGACGGGGTGGTGTGGGGAAAGCTCGCACTGTCGCTGCCTGTGCTGTGCCAACTGGTGCAGCTaGGTCAACTCTAGAGGTGGT +
Preference number: 5 (lower is better)
Translates to: GTWTGWCGESSHCRCLCCANWCS*VNSRGG
Trigger: ACCACCTCTAGAGTTGACCAAGCTGCACCAGTTGGC...ACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546652.6
CDS CCA 90 bp ACAAAAATTTGGGTGTGGTGGTGGGAGCCTGCAGTCCCGGCTCCTTaGGAGGCTGAGATGAGAGGATCGCCTGAGGCTGGGAAGGTCGAT +
Preference number: 5 (lower is better)
Translates to: TKIWVWWWEPAVPAP*EAEMRGSPEAGKVD
Trigger: ATCGACCTTCCCAGCCTCAGGCGATCCTCTCATCTCAGCCTCCCAAGGAGCCGGGACTGCAGGCTCCCACCACCACACCCAAATTTTTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR CAA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCCTCCAGGTCAGGGTaGAGGCACATGGACGGGGTG +
Preference number: 5 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGPSRSG*RHMDGV
Trigger: CACCCCGTCCATGTGCCTCAACCCTGACCTGGAGGG...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000546463.6
ENST00000547859.2
CDS CCA 90 bp TACCCGTACCCATCTTTAACAACACCTGGACTGAACCAGGCCAGCTaGCTAACACTCAAGCTTAGTCCTGATCTCAGCTATGGCTGCTGT +
Preference number: 5 (lower is better)
Translates to: YPYPSLTTPGLNQAS*LTLKLSPDLSYGCC
Trigger: ACAGCAGCCATAGCTGAGATCAGGACTAAGCTTGAGTGTTAGCCAGCTGGCCTGGTTCAGTCCAGGTGTTGTTAAAGATGGGTACGGGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000547048.5
CDS-3UTR CAA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGGCCAACTGGTGCAGCTaGGTCAAATCTGGCTGTGGA +
Preference number: 5 (lower is better)
Translates to: AYSPRTGKSSESLILNLLANWCS*VKSGCG
Trigger: TCCACAGCCAGATTTGACCAAGCTGCACCAGTTGGC...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS GCA 90 bp GCCAGCTGGCTAACACTCAAGCTTAGTCCTGATCTCAGCTATGGCTaGTGTCTCATCATTTTTAGAAGGGGGTTGGCCAGATCCATCAAG +
Preference number: 5 (lower is better)
Translates to: ASWLTLKLSPDLSYG*CLIIFRRGLARSIK
Trigger: CTTGATGGATCTGGCCAACCCCCTTCTAAAAATGATGAGACAGCAGCCATAGCTGAGATCAGGACTAAGCTTGAGTGTTAGCCAGCTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000547048.5
CDS-3UTR CAA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTTTACACATTTTGCACTaGGGAGGAGGGAGGCTAAGG +
Preference number: 5 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPLHILH*GGGRLR
Trigger: CCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAA...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp TTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCTCTCTGTTTACACATTTaGCACTTGGGAGGAGGGAGG +
Preference number: 5 (lower is better)
Translates to: LLCLHILHLGGGRLRLGPLCLHI*HLGGGR
Trigger: CCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAG...AGGACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp CATGTGATGGCTCAGGCTGAAGAACCGGGGTGCTGTTTAAGTCCCTGCTTTTATCTCTGTTTACACATTTaGCACTTGGGAGGAGGGAGG +
Preference number: 5 (lower is better)
Translates to: HVMAQAEEPGCCLSPCFYLCLHI*HLGGGR
Trigger: CCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAG...ATAAAAGCAGGGACTTAAACAGCACCCCGGTTCTTCAGCCTGAGCCATCACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp TATGACTTGGAAGAGATCCTCATGGTAACCATTCACCAGAGGAATCCTGGGATGCCTGGGATGAACACCTaGTTAGCTGCTGCTGGCAAG +
Preference number: 5 (lower is better)
Translates to: YDLEEILMVTIHQRNPGMPGMNT*LAAAGK
Trigger: CTTGCCAGCAGCAGCTAACAAGGTGTTCATCCCAGG...CATCCCAGGATTCCTCTGGTGAATGGTTACCATGAGGATCTCTTCCAAGTCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR CAA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTGCCAACTGGTGCAGCTaGGTCAAATCTGGCTGTGGA +
Preference number: 5 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFANWCS*VKSGCG
Trigger: TCCACAGCCAGATTTGACCAAGCTGCACCAGTTGGC...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR CAA 90 bp AAATTAAGATCTCTGTCGTGCCATGTACGATACGCTCCCAAAAACTCAAGCAGCGCCAACTGGTGCAGCTaGGTCAAATCTGGCTGTGGA +
Preference number: 5 (lower is better)
Translates to: KLRSLSCHVRYAPKNSSSANWCS*VKSGCG
Trigger: TCCACAGCCAGATTTGACCAAGCTGCACCAGTTGGC...GCTGCTTGAGTTTTTGGGAGCGTATCGTACATGGCACGACAGAGATCTTAATTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR CAA 90 bp TTCCTTATATTCAGCAAGCAACAAGGCAATAGAAAAGCCAGGGTTGTCTTTATACCCTCCAGGTCAGGGTaGAGGCACATGGACGGGGTG +
Preference number: 5 (lower is better)
Translates to: FLIFSKQQGNRKARVVFIPSRSG*RHMDGV
Trigger: CACCCCGTCCATGTGCCTCAACCCTGACCTGGAGGG...TATAAAGACAACCCTGGCTTTTCTATTGCCTTGTTGCTTGCTGAATATAAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546463.6
CDS-3UTR CAA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTATGCAGGCCCAGCTGTaGAGGGTTTTCTTGATGAAT +
Preference number: 5 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGMQAQL*RVFLMN
Trigger: ATTCATCAAGAAAACCCTCAACAGCTGGGCCTGCAT...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGCTCTGTTTACACATTTaGCACTTGGGAGGAGGGAGG +
Preference number: 5 (lower is better)
Translates to: AYSPRTGKSSESLILNLLLCLHI*HLGGGR
Trigger: CCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAG...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp GCAGCAATTTCAGAGCCTAAAACTCTAGTAGATATTTATCCATTTCCAATCTTCCCCTCCAGGTCAGGGTaGAGGCACATGGACGGGGTG +
Preference number: 5 (lower is better)
Translates to: AAISEPKTLVDIYPFPIFPSRSG*RHMDGV
Trigger: CACCCCGTCCATGTGCCTCAACCCTGACCTGGAGGG...GAAGATTGGAAATGGATAAATATCTACTAGAGTTTTAGGCTCTGAAATTGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR CAA 90 bp CGTTTACTCTGTTTACACATTTTGCACTTGGGAGGAGGGAGGCTAAGGCTGGGTCCCAAGAAGGGTCCTTaGAGGGATAAAAGGTACAAA +
Preference number: 5 (lower is better)
Translates to: RLLCLHILHLGGGRLRLGPKKGP*RDKRYK
Trigger: TTTGTACCTTTTATCCCTCAAAGGACCCTTCTTGGG...ACCCAGCCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAAACAGAGTAAACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp CACAGCACACAGTGTACTAAGGTTCTTACTGCGCCAACTTTATTACAGCTAGAAAGAAGGGGTGGAGGGTaGAGAGAGGTTGATGCTGAG +
Preference number: 5 (lower is better)
Translates to: HSTQCTKVLTAPTLLQLERRGGG*REVDAE
Trigger: CTCAGCATCAACCTCTCTCAACCCTCCACCCCTTCT...TTCTAGCTGTAATAAAGTTGGCGCAGTAAGAACCTTAGTACACTGTGTGCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR CAA 90 bp GCCTACTCCCCTAGGACAGGTAAGTCCTCGGAAAGTCTAATCCTCAATCTTTTGCCCAAGAAGGGTCCTTaGAGGGATAAAAGGTACAAA +
Preference number: 5 (lower is better)
Translates to: AYSPRTGKSSESLILNLLPKKGP*RDKRYK
Trigger: TTTGTACCTTTTATCCCTCAAAGGACCCTTCTTGGG...CAAAAGATTGAGGATTAGACTTTCCGAGGACTTACCTGTCCTAGGGGAGTAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp TATGCAAGCCTGAACAAGGGGACCAACATTCCCAAGAAACTGGAACCCAGTCAGTGCCCCTCCACTTTTTaGCATCTACTCTCACTAAAT +
Preference number: 5 (lower is better)
Translates to: YASLNKGTNIPKKLEPSQCPSTF*HLLSLN
Trigger: ATTTAGTGAGAGTAGATGCAAAAAAGTGGAGGGGCA...CTGACTGGGTTCCAGTTTCTTGGGAATGTTGGTCCCCTTGTTCAGGCTTGCATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp GGGCAGGAGAGAAAACCACTTAGACTGCACTTTTCTGTTCCGTTTACTCTGTTTTTACACATTTTGCACTaGGGAGGAGGGAGGCTAAGG +
Preference number: 5 (lower is better)
Translates to: GQERKPLRLHFSVPFTLFLHILH*GGGRLR
Trigger: CCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAA...AAACAGAGTAAACGGAACAGAAAAGTGCAGTCTAAGTGGTTTTCTCTCCTGCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR CAA 90 bp GACTTGGAAGAGATCCTCATGGTAACCATTCACCAGAGGAATCCTGGGATGAACTTCTCGCCTTTCAGTTaGTTAGTTACACATGGCACG +
Preference number: 5 (lower is better)
Translates to: DLEEILMVTIHQRNPGMNFSPFS*LVTHGT
Trigger: CGTGCCATGTGTAACTAACAAACTGAAAGGCGAGAA...GTTCATCCCAGGATTCCTCTGGTGAATGGTTACCATGAGGATCTCTTCCAAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR CAA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCCAACTGGTGCAGCTaGGTCAAATCTGGCTGTGGA +
Preference number: 5 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYANWCS*VKSGCG
Trigger: TCCACAGCCAGATTTGACCAAGCTGCACCAGTTGGC...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGGCCAACTGGTGCAGCTaGGTCAAATCTGGCTGTGGA +
Preference number: 5 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKANWCS*VKSGCG
Trigger: TCCACAGCCAGATTTGACCAAGCTGCACCAGTTGGC...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATTTACACATTTTGCACTaGGGAGGAGGGAGGCTAAGG +
Preference number: 5 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYLHILH*GGGRLR
Trigger: CCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAA...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp CCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATGCCCTAATCCTCAATCTTTaGGGCACAAGTTTTATAAGG +
Preference number: 5 (lower is better)
Translates to: PKKLEPSQTYDQLLNVYALILNL*GTSFIR
Trigger: CCTTATAAAACTTGTGCCCAAAAGATTGAGGATTAG...GGCATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATCTGTTGAGGGTTTTCTaGATGAATGAATGGGGTACC +
Preference number: 5 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYLLRVF*MNEWGT
Trigger: GGTACCCCATTCATTCATCAAGAAAACCCTCAACAG...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp TTCCTTATATTCAGCAAGCAACAAGGCAATAGAAAAGCCAGGGTTGTCTTTATAATGCAGGCCCAGCTGTaGAGGGTTTTCTTGATGAAT +
Preference number: 5 (lower is better)
Translates to: FLIFSKQQGNRKARVVFIMQAQL*RVFLMN
Trigger: ATTCATCAAGAAAACCCTCAACAGCTGGGCCTGCAT...TATAAAGACAACCCTGGCTTTTCTATTGCCTTGTTGCTTGCTGAATATAAGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
CDS-3UTR CAA 90 bp GGAAGTGGTAAAATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAATTACACATTTTGCACTaGGGAGGAGGGAGGCTAAGG +
Preference number: 5 (lower is better)
Translates to: GSGKIEENILTGIKASIQLHILH*GGGRLR
Trigger: CCTTAGCCTCCCTCCTCCCAAGTGCAAAATGTGTAA...TTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATTTTACCACTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGATGCAGGCCCAGCTGTaGAGGGTTTTCTTGATGAAT +
Preference number: 5 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKMQAQL*RVFLMN
Trigger: ATTCATCAAGAAAACCCTCAACAGCTGGGCCTGCAT...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGCCCAAGAAGGGTCCTTaGAGGGATAAAAGGTACAAA +
Preference number: 5 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKPKKGP*RDKRYK
Trigger: TTTGTACCTTTTATCCCTCAAAGGACCCTTCTTGGG...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp CAAAAACTCAAGCAGCCATTCGAGTTTCATTCCAACACCAAATTCAGTAACATCTTCCCTTTTTGTTCTTaGTCCCACTCTTCCCTTATT +
Preference number: 5 (lower is better)
Translates to: QKLKQPFEFHSNTKFSNIFPFCS*SHSSLI
Trigger: AATAAGGGAAGAGTGGGACAAAGAACAAAAAGGGAA...GATGTTACTGAATTTGGTGTTGGAATGAAACTCGAATGGCTGCTTGAGTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000550585.5
CDS-3UTR CAA 90 bp CATCTGAGAAGTCAGATAAACTTCCTCACTAGTGAAGCTTGTTGCCAATTACAGGACTATAAAATTCACTaGGGATTCAAAAAGCCCATG +
Preference number: 5 (lower is better)
Translates to: HLRSQINFLTSEACCQLQDYKIH*GFKKPM
Trigger: CATGGGCTTTTTGAATCCCAAGTGAATTTTATAGTC...CTGTAATTGGCAACAAGCTTCACTAGTGAGGAAGTTTATCTGACTTCTCAGATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS-3UTR CAA 90 bp ATTCCCAAGAAACTGGAACCCAGTCAGACATATGATCAACTGCTTAATGTGTATCTAATCCTCAATCTTTaGGGCACAAGTTTTATAAGG +
Preference number: 5 (lower is better)
Translates to: IPKKLEPSQTYDQLLNVYLILNL*GTSFIR
Trigger: CCTTATAAAACTTGTGCCCAAAAGATTGAGGATTAG...ATACACATTAAGCAGTTGATCATATGTCTGACTGGGTTCCAGTTTCTTGGGAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp AATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAAAACCCAAGAAGCTAATCCTCAATCTTTaGGGCACAAGTTTTATAAGG +
Preference number: 5 (lower is better)
Translates to: NRRKHLNRNKGFHSKPKKLILNL*GTSFIR
Trigger: CCTTATAAAACTTGTGCCCAAAAGATTGAGGATTAG...CTTCTTGGGTTTTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS-3UTR CAA 90 bp GGAAGTGGTAAAATAGAAGAAAACATCTTAACCGGAATAAAGGCTTCCATTCAACTAATCCTCAATCTTTaGGGCACAAGTTTTATAAGG +
Preference number: 5 (lower is better)
Translates to: GSGKIEENILTGIKASIQLILNL*GTSFIR
Trigger: CCTTATAAAACTTGTGCCCAAAAGATTGAGGATTAG...TTGAATGGAAGCCTTTATTCCGGTTAAGATGTTTTCTTCTATTTTACCACTTCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000437231.5
ENST00000447282.5
ENST00000455667.7
ENST00000546463.6
ENST00000547859.2
CDS CCA 72 bp GAGCCAGGAGAGGGATGGGTTTCATGCCAAGCAGACTaGAGACACAAGGGGCGGTCGGAAGAGGGTTGGGGA +
Preference number: 6 (lower is better)
Translates to: EPGEGWVSCQAD*RHKGRSEEGWG
Trigger: TCCCCAACCCTCTTCCGACCGCCCCTTGTGTCTCCAGTCTGCTTGGCATGAAACCCATCCCTCTCCTGGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS CAA 90 bp CGAGGGGGTGGTGGTGGAGGAGGAAGAAGAAGAAGGGGTGGAGGGTaGAGAGAGGTTGATGCTGAGGTGATCAGGGATCGTGACGGAGGC +
Preference number: 6 (lower is better)
Translates to: RGGGGGGGRRRRGGG*REVDAEVIRDRDGG
Trigger: GCCTCCGTCACGATCCCTGATCACCTCAGCATCAACCTCTCTCAACCCTCCACCCCTTCTTCTTCTTCCTCCTCCACCACCACCCCCTCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000553064.6
CDS GCA 72 bp GTCAGGATGGGCTCAAAGAAATATCAGCCTACCCTTTaGCTGACAAGCATCCCCAAACCTCACCCCCAAACC +
Preference number: 6 (lower is better)
Translates to: VRMGSKKYQPTL*LTSIPKPHPQT
Trigger: GGTTTGGGGGTGAGGTTTGGGGATGCTTGTCAGGCAAAGGGTAGGCTGATATTTCTTTGAGCCCATCCTGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000547987.2
CDS CCA 72 bp CATCAGCAAATACCCGTACCCATCTTTAACAACACCTaGACTGAACCAGGCCAGCTGGCTAACACTCAAGCT +
Preference number: 6 (lower is better)
Translates to: HQQIPVPIFNNT*TEPGQLANTQA
Trigger: AGCTTGAGTGTTAGCCAGCTGGCCTGGTTCAGTCCAGGTGTTGTTAAAGATGGGTACGGGTATTTGCTGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000547048.5
CDS CCA 72 bp CCCAGCATCATTAGCTGTTGGGATTCATCACTAACTTaGAAGCCTCCAAAGAGGAAAGAGTGGGGGAGAAGG +
Preference number: 6 (lower is better)
Translates to: PSIISCWDSSLT*KPPKRKEWGRR
Trigger: CCTTCTCCCCCACTCTTTCCTCTTTGGAGGCTTCCAAGTTAGTGATGAATCCCAACAGCTAATGATGCTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000547048.5
ENST00000550733.1
CDS CCA 72 bp CCATCTTTAACAACACCTGGACTGAACCAGGCCAGCTaGCTAACACTCAAGCTTAGTCCTGATCTCAGCTAT +
Preference number: 6 (lower is better)
Translates to: PSLTTPGLNQAS*LTLKLSPDLSY
Trigger: ATAGCTGAGATCAGGACTAAGCTTGAGTGTTAGCCAGCTGGCCTGGTTCAGTCCAGGTGTTGTTAAAGATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000547048.5
CDS GCA 72 bp CTAACACTCAAGCTTAGTCCTGATCTCAGCTATGGCTaGTGTCTCATCATTTTTAGAAGGGGGTTGGCCAGA +
Preference number: 6 (lower is better)
Translates to: LTLKLSPDLSYG*CLIIFRRGLAR
Trigger: TCTGGCCAACCCCCTTCTAAAAATGATGAGACAGCAGCCATAGCTGAGATCAGGACTAAGCTTGAGTGTTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000547048.5
CDS CCA 72 bp AAGGAAATAAACTGGAAACCCAGCATCATTAGCTGTTaGGATTCATCACTAACTTGGAAGCCTCCAAAGAGG +
Preference number: 6 (lower is better)
Translates to: KEINWKPSIISC*DSSLTWKPPKR
Trigger: CCTCTTTGGAGGCTTCCAAGTTAGTGATGAATCCCAACAGCTAATGATGCTGGGTTTCCAGTTTATTTCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000547048.5
ENST00000550733.1
CDS CAA 72 bp GCAATGGTTCTAAGGAAACTGCTGAACGTGCACCACTaGTCCTTCAGCAGAAAAAGCTTCAAAGAATTCAGA +
Preference number: 6 (lower is better)
Translates to: AMVLRKLLNVHH*SFSRKSFKEFR
Trigger: TCTGAATTCTTTGAAGCTTTTTCTGCTGAAGGACAAGTGGTGCACGTTCAGCAGTTTCCTTAGAACCATTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000552980.6
CDS CCA 72 bp CCAATATTATGCCTGTTAATGGGTACCATGGACTTCTaGCACACATGCAGAGTTGCTTTAAATATACCTGTA +
Preference number: 6 (lower is better)
Translates to: PILCLLMGTMDF*HTCRVALNIPV
Trigger: TACAGGTATATTTAAAGCAACTCTGCATGTGTGCCAGAAGTCCATGGTACCCATTAACAGGCATAATATTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000547048.5