Pregenerated sensors for PCAT6 (Homo sapiens)
Ensembl gene IDs: ENSG00000228288Ensembl transcript IDs: ENST00000417262.5, ENST00000425295.1, ENST00000553157.1, ENST00000660963.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CGGCCGCCTGGGCTGCAGCTCCGCTATGGCCTAGGAACCCGAACCTaGCCCCGCCTAGGCCTCGCACCCAGCCCTCTGGGAGCTCCGGCC | + |
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Preference number: 5 (lower is better) Translates to: RPPGLQLRYGLGTRT*PRLGLAPSPLGAPA Trigger: GGCCGGAGCTCCCAGAGGGCTGGGTGCGAGGCCTAGGCGGGGTCAGGTTCGGGTTCCTAGGCCATAGCGGAGCTGCAGCCCAGGCGGCCG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000417262.5 ENST00000425295.1 ENST00000553157.1 ENST00000660963.1 |
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| CDS CCA 90 bp | GCGGGGCTGGGTTCCGCTCCGGCCGCCTGGGCTGCAGCTCCGCTATaGCCTAGGAACCCGAACCTGACCCCGCCTAGGCCTCGCACCCAG | + |
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Preference number: 5 (lower is better) Translates to: AGLGSAPAAWAAAPL*PRNPNLTPPRPRTQ Trigger: CTGGGTGCGAGGCCTAGGCGGGGTCAGGTTCGGGTTCCTAGGCCATAGCGGAGCTGCAGCCCAGGCGGCCGGAGCGGAACCCAGCCCCGC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000417262.5 ENST00000425295.1 ENST00000553157.1 ENST00000660963.1 |
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| CDS CCA 90 bp | GGAGACGTGGCACTCGGAGCGGGGCTGGGTTCCGCTCCGGCCGCCTaGGCTGCAGCTCCGCTATGGCCTAGGAACCCGAACCTGACCCCG | + |
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Preference number: 5 (lower is better) Translates to: GDVALGAGLGSAPAA*AAAPLWPRNPNLTP Trigger: CGGGGTCAGGTTCGGGTTCCTAGGCCATAGCGGAGCTGCAGCCCAGGCGGCCGGAGCGGAACCCAGCCCCGCTCCGAGTGCCACGTCTCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000417262.5 ENST00000425295.1 ENST00000553157.1 ENST00000660963.1 |
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| CDS CCA 90 bp | AGAGTAAGGAGGGGGTTCCTGGAGACGTGGCACTCGGAGCGGGGCTaGGTTCCGCTCCGGCCGCCTGGGCTGCAGCTCCGCTATGGCCTA | + |
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Preference number: 5 (lower is better) Translates to: RVRRGFLETWHSERG*VPLRPPGLQLRYGL Trigger: TAGGCCATAGCGGAGCTGCAGCCCAGGCGGCCGGAGCGGAACCCAGCCCCGCTCCGAGTGCCACGTCTCCAGGAACCCCCTCCTTACTCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000417262.5 ENST00000425295.1 ENST00000553157.1 ENST00000660963.1 |
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| CDS CCA 90 bp | AGCCGGTGCACTGGAGACTGGGGGAGACGAGAGGATCCACCGGGTTaGGAGGGGAAGGGTGGTGGTAGAAGCACGAGCAAGGCAGAGACC | + |
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Preference number: 5 (lower is better) Translates to: SRCTGDWGRREDPPG*EGKGGGRSTSKAET Trigger: GGTCTCTGCCTTGCTCGTGCTTCTACCACCACCCTTCCCCTCCCAACCCGGTGGATCCTCTCGTCTCCCCCAGTCTCCAGTGCACCGGCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000417262.5 ENST00000660963.1 |
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| CDS CCA 90 bp | AGATGGACTGCGCAGAGGACGAGGGAAAGCCGGTGCACTGGAGACTaGGGGAGACGAGAGGATCCACCGGGTTGGGAGGGGAAGGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: RWTAQRTRESRCTGD*GRREDPPGWEGKGG Trigger: ACCACCCTTCCCCTCCCAACCCGGTGGATCCTCTCGTCTCCCCCAGTCTCCAGTGCACCGGCTTTCCCTCGTCCTCTGCGCAGTCCATCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000417262.5 ENST00000660963.1 |
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| CDS GCA 90 bp | AGAGATGAGCTGAGATGGACTGCGCAGAGGACGAGGGAAAGCCGGTaGACTGGAGACTGGGGGAGACGAGAGGATCCACCGGGTTGGGAG | + |
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Preference number: 5 (lower is better) Translates to: RDELRWTAQRTRESR*TGDWGRREDPPGWE Trigger: CTCCCAACCCGGTGGATCCTCTCGTCTCCCCCAGTCTCCAGTGCACCGGCTTTCCCTCGTCCTCTGCGCAGTCCATCTCAGCTCATCTCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000417262.5 ENST00000660963.1 |
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| CDS GCA 90 bp | TCAAGGCCATTTACCCTCCCTTTCAACAAATATTTGTGGAGCGTGTaGCACGTGCCGGAAGGAACGCGAGGAGCGCCTCATCACCAGGCG | + |
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Preference number: 5 (lower is better) Translates to: SRPFTLPFNKYLWSV*HVPEGTRGAPHHQA Trigger: CGCCTGGTGATGAGGCGCTCCTCGCGTTCCTTCCGGCACGTGGCACACGCTCCACAAATATTTGTTGAAAGGGAGGGTAAATGGCCTTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553157.1 |
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| CDS TCA 90 bp | CACCGAGAGATGGTGAGGAGAGATGATGGCATTGAATTGGAGAGATaGGCTGAGATGGACTGCGCAGAGGACGAGGGAAAGCCGGTGCAC | + |
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Preference number: 5 (lower is better) Translates to: HREMVRRDDGIELER*AEMDCAEDEGKPVH Trigger: GTGCACCGGCTTTCCCTCGTCCTCTGCGCAGTCCATCTCAGCTCATCTCTCCAATTCAATGCCATCATCTCTCCTCACCATCTCTCGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000417262.5 ENST00000425295.1 ENST00000660963.1 |
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| CDS GCA 90 bp | CATTTACCCTCCCTTTCAACAAATATTTGTGGAGCGTGTGCCACGTaGCGGAAGGAACGCGAGGAGCGCCTCATCACCAGGCGGGTGTAT | + |
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Preference number: 5 (lower is better) Translates to: HLPSLSTNICGACAT*RKEREERLITRRVY Trigger: ATACACCCGCCTGGTGATGAGGCGCTCCTCGCGTTCCTTCCGGCACGTGGCACACGCTCCACAAATATTTGTTGAAAGGGAGGGTAAATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553157.1 |
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| CDS CCA 72 bp | AGGGGGTTCCTGGAGACGTGGCACTCGGAGCGGGGCTaGGTTCCGCTCCGGCCGCCTGGGCTGCAGCTCCGC | + |
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Preference number: 6 (lower is better) Translates to: RGFLETWHSERG*VPLRPPGLQLR Trigger: GCGGAGCTGCAGCCCAGGCGGCCGGAGCGGAACCCAGCCCCGCTCCGAGTGCCACGTCTCCAGGAACCCCCT 75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000417262.5 ENST00000425295.1 ENST00000553157.1 ENST00000660963.1 |
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| CDS CCA 72 bp | GCACTCGGAGCGGGGCTGGGTTCCGCTCCGGCCGCCTaGGCTGCAGCTCCGCTATGGCCTAGGAACCCGAAC | + |
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Preference number: 6 (lower is better) Translates to: ALGAGLGSAPAA*AAAPLWPRNPN Trigger: GTTCGGGTTCCTAGGCCATAGCGGAGCTGCAGCCCAGGCGGCCGGAGCGGAACCCAGCCCCGCTCCGAGTGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000417262.5 ENST00000425295.1 ENST00000553157.1 ENST00000660963.1 |
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| CDS CCA 72 bp | GGTTCCGCTCCGGCCGCCTGGGCTGCAGCTCCGCTATaGCCTAGGAACCCGAACCTGACCCCGCCTAGGCCT | + |
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Preference number: 6 (lower is better) Translates to: GSAPAAWAAAPL*PRNPNLTPPRP Trigger: AGGCCTAGGCGGGGTCAGGTTCGGGTTCCTAGGCCATAGCGGAGCTGCAGCCCAGGCGGCCGGAGCGGAACC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000417262.5 ENST00000425295.1 ENST00000553157.1 ENST00000660963.1 |
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| CDS TCA 72 bp | GGGCTGCAGCTCCGCTATGGCCTAGGAACCCGAACCTaGCCCCGCCTAGGCCTCGCACCCAGCCCTCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: GLQLRYGLGTRT*PRLGLAPSPLG Trigger: TCCCAGAGGGCTGGGTGCGAGGCCTAGGCGGGGTCAGGTTCGGGTTCCTAGGCCATAGCGGAGCTGCAGCCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000417262.5 ENST00000425295.1 ENST00000553157.1 ENST00000660963.1 |
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| CDS CCA 72 bp | GCGCAGAGGACGAGGGAAAGCCGGTGCACTGGAGACTaGGGGAGACGAGAGGATCCACCGGGTTGGGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: AQRTRESRCTGD*GRREDPPGWEG Trigger: CCCCTCCCAACCCGGTGGATCCTCTCGTCTCCCCCAGTCTCCAGTGCACCGGCTTTCCCTCGTCCTCTGCGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000417262.5 ENST00000660963.1 |
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| CDS CCA 72 bp | TGTTGTCCAAGAGTAAGGAGGGGGTTCCTGGAGACGTaGCACTCGGAGCGGGGCTGGGTTCCGCTCCGGCCG | + |
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Preference number: 6 (lower is better) Translates to: CCPRVRRGFLET*HSERGWVPLRP Trigger: CGGCCGGAGCGGAACCCAGCCCCGCTCCGAGTGCCACGTCTCCAGGAACCCCCTCCTTACTCTTGGACAACA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000417262.5 ENST00000425295.1 ENST00000553157.1 ENST00000660963.1 |
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| CDS GCA 72 bp | CTGAGATGGACTGCGCAGAGGACGAGGGAAAGCCGGTaGACTGGAGACTGGGGGAGACGAGAGGATCCACCG | + |
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Preference number: 6 (lower is better) Translates to: LRWTAQRTRESR*TGDWGRREDPP Trigger: CGGTGGATCCTCTCGTCTCCCCCAGTCTCCAGTGCACCGGCTTTCCCTCGTCCTCTGCGCAGTCCATCTCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000417262.5 ENST00000660963.1 |
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| CDS CCA 72 bp | ATGGACTGCGCAGAGGACGAGGGAAAGCCGGTGCACTaGAGACTGGGGGAGACGAGAGGATCCACCGGGTTG | + |
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Preference number: 6 (lower is better) Translates to: MDCAEDEGKPVH*RLGETRGSTGL Trigger: CAACCCGGTGGATCCTCTCGTCTCCCCCAGTCTCCAGTGCACCGGCTTTCCCTCGTCCTCTGCGCAGTCCAT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000417262.5 ENST00000660963.1 |
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| CDS CCA 72 bp | ACTGGAGACTGGGGGAGACGAGAGGATCCACCGGGTTaGGAGGGGAAGGGTGGTGGTAGAAGCACGAGCAAG | + |
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Preference number: 6 (lower is better) Translates to: TGDWGRREDPPG*EGKGGGRSTSK Trigger: CTTGCTCGTGCTTCTACCACCACCCTTCCCCTCCCAACCCGGTGGATCCTCTCGTCTCCCCCAGTCTCCAGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000417262.5 ENST00000660963.1 |
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| CDS GCA 72 bp | TCCCTTTCAACAAATATTTGTGGAGCGTGTGCCACGTaGCGGAAGGAACGCGAGGAGCGCCTCATCACCAGG | + |
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Preference number: 6 (lower is better) Translates to: SLSTNICGACAT*RKEREERLITR Trigger: CCTGGTGATGAGGCGCTCCTCGCGTTCCTTCCGGCACGTGGCACACGCTCCACAAATATTTGTTGAAAGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553157.1 |
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| CDS CAA 90 bp | AGCCACAGAAACTCAAGGCCATTTACCCTCCCTTTCAACAAATATTaGTGGAGCGTGTGCCACGTGCCGGAAGGAACGCGAGGAGCGCCT | + |
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Preference number: 6 (lower is better) Translates to: SHRNSRPFTLPFNKY*WSVCHVPEGTRGAP Trigger: AGGCGCTCCTCGCGTTCCTTCCGGCACGTGGCACACGCTCCACAAATATTTGTTGAAAGGGAGGGTAAATGGCCTTGAGTTTCTGTGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553157.1 |
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| CDS CCA 72 bp | GAGATGATGGCATTGAATTGGAGAGATGAGCTGAGATaGACTGCGCAGAGGACGAGGGAAAGCCGGTGCACT | + |
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Preference number: 6 (lower is better) Translates to: EMMALNWRDELR*TAQRTRESRCT Trigger: AGTGCACCGGCTTTCCCTCGTCCTCTGCGCAGTCCATCTCAGCTCATCTCTCCAATTCAATGCCATCATCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000417262.5 ENST00000425295.1 ENST00000660963.1 |
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| CDS CCA 72 bp | TCAAGGCCATTTACCCTCCCTTTCAACAAATATTTGTaGAGCGTGTGCCACGTGCCGGAAGGAACGCGAGGA | + |
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Preference number: 6 (lower is better) Translates to: SRPFTLPFNKYL*SVCHVPEGTRG Trigger: TCCTCGCGTTCCTTCCGGCACGTGGCACACGCTCCACAAATATTTGTTGAAAGGGAGGGTAAATGGCCTTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553157.1 |
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| CDS CAA 72 bp | AACTCAAGGCCATTTACCCTCCCTTTCAACAAATATTaGTGGAGCGTGTGCCACGTGCCGGAAGGAACGCGA | + |
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Preference number: 6 (lower is better) Translates to: NSRPFTLPFNKY*WSVCHVPEGTR Trigger: TCGCGTTCCTTCCGGCACGTGGCACACGCTCCACAAATATTTGTTGAAAGGGAGGGTAAATGGCCTTGAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553157.1 |
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