Pregenerated sensors for PCAT4 (Homo sapiens)
Ensembl gene IDs: ENSG00000251321Ensembl transcript IDs: ENST00000504263.1, ENST00000514836.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TTTCACTCTTCTGGAGGCTGGATGTCTGAGATCAGGGTACCAGCATaGTTAGGTTCTGTTGAGGGCTCTCTTCTGGGTTGTAGACTTCCA | + |
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Preference number: 5 (lower is better) Translates to: FHSSGGWMSEIRVPA*LGSVEGSLLGCRLP Trigger: TGGAAGTCTACAACCCAGAAGAGAGCCCTCAACAGAACCTAACCATGCTGGTACCCTGATCTCAGACATCCAGCCTCCAGAAGAGTGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000514836.1 |
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| CDS GCA 90 bp | TTTCAGTATTTGCTGAAAGATGACATCCCCCTTGCCTTAATCATGTaGCAGATTACTCGTAAACCTGGACCATATGCCACTGCAATTTGC | + |
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Preference number: 5 (lower is better) Translates to: FQYLLKDDIPLALIM*QITRKPGPYATAIC Trigger: GCAAATTGCAGTGGCATATGGTCCAGGTTTACGAGTAATCTGGCACATGATTAAGGCAAGGGGGATGTCATCTTTCAGCAAATACTGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504263.1 |
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| CDS TCA 90 bp | TTGAACATAAAGTATGGCTTATTTAAAAGACATGACATCGCATCGTaGAAAGGGACTCATATACCTTTCACATTCCCCGTGGTGGAGAGT | + |
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Preference number: 5 (lower is better) Translates to: LNIKYGLFKRHDIAS*KGTHIPFTFPVVES Trigger: ACTCTCCACCACGGGGAATGTGAAAGGTATATGAGTCCCTTTTCACGATGCGATGTCATGTCTTTTAAATAAGCCATACTTTATGTTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000504263.1 |
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| CDS TCA 72 bp | AAATCCAAGGGGATTAGAATGGCTCAATCCTTACTGTaGACAGAGCAACGGCATAGGGCAGCTGTATGCTCT | + |
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Preference number: 6 (lower is better) Translates to: KSKGIRMAQSLL*TEQRHRAAVCS Trigger: AGAGCATACAGCTGCCCTATGCCGTTGCTCTGTTCACAGTAAGGATTGAGCCATTCTAATCCCCTTGGATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504263.1 |
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| CDS GCA 72 bp | TTGCTGAAAGATGACATCCCCCTTGCCTTAATCATGTaGCAGATTACTCGTAAACCTGGACCATATGCCACT | + |
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Preference number: 6 (lower is better) Translates to: LLKDDIPLALIM*QITRKPGPYAT Trigger: AGTGGCATATGGTCCAGGTTTACGAGTAATCTGGCACATGATTAAGGCAAGGGGGATGTCATCTTTCAGCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504263.1 |
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| CDS CAA 90 bp | GATTCAAGCAGTGTAACCAGGATTTCTCCGGGTCTCTCATCTCTGTaGGTCTCATTTACTTTCACTCCAGATAAGCTTTCTTCATGTTGC | + |
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Preference number: 6 (lower is better) Translates to: DSSSVTRISPGLSSL*VSFTFTPDKLSSCC Trigger: GCAACATGAAGAAAGCTTATCTGGAGTGAAAGTAAATGAGACCAACAGAGATGAGAGACCCGGAGAAATCCTGGTTACACTGCTTGAATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000504263.1 ENST00000514836.1 |
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| CDS GCA 72 bp | TTTAACAGCCATGATGGCCAATTTTATAAATGCACTTaGCACTCACTCTATACAGGGAACAATGTTGTCACT | + |
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Preference number: 6 (lower is better) Translates to: FNSHDGQFYKCT*HSLYTGNNVVT Trigger: AGTGACAACATTGTTCCCTGTATAGAGTGAGTGGCAAGTGCATTTATAAAATTGGCCATCATGGCTGTTAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504263.1 |
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| CDS CAA 90 bp | ACTTCTAGTGATGAGGAATGCAAGAGAGGCATTCTTATTGTTGGTTaGAACCTTCCTTCCTATAATTTTGATTCAATAGTTCTGCCTTTG | + |
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Preference number: 6 (lower is better) Translates to: TSSDEECKRGILIVG*NLPSYNFDSIVLPL Trigger: CAAAGGCAGAACTATTGAATCAAAATTATAGGAAGGAAGGTTCAAACCAACAATAAGAATGCCTCTCTTGCATTCCTCATCACTAGAAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504263.1 |
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| CDS GCA 72 bp | CATAAATTTAACAGCCATGATGGCCAATTTTATAAATaGACTTGCCACTCACTCTATACAGGGAACAATGTT | + |
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Preference number: 6 (lower is better) Translates to: HKFNSHDGQFYK*TCHSLYTGNNV Trigger: AACATTGTTCCCTGTATAGAGTGAGTGGCAAGTGCATTTATAAAATTGGCCATCATGGCTGTTAAATTTATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504263.1 |
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| CDS CAA 72 bp | GTATCTTCCCAGCAGTTAAAAAGGGATTGTGTTCTCTaGCGAATCCTGCTTATTCTCTTTTTATTGAACATA | + |
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Preference number: 6 (lower is better) Translates to: VSSQQLKRDCVL*RILLILFLLNI Trigger: TATGTTCAATAAAAAGAGAATAAGCAGGATTCGCAAGAGAACACAATCCCTTTTTAACTGCTGGGAAGATAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000504263.1 |
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| CDS GCA 72 bp | CTAAAAATCTTATCAGAAACTTCTAGTGATGAGGAATaGAAGAGAGGCATTCTTATTGTTGGTTTGAACCTT | + |
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Preference number: 6 (lower is better) Translates to: LKILSETSSDEE*KRGILIVGLNL Trigger: AAGGTTCAAACCAACAATAAGAATGCCTCTCTTGCATTCCTCATCACTAGAAGTTTCTGATAAGATTTTTAG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504263.1 |
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| CDS CAA 72 bp | GATGAGGAATGCAAGAGAGGCATTCTTATTGTTGGTTaGAACCTTCCTTCCTATAATTTTGATTCAATAGTT | + |
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Preference number: 6 (lower is better) Translates to: DEECKRGILIVG*NLPSYNFDSIV Trigger: AACTATTGAATCAAAATTATAGGAAGGAAGGTTCAAACCAACAATAAGAATGCCTCTCTTGCATTCCTCATC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504263.1 |
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