Pregenerated sensors for PCAT18 (Homo sapiens)
Ensembl gene IDs: ENSG00000265369Ensembl transcript IDs: ENST00000579458.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ATTGTGTCCTGGAGCCCAGCCCAAAAGGCCTCCCAATCCCTGCCCTaGTTTGTTTTGGTCAAGAAGGGTATCTCTGGAGCACACTTACCA | + |
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Preference number: 5 (lower is better) Translates to: IVSWSPAQKASQSLP*FVLVKKGISGAHLP Trigger: TGGTAAGTGTGCTCCAGAGATACCCTTCTTGACCAAAACAAAGCAGGGCAGGGATTGGGAGGCCTTTTGGGCTGGGCTCCAGGACACAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS CCA 90 bp | GGAGCCCAGCCCAAAAGGCCTCCCAATCCCTGCCCTGCTTTGTTTTaGTCAAGAAGGGTATCTCTGGAGCACACTTACCATGGTAGATCT | + |
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Preference number: 5 (lower is better) Translates to: GAQPKRPPNPCPALF*SRRVSLEHTYHGRS Trigger: AGATCTACCATGGTAAGTGTGCTCCAGAGATACCCTTCTTGACCAAAACAAAGCAGGGCAGGGATTGGGAGGCCTTTTGGGCTGGGCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS CCA 90 bp | TGGGACAACGTAGCTGAAGAAATATTGGAATGTTCCTGCTCAGATTaGCCTCAGCCTGAAAACTGTTTACTTCCTGCCCAAATCTGGGGC | + |
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Preference number: 5 (lower is better) Translates to: WDNVAEEILECSCSD*PQPENCLLPAQIWG Trigger: GCCCCAGATTTGGGCAGGAAGTAAACAGTTTTCAGGCTGAGGCCAATCTGAGCAGGAACATTCCAATATTTCTTCAGCTACGTTGTCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS TCA 90 bp | TTCCAGCATTCCCTCATGTCTTCCTTCTTCCCGTGGATGTCCAGATaGAGCACTCCACACTCCTTTGAGAGAGATAAACAAGGAAGATGT | + |
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Preference number: 5 (lower is better) Translates to: FQHSLMSSFFPWMSR*STPHSFERDKQGRC Trigger: ACATCTTCCTTGTTTATCTCTCTCAAAGGAGTGTGGAGTGCTTCATCTGGACATCCACGGGAAGAAGGAAGACATGAGGGAATGCTGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS GCA 90 bp | GTGAAGTGCTGGGACAACGTAGCTGAAGAAATATTGGAATGTTCCTaGTCAGATTGGCCTCAGCCTGAAAACTGTTTACTTCCTGCCCAA | + |
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Preference number: 5 (lower is better) Translates to: VKCWDNVAEEILECS*SDWPQPENCLLPAQ Trigger: TTGGGCAGGAAGTAAACAGTTTTCAGGCTGAGGCCAATCTGAGCAGGAACATTCCAATATTTCTTCAGCTACGTTGTCCCAGCACTTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS CCA 90 bp | CTCCCAATCCCTGCCCTGCTTTGTTTTGGTCAAGAAGGGTATCTCTaGAGCACACTTACCATGGTAGATCTTGATTTGTATCAGGTATTT | + |
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Preference number: 5 (lower is better) Translates to: LPIPALLCFGQEGYL*STLTMVDLDLYQVF Trigger: AAATACCTGATACAAATCAAGATCTACCATGGTAAGTGTGCTCCAGAGATACCCTTCTTGACCAAAACAAAGCAGGGCAGGGATTGGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS CCA 90 bp | CTTAGGATTCTTTCTCTCTGCGTCCTAAATTTGGCTTTGAGACCTTaGATGATGATTCTCCTAATCTGGTCAATGGACCACCTGCAAGAA | + |
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Preference number: 5 (lower is better) Translates to: LRILSLCVLNLALRP*MMILLIWSMDHLQE Trigger: TTCTTGCAGGTGGTCCATTGACCAGATTAGGAGAATCATCATCCAAGGTCTCAAAGCCAAATTTAGGACGCAGAGAGAAAGAATCCTAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS TCA 90 bp | TCAGACAATCCTGGTTTCAAATCGGTTTCATTGTTCATCCTCATGTaGTGTTTGGCAAGAAATAAAACATTTCTGCGTTCAGTTTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: SDNPGFKSVSLFILM*CLARNKTFLRSVSL Trigger: CAAGGAAACTGAACGCAGAAATGTTTTATTTCTTGCCAAACATCACATGAGGATGAACAATGAAACCGATTTGAAACCAGGATTGTCTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS GCA 72 bp | TGGAGCCCAGCCCAAAAGGCCTCCCAATCCCTGCCCTaGTTTGTTTTGGTCAAGAAGGGTATCTCTGGAGCA | + |
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Preference number: 6 (lower is better) Translates to: WSPAQKASQSLP*FVLVKKGISGA Trigger: TGCTCCAGAGATACCCTTCTTGACCAAAACAAAGCAGGGCAGGGATTGGGAGGCCTTTTGGGCTGGGCTCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS GCA 72 bp | TGTCCTGGAGCCCAGCCCAAAAGGCCTCCCAATCCCTaGCCTGCTTTGTTTTGGTCAAGAAGGGTATCTCTG | + |
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Preference number: 6 (lower is better) Translates to: CPGAQPKRPPNP*PALFWSRRVSL Trigger: CAGAGATACCCTTCTTGACCAAAACAAAGCAGGGCAGGGATTGGGAGGCCTTTTGGGCTGGGCTCCAGGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS CAA 90 bp | TGTCCTGGAGCCCAGCCCAAAAGGCCTCCCAATCCCTGCCCTGCTTaGTTTTGGTCAAGAAGGGTATCTCTGGAGCACACTTACCATGGT | + |
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Preference number: 6 (lower is better) Translates to: CPGAQPKRPPNPCPA*FWSRRVSLEHTYHG Trigger: ACCATGGTAAGTGTGCTCCAGAGATACCCTTCTTGACCAAAACAAAGCAGGGCAGGGATTGGGAGGCCTTTTGGGCTGGGCTCCAGGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS CAA 72 bp | CCAGTGAAGTGCTGGGACAACGTAGCTGAAGAAATATaGGAATGTTCCTGCTCAGATTGGCCTCAGCCTGAA | + |
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Preference number: 6 (lower is better) Translates to: PVKCWDNVAEEI*ECSCSDWPQPE Trigger: TTCAGGCTGAGGCCAATCTGAGCAGGAACATTCCAATATTTCTTCAGCTACGTTGTCCCAGCACTTCACTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS CAA 90 bp | CTTCCTTCTTCCCGTGGATGTCCAGATGAAGCACTCCACACTCCTTaGAGAGAGATAAACAAGGAAGATGTGTGCTTAGTCCAGAGGTTT | + |
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Preference number: 6 (lower is better) Translates to: LPSSRGCPDEALHTP*REINKEDVCLVQRF Trigger: AAACCTCTGGACTAAGCACACATCTTCCTTGTTTATCTCTCTCAAAGGAGTGTGGAGTGCTTCATCTGGACATCCACGGGAAGAAGGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS TCA 72 bp | AATATTGGAATGTTCCTGCTCAGATTGGCCTCAGCCTaGAAACTGTTTACTTCCTGCCCAAATCTGGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: NIGMFLLRLASA*KLFTSCPNLGP Trigger: AGGCCCCAGATTTGGGCAGGAAGTAAACAGTTTTCAGGCTGAGGCCAATCTGAGCAGGAACATTCCAATATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS TCA 72 bp | AAAAGGTTAACCAGTGAAGTGCTGGGACAACGTAGCTaGAGAAATATTGGAATGTTCCTGCTCAGATTGGCC | + |
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Preference number: 6 (lower is better) Translates to: KRLTSEVLGQRS*RNIGMFLLRLA Trigger: GGCCAATCTGAGCAGGAACATTCCAATATTTCTTCAGCTACGTTGTCCCAGCACTTCACTGGTTAACCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS CCA 72 bp | CTTTCTCTCTGCGTCCTAAATTTGGCTTTGAGACCTTaGATGATGATTCTCCTAATCTGGTCAATGGACCAC | + |
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Preference number: 6 (lower is better) Translates to: LSLCVLNLALRP*MMILLIWSMDH Trigger: GTGGTCCATTGACCAGATTAGGAGAATCATCATCCAAGGTCTCAAAGCCAAATTTAGGACGCAGAGAGAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS GCA 72 bp | TGGGACAACGTAGCTGAAGAAATATTGGAATGTTCCTaGTCAGATTGGCCTCAGCCTGAAAACTGTTTACTT | + |
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Preference number: 6 (lower is better) Translates to: WDNVAEEILECS*SDWPQPENCLL Trigger: AAGTAAACAGTTTTCAGGCTGAGGCCAATCTGAGCAGGAACATTCCAATATTTCTTCAGCTACGTTGTCCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS CAA 72 bp | TCTTTCTCTCTGCGTCCTAAATTTGGCTTTGAGACCTaGGATGATGATTCTCCTAATCTGGTCAATGGACCA | + |
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Preference number: 6 (lower is better) Translates to: SFSLRPKFGFET*DDDSPNLVNGP Trigger: TGGTCCATTGACCAGATTAGGAGAATCATCATCCAAGGTCTCAAAGCCAAATTTAGGACGCAGAGAGAAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS CCA 72 bp | GAAAAAGGACCCAGAGATGTTGGAATCAGACAATCCTaGTTTCAAATCGGTTTCATTGTTCATCCTCATGTG | + |
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Preference number: 6 (lower is better) Translates to: EKGPRDVGIRQS*FQIGFIVHPHV Trigger: CACATGAGGATGAACAATGAAACCGATTTGAAACCAGGATTGTCTGATTCCAACATCTCTGGGTCCTTTTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS CAA 72 bp | TTGCAGCATATCAGAGTGAAAAAGGACCCAGAGATGTaGGAATCAGACAATCCTGGTTTCAAATCGGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: LQHIRVKKDPEM*ESDNPGFKSVS Trigger: TGAAACCGATTTGAAACCAGGATTGTCTGATTCCAACATCTCTGGGTCCTTTTTCACTCTGATATGCTGCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS TCA 72 bp | ATTAAGATGATTAACGATCAACTCAGGCCTGAAAAATaGGTAACTGTAGGTCATGTTGCCATGAAGTTACGA | + |
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Preference number: 6 (lower is better) Translates to: IKMINDQLRPEK*VTVGHVAMKLR Trigger: TCGTAACTTCATGGCAACATGACCTACAGTTACTCATTTTTCAGGCCTGAGTTGATCGTTAATCATCTTAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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| CDS TCA 72 bp | CCTGGTTTCAAATCGGTTTCATTGTTCATCCTCATGTaGTGTTTGGCAAGAAATAAAACATTTCTGCGTTCA | + |
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Preference number: 6 (lower is better) Translates to: PGFKSVSLFILM*CLARNKTFLRS Trigger: TGAACGCAGAAATGTTTTATTTCTTGCCAAACATCACATGAGGATGAACAATGAAACCGATTTGAAACCAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000579458.1 |
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