Pregenerated sensors for PAXIP1-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000273344Ensembl transcript IDs: ENST00000608317.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGCGGGGCTTCCCGGGGCTGGAGCTGCACCGCGGGCTCTGCTGTCTaGGACTCTCCTCCAGCGCGGACCCGACAGGACGCCAGGGACCAG | + |
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Preference number: 5 (lower is better) Translates to: RGASRGWSCTAGSAV*DSPPARTRQDARDQ Trigger: CTGGTCCCTGGCGTCCTGTCGGGTCCGCGCTGGAGGAGAGTCCCAGACAGCAGAGCCCGCGGTGCAGCTCCAGCCCCGGGAAGCCCCGCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS GCA 90 bp | CTGAGGCCTTGCGGAGACCCCAGGACTCGCCGCGGAGGCCACCAGTaGGCGTCTCGCGTGGCGCTACGGCCTCGGGAATTCCGTCACGGC | + |
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Preference number: 5 (lower is better) Translates to: LRPCGDPRTRRGGHQ*ASRVALRPREFRHG Trigger: GCCGTGACGGAATTCCCGAGGCCGTAGCGCCACGCGAGACGCGCACTGGTGGCCTCCGCGGCGAGTCCTGGGGTCTCCGCAAGGCCTCAG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS GCA 90 bp | GAGCGGCTCAGGTACTACTCCAGGTCCGGCCGCACTCGCGGCCACTaGGAACAGCCGGGACACCCAATCCCACTCCGCCCAGGGCCAAGA | + |
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Preference number: 5 (lower is better) Translates to: ERLRYYSRSGRTRGH*EQPGHPIPLRPGPR Trigger: TCTTGGCCCTGGGCGGAGTGGGATTGGGTGTCCCGGCTGTTCGCAGTGGCCGCGAGTGCGGCCGGACCTGGAGTAGTACCTGAGCCGCTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS TCA 90 bp | AGGTGTCTTGGGCAGGTGATCCCGAGGCCACTCTGCCGTGTTCTGTaGATCTTGGCGGAAGGGAGGCGAGCTGTAAATAAAAGCGTGACC | + |
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Preference number: 5 (lower is better) Translates to: RCLGQVIPRPLCRVL*ILAEGRRAVNKSVT Trigger: GGTCACGCTTTTATTTACAGCTCGCCTCCCTTCCGCCAAGATTCACAGAACACGGCAGAGTGGCCTCGGGATCACCTGCCCAAGACACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS CCA 90 bp | CATGGCCTTAATTTCTTCTCCCAACTTCCGGTCGTGCAGGTGTCTTaGGCAGGTGATCCCGAGGCCACTCTGCCGTGTTCTGTGAATCTT | + |
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Preference number: 5 (lower is better) Translates to: HGLNFFSQLPVVQVS*AGDPEATLPCSVNL Trigger: AAGATTCACAGAACACGGCAGAGTGGCCTCGGGATCACCTGCCCAAGACACCTGCACGACCGGAAGTTGGGAGAAGAAATTAAGGCCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS GCA 90 bp | CCTGGACTCCGGTTTGTTGTGGGATTGGAAATAAACGAGAAAGGCTaGGTTCATCATCATGGCCTTAATTTCTTCTCCCAACTTCCGGTC | + |
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Preference number: 5 (lower is better) Translates to: PGLRFVVGLEINEKG*VHHHGLNFFSQLPV Trigger: GACCGGAAGTTGGGAGAAGAAATTAAGGCCATGATGATGAACGCAGCCTTTCTCGTTTATTTCCAATCCCACAACAAACCGGAGTCCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS GCA 90 bp | TGGGGGAGACACTGCGGGTCTGTCTCAGATTCCTTTAGACACCAATaGTCCACAGTTTTACGACTAGGTAATAGTCCGATAATCACCCAT | + |
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Preference number: 5 (lower is better) Translates to: WGRHCGSVSDSFRHQ*STVLRLGNSPIITH Trigger: ATGGGTGATTATCGGACTATTACCTAGTCGTAAAACTGTGGAGCATTGGTGTCTAAAGGAATCTGAGACAGACCCGCAGTGTCTCCCCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS GCA 72 bp | CGGGGCTTCCCGGGGCTGGAGCTGCACCGCGGGCTCTaGTGTCTGGGACTCTCCTCCAGCGCGGACCCGACA | + |
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Preference number: 6 (lower is better) Translates to: RGFPGLELHRGL*CLGLSSSADPT Trigger: TGTCGGGTCCGCGCTGGAGGAGAGTCCCAGACAGCAGAGCCCGCGGTGCAGCTCCAGCCCCGGGAAGCCCCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS CCA 72 bp | TCCCGGGGCTGGAGCTGCACCGCGGGCTCTGCTGTCTaGGACTCTCCTCCAGCGCGGACCCGACAGGACGCC | + |
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Preference number: 6 (lower is better) Translates to: SRGWSCTAGSAV*DSPPARTRQDA Trigger: GGCGTCCTGTCGGGTCCGCGCTGGAGGAGAGTCCCAGACAGCAGAGCCCGCGGTGCAGCTCCAGCCCCGGGA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS GCA 72 bp | TGCGGAGACCCCAGGACTCGCCGCGGAGGCCACCAGTaGGCGTCTCGCGTGGCGCTACGGCCTCGGGAATTC | + |
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Preference number: 6 (lower is better) Translates to: CGDPRTRRGGHQ*ASRVALRPREF Trigger: GAATTCCCGAGGCCGTAGCGCCACGCGAGACGCGCACTGGTGGCCTCCGCGGCGAGTCCTGGGGTCTCCGCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS CAA 72 bp | CCGGGTCCAGCGCGGTGTAGACCGGGGCCCCGCGCCTaGCTCGGCCAGAGCGGCTCAGGTACTACTCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: PGPARCRPGPRA*LGQSGSGTTPG Trigger: ACCTGGAGTAGTACCTGAGCCGCTCTGGCCGAGCAAGGCGCGGGGCCCCGGTCTACACCGCGCTGGACCCGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS GCA 72 bp | AGGTACTACTCCAGGTCCGGCCGCACTCGCGGCCACTaGGAACAGCCGGGACACCCAATCCCACTCCGCCCA | + |
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Preference number: 6 (lower is better) Translates to: RYYSRSGRTRGH*EQPGHPIPLRP Trigger: TGGGCGGAGTGGGATTGGGTGTCCCGGCTGTTCGCAGTGGCCGCGAGTGCGGCCGGACCTGGAGTAGTACCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS TCA 72 bp | CTCCCAACTTCCGGTCGTGCAGGTGTCTTGGGCAGGTaGTCCCGAGGCCACTCTGCCGTGTTCTGTGAATCT | + |
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Preference number: 6 (lower is better) Translates to: LPTSGRAGVLGR*SRGHSAVFCES Trigger: AGATTCACAGAACACGGCAGAGTGGCCTCGGGATCACCTGCCCAAGACACCTGCACGACCGGAAGTTGGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS TCA 72 bp | GGGCAGGTGATCCCGAGGCCACTCTGCCGTGTTCTGTaGATCTTGGCGGAAGGGAGGCGAGCTGTAAATAAA | + |
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Preference number: 6 (lower is better) Translates to: GQVIPRPLCRVL*ILAEGRRAVNK Trigger: TTTATTTACAGCTCGCCTCCCTTCCGCCAAGATTCACAGAACACGGCAGAGTGGCCTCGGGATCACCTGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS CCA 72 bp | AATTTCTTCTCCCAACTTCCGGTCGTGCAGGTGTCTTaGGCAGGTGATCCCGAGGCCACTCTGCCGTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: NFFSQLPVVQVS*AGDPEATLPCS Trigger: AGAACACGGCAGAGTGGCCTCGGGATCACCTGCCCAAGACACCTGCACGACCGGAAGTTGGGAGAAGAAATT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS CAA 72 bp | ACTACAGGTGCCCACCACACCAGGCTTGATTGTGACTaGACTGTCACCCAGTGTCACATGAGGGCAAGTGTG | + |
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Preference number: 6 (lower is better) Translates to: TTGAHHTRLDCD*TVTQCHMRASV Trigger: CACACTTGCCCTCATGTGACACTGGGTGACAGTCAAGTCACAATCAAGCCTGGTGTGGTGGGCACCTGTAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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| CDS GCA 72 bp | CACTGCGGGTCTGTCTCAGATTCCTTTAGACACCAATaGTCCACAGTTTTACGACTAGGTAATAGTCCGATA | + |
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Preference number: 6 (lower is better) Translates to: HCGSVSDSFRHQ*STVLRLGNSPI Trigger: TATCGGACTATTACCTAGTCGTAAAACTGTGGAGCATTGGTGTCTAAAGGAATCTGAGACAGACCCGCAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000608317.1 |
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