Pregenerated sensors for PATJ-DT (Homo sapiens)

Ensembl gene IDs: ENSG00000271200

Ensembl transcript IDs: ENST00000605725.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AGCGGATTGACCCAACGCTTTCATCGATATCCTCCTCAATTTCCTTaGTCTTGGGTCTCGCTCTACACGCAGGCCTCCAACCACACCGGT	+
Preference number: 5 (lower is better) Translates to: SGLTQRFHRYPPQFP*SWVSLYTQASNHTG Trigger: ACCGGTGTGGTTGGAGGCCTGCGTGTAGAGCGAGACCCAAGATCAAGGAAATTGAGGAGGATATCGATGAAAGCGTTGGGTCAATCCGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000605725.1
CDS CAA 90 bp	AAGCGGATTGACCCAACGCTTTCATCGATATCCTCCTCAATTTCCTaGATCTTGGGTCTCGCTCTACACGCAGGCCTCCAACCACACCGG	+
Preference number: 6 (lower is better) Translates to: KRIDPTLSSISSSIS*ILGLALHAGLQPHR Trigger: CCGGTGTGGTTGGAGGCCTGCGTGTAGAGCGAGACCCAAGATCAAGGAAATTGAGGAGGATATCGATGAAAGCGTTGGGTCAATCCGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000605725.1
CDS CAA 90 bp	ATTGACCCAACGCTTTCATCGATATCCTCCTCAATTTCCTTGATCTaGGGTCTCGCTCTACACGCAGGCCTCCAACCACACCGGTCTGTC	+
Preference number: 6 (lower is better) Translates to: IDPTLSSISSSISLI*GLALHAGLQPHRSV Trigger: GACAGACCGGTGTGGTTGGAGGCCTGCGTGTAGAGCGAGACCCAAGATCAAGGAAATTGAGGAGGATATCGATGAAAGCGTTGGGTCAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000605725.1
CDS TCA 72 bp	ACCCAACGCTTTCATCGATATCCTCCTCAATTTCCTTaGTCTTGGGTCTCGCTCTACACGCAGGCCTCCAAC	+
Preference number: 6 (lower is better) Translates to: TQRFHRYPPQFP*SWVSLYTQASN Trigger: GTTGGAGGCCTGCGTGTAGAGCGAGACCCAAGATCAAGGAAATTGAGGAGGATATCGATGAAAGCGTTGGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000605725.1
CDS CAA 72 bp	ACGCTTTCATCGATATCCTCCTCAATTTCCTTGATCTaGGGTCTCGCTCTACACGCAGGCCTCCAACCACAC	+
Preference number: 6 (lower is better) Translates to: TLSSISSSISLI*GLALHAGLQPH Trigger: GTGTGGTTGGAGGCCTGCGTGTAGAGCGAGACCCAAGATCAAGGAAATTGAGGAGGATATCGATGAAAGCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000605725.1
CDS CAA 72 bp	GACCCAACGCTTTCATCGATATCCTCCTCAATTTCCTaGATCTTGGGTCTCGCTCTACACGCAGGCCTCCAA	+
Preference number: 6 (lower is better) Translates to: DPTLSSISSSIS*ILGLALHAGLQ Trigger: TTGGAGGCCTGCGTGTAGAGCGAGACCCAAGATCAAGGAAATTGAGGAGGATATCGATGAAAGCGTTGGGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000605725.1
CDS CAA 72 bp	AAAGGAAAGGGGCAAAAAGACAAAGTGTTAAGCGGATaGACCCAACGCTTTCATCGATATCCTCCTCAATTT	+
Preference number: 6 (lower is better) Translates to: KGKGQKDKVLSG*TQRFHRYPPQF Trigger: AAATTGAGGAGGATATCGATGAAAGCGTTGGGTCAATCCGCTTAACACTTTGTCTTTTTGCCCCTTTCCTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000605725.1

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