Pregenerated sensors for PARAL1 (Homo sapiens)
Ensembl gene IDs: ENSG00000243961Ensembl transcript IDs: ENST00000449270.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCACTGTCCTTGGGCAGGAAAGACCCTTCTCCTACAGCTGGACAATaGACAGGAAGCAGCTTGGAGCTGACTTTCTCTGCGCCACCTGCC | + |
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Preference number: 5 (lower is better) Translates to: PLSLGRKDPSPTAGQ*TGSSLELTFSAPPA Trigger: GGCAGGTGGCGCAGAGAAAGTCAGCTCCAAGCTGCTTCCTGTCCATTGTCCAGCTGTAGGAGAAGGGTCTTTCCTGCCCAAGGACAGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449270.1 |
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| CDS CCA 90 bp | GAGAGGACCACTGTCCTTGGGCAGGAAAGACCCTTCTCCTACAGCTaGACAATGGACAGGAAGCAGCTTGGAGCTGACTTTCTCTGCGCC | + |
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Preference number: 5 (lower is better) Translates to: ERTTVLGQERPFSYS*TMDRKQLGADFLCA Trigger: GGCGCAGAGAAAGTCAGCTCCAAGCTGCTTCCTGTCCATTGTCCAGCTGTAGGAGAAGGGTCTTTCCTGCCCAAGGACAGTGGTCCTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449270.1 |
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| CDS CCA 90 bp | ACCTCAGAGAGCTCCTTGCTCTTTAGAAGAGAGGACCACTGTCCTTaGGCAGGAAAGACCCTTCTCCTACAGCTGGACAATGGACAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: TSESSLLFRREDHCP*AGKTLLLQLDNGQE Trigger: TTCCTGTCCATTGTCCAGCTGTAGGAGAAGGGTCTTTCCTGCCCAAGGACAGTGGTCCTCTCTTCTAAAGAGCAAGGAGCTCTCTGAGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449270.1 |
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| CDS TCA 72 bp | CTACAGCTGGACAATGGACAGGAAGCAGCTTGGAGCTaGCTTTCTCTGCGCCACCTGCCAAAGGCTCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: LQLDNGQEAAWS*LSLRHLPKAPQ Trigger: CTGAGGAGCCTTTGGCAGGTGGCGCAGAGAAAGTCAGCTCCAAGCTGCTTCCTGTCCATTGTCCAGCTGTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449270.1 |
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| CDS GCA 72 bp | AGGAAGCAGCTTGGAGCTGACTTTCTCTGCGCCACCTaGCAAAGGCTCCTCAGTAGCATTGCTAGAATCCAG | + |
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Preference number: 6 (lower is better) Translates to: RKQLGADFLCAT*QRLLSSIARIQ Trigger: CTGGATTCTAGCAATGCTACTGAGGAGCCTTTGGCAGGTGGCGCAGAGAAAGTCAGCTCCAAGCTGCTTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449270.1 |
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| CDS GCA 72 bp | ACAATGGACAGGAAGCAGCTTGGAGCTGACTTTCTCTaGGCCACCTGCCAAAGGCTCCTCAGTAGCATTGCT | + |
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Preference number: 6 (lower is better) Translates to: TMDRKQLGADFL*ATCQRLLSSIA Trigger: AGCAATGCTACTGAGGAGCCTTTGGCAGGTGGCGCAGAGAAAGTCAGCTCCAAGCTGCTTCCTGTCCATTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449270.1 |
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| CDS CCA 72 bp | AGCTCCTTGCTCTTTAGAAGAGAGGACCACTGTCCTTaGGCAGGAAAGACCCTTCTCCTACAGCTGGACAAT | + |
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Preference number: 6 (lower is better) Translates to: SSLLFRREDHCP*AGKTLLLQLDN Trigger: ATTGTCCAGCTGTAGGAGAAGGGTCTTTCCTGCCCAAGGACAGTGGTCCTCTCTTCTAAAGAGCAAGGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449270.1 |
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| CDS CAA 90 bp | AGAAGCCCATCTGGTCAGAAGCATAGACTACACACTGTTTTTCAGTaGGCTCATGAAGGATGCTCCTCTTGGGCTGTGCTGAGACTAGCA | + |
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Preference number: 6 (lower is better) Translates to: RSPSGQKHRLHTVFQ*AHEGCSSWAVLRLA Trigger: TGCTAGTCTCAGCACAGCCCAAGAGGAGCATCCTTCATGAGCCAACTGAAAAACAGTGTGTAGTCTATGCTTCTGACCAGATGGGCTTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000449270.1 |
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| CDS CCA 72 bp | ACTGTTTTTCAGTTGGCTCATGAAGGATGCTCCTCTTaGGCTGTGCTGAGACTAGCAAAGACAATTGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: TVFQLAHEGCSS*AVLRLAKTIGE Trigger: CTCACCAATTGTCTTTGCTAGTCTCAGCACAGCCCAAGAGGAGCATCCTTCATGAGCCAACTGAAAAACAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000449270.1 |
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