Pregenerated sensors for PANCR (Homo sapiens)
Ensembl gene IDs: ENSG00000250103Ensembl transcript IDs: ENST00000503456.1, ENST00000513690.2
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACAGCTTGGCTGGGTGATTCTGGTTCAGTGTCTCTCATGAGATTGTaGTTGATGTTTCAGCTGGGGCTACAATCCTCTGAAAGCTGTCTG | + |
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Preference number: 5 (lower is better) Translates to: TAWLGDSGSVSLMRL*LMFQLGLQSSESCL Trigger: CAGACAGCTTTCAGAGGATTGTAGCCCCAGCTGAAACATCAACCACAATCTCATGAGAGACACTGAACCAGAATCACCCAGCCAAGCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513690.2 |
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| CDS TCA 90 bp | TCTCAGGAGGTTGCATTTAAGTTGTTTTCTGGGGCTGCCATTATTTaGAGAGCTGGAGAATCTGCTTCCAAGCTCACTCACATGGCTGTT | + |
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Preference number: 5 (lower is better) Translates to: SQEVAFKLFSGAAII*RAGESASKLTHMAV Trigger: AACAGCCATGTGAGTGAGCTTGGAAGCAGATTCTCCAGCTCTTCAAATAATGGCAGCCCCAGAAAACAACTTAAATGCAACCTCCTGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000503456.1 |
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| CDS CCA 90 bp | TTGAAGAGCTGGAGAATCTGCTTCCAAGCTCACTCACATGGCTGTTaGCAGGAGGTTTCAATTTCTCACCATAAAGCTGCTCATGAAATG | + |
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Preference number: 5 (lower is better) Translates to: LKSWRICFQAHSHGC*QEVSISHHKAAHEM Trigger: CATTTCATGAGCAGCTTTATGGTGAGAAATTGAAACCTCCTGCCAACAGCCATGTGAGTGAGCTTGGAAGCAGATTCTCCAGCTCTTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000503456.1 |
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| CDS GCA 90 bp | TTCCATGGATGTTTCATCAAAGGTAACACCATTCTTCCCACTGTTTaGAGTGAAGTGTGTCTAGTTTGTTGTTTAGGTAACAGCGGTAAT | + |
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Preference number: 5 (lower is better) Translates to: FHGCFIKGNTILPTV*SEVCLVCCLGNSGN Trigger: ATTACCGCTGTTACCTAAACAACAAACTAGACACACTTCACTGCAAACAGTGGGAAGAATGGTGTTACCTTTGATGAAACATCCATGGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000503456.1 |
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| CDS GCA 90 bp | GTTGGCAGGAGGTTTCAATTTCTCACCATAAAGCTGCTCATGAAATaGAAATGTTCCATGGATGTTTCATCAAAGGTAACACCATTCTTC | + |
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Preference number: 5 (lower is better) Translates to: VGRRFQFLTIKLLMK*KCSMDVSSKVTPFF Trigger: GAAGAATGGTGTTACCTTTGATGAAACATCCATGGAACATTTGCATTTCATGAGCAGCTTTATGGTGAGAAATTGAAACCTCCTGCCAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000503456.1 |
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| CDS CAA 72 bp | TGGCTGGGTGATTCTGGTTCAGTGTCTCTCATGAGATaGTGGTTGATGTTTCAGCTGGGGCTACAATCCTCT | + |
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Preference number: 6 (lower is better) Translates to: WLGDSGSVSLMR*WLMFQLGLQSS Trigger: AGAGGATTGTAGCCCCAGCTGAAACATCAACCACAATCTCATGAGAGACACTGAACCAGAATCACCCAGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513690.2 |
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| CDS TCA 72 bp | TCTATGGCTCAGGAATTTGGGAACAGCTTGGCTGGGTaGTTCTGGTTCAGTGTCTCTCATGAGATTGTGGTT | + |
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Preference number: 6 (lower is better) Translates to: SMAQEFGNSLAG*FWFSVSHEIVV Trigger: AACCACAATCTCATGAGAGACACTGAACCAGAATCACCCAGCCAAGCTGTTCCCAAATTCCTGAGCCATAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513690.2 |
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| CDS CCA 72 bp | CTGGGTGATTCTGGTTCAGTGTCTCTCATGAGATTGTaGTTGATGTTTCAGCTGGGGCTACAATCCTCTGAA | + |
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Preference number: 6 (lower is better) Translates to: LGDSGSVSLMRL*LMFQLGLQSSE Trigger: TTCAGAGGATTGTAGCCCCAGCTGAAACATCAACCACAATCTCATGAGAGACACTGAACCAGAATCACCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513690.2 |
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| CDS CAA 72 bp | ATTTATTATCTCACACAGTTTCTATGGCTCAGGAATTaGGGAACAGCTTGGCTGGGTGATTCTGGTTCAGTG | + |
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Preference number: 6 (lower is better) Translates to: IYYLTQFLWLRN*GTAWLGDSGSV Trigger: CACTGAACCAGAATCACCCAGCCAAGCTGTTCCCAAATTCCTGAGCCATAGAAACTGTGTGAGATAATAAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513690.2 |
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| CDS GCA 72 bp | TGTTTCATCAAAGGTAACACCATTCTTCCCACTGTTTaGAGTGAAGTGTGTCTAGTTTGTTGTTTAGGTAAC | + |
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Preference number: 6 (lower is better) Translates to: CFIKGNTILPTV*SEVCLVCCLGN Trigger: GTTACCTAAACAACAAACTAGACACACTTCACTGCAAACAGTGGGAAGAATGGTGTTACCTTTGATGAAACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000503456.1 |
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