Pregenerated sensors for PAK1IP1 (Homo sapiens)

Ensembl gene IDs: ENSG00000111845

Ensembl transcript IDs: ENST00000379568.4, ENST00000644756.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TATTTACAGCTACTGCTGACAAGGAGGCAGTGTGAGCATGGTGAGTaGAGTCAGCCACAAGAGTCCATTGCTCGTGGTCGCCGCAAGCCT	+
Preference number: 5 (lower is better) Translates to: YLQLLLTRRQCEHGE*SQPQESIARGRRKP Trigger: AGGCTTGCGGCGACCACGAGCAATGGACTCTTGTGGCTGACTTCACTCACCATGCTCACACTGCCTCCTTGTCAGCAGTAGCTGTAAATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000379568.4 ENST00000644756.2
CDS TCA 90 bp	ATCTTTGCTCCCAGTGACCACAAAACGACTATTTACAGCTACTGCTaGCAAGGAGGCAGTGTGAGCATGGTGAGTGAAGTCAGCCACAAG	+
Preference number: 5 (lower is better) Translates to: IFAPSDHKTTIYSYC*QGGSVSMVSEVSHK Trigger: CTTGTGGCTGACTTCACTCACCATGCTCACACTGCCTCCTTGTCAGCAGTAGCTGTAAATAGTCGTTTTGTGGTCACTGGGAGCAAAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000379568.4 ENST00000644756.2
CDS TCA 72 bp	CTACTGCTGACAAGGAGGCAGTGTGAGCATGGTGAGTaGAGTCAGCCACAAGAGTCCATTGCTCGTGGTCGC	+
Preference number: 6 (lower is better) Translates to: LLLTRRQCEHGE*SQPQESIARGR Trigger: GCGACCACGAGCAATGGACTCTTGTGGCTGACTTCACTCACCATGCTCACACTGCCTCCTTGTCAGCAGTAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000379568.4 ENST00000644756.2
CDS CAA 72 bp	GCAGCTGGAGGAAGGCTTTCTTTCATGTCTGCCACTTaGTCTAGCCACACTCCAAGACACGTCAGCCTGGCA	+
Preference number: 6 (lower is better) Translates to: AAGGRLSFMSAT*SSHTPRHVSLA Trigger: TGCCAGGCTGACGTGTCTTGGAGTGTGGCTAGACAAAGTGGCAGACATGAAAGAAAGCCTTCCTCCAGCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000379568.4 ENST00000644756.2
CDS CAA 90 bp	GAAGGCTCTGCAGCTGGAGGAAGGCTTTCTTTCATGTCTGCCACTTaGTCTAGCCACACTCCAAGACACGTCAGCCTGGCATTAGTGTTT	+
Preference number: 6 (lower is better) Translates to: EGSAAGGRLSFMSAT*SSHTPRHVSLALVF Trigger: AAACACTAATGCCAGGCTGACGTGTCTTGGAGTGTGGCTAGACAAAGTGGCAGACATGAAAGAAAGCCTTCCTCCAGCTGCAGAGCCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000379568.4 ENST00000644756.2
CDS TCA 72 bp	CCCAGTGACCACAAAACGACTATTTACAGCTACTGCTaGCAAGGAGGCAGTGTGAGCATGGTGAGTGAAGTC	+
Preference number: 6 (lower is better) Translates to: PSDHKTTIYSYC*QGGSVSMVSEV Trigger: GACTTCACTCACCATGCTCACACTGCCTCCTTGTCAGCAGTAGCTGTAAATAGTCGTTTTGTGGTCACTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000379568.4 ENST00000644756.2
CDS CCA 72 bp	TGTGCACTGTGTCACCAGGCTCCTTTTTGCCAATTTTaGACTGTTCTTTACTTACAGGAGAAGGCTCTGCAG	+
Preference number: 6 (lower is better) Translates to: CALCHQAPFCQF*TVLYLQEKALQ Trigger: CTGCAGAGCCTTCTCCTGTAAGTAAAGAACAGTCCAAAATTGGCAAAAAGGAGCCTGGTGACACAGTGCACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000379568.4 ENST00000644756.2
CDS CAA 72 bp	TTGTGCACTGTGTCACCAGGCTCCTTTTTGCCAATTTaGGACTGTTCTTTACTTACAGGAGAAGGCTCTGCA	+
Preference number: 6 (lower is better) Translates to: LCTVSPGSFLPI*DCSLLTGEGSA Trigger: TGCAGAGCCTTCTCCTGTAAGTAAAGAACAGTCCAAAATTGGCAAAAAGGAGCCTGGTGACACAGTGCACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000379568.4 ENST00000644756.2
CDS TCA 72 bp	AGAAAGGAAGGTCACCTGTCCTTTGTGAGCTTTAATTaGCTTCAGGCATTCCCATTTCTTTGCATCCCAGAT	+
Preference number: 6 (lower is better) Translates to: RKEGHLSFVSFN*LQAFPFLCIPD Trigger: ATCTGGGATGCAAAGAAATGGGAATGCCTGAAGTCAATTAAAGCTCACAAAGGACAGGTGACCTTCCTTTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000379568.4 ENST00000644756.2
CDS GCA 72 bp	TTTCTTCTTTGTGCACTGTGTCACCAGGCTCCTTTTTaGCAATTTTGGACTGTTCTTTACTTACAGGAGAAG	+
Preference number: 6 (lower is better) Translates to: FLLCALCHQAPF*QFWTVLYLQEK Trigger: CTTCTCCTGTAAGTAAAGAACAGTCCAAAATTGGCAAAAAGGAGCCTGGTGACACAGTGCACAAAGAAGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000379568.4 ENST00000644756.2
CDS CAA 90 bp	TTTCTACCATTTTCCTCTTCTTGGTTGATATCAGGCCACTTTCTTTaGTTGCTTTCTTACTGTCACCTGTTAAACCGCGTTTCTTTGTGT	+
Preference number: 6 (lower is better) Translates to: FLPFSSSWLISGHFL*LLSYCHLLNRVSLC Trigger: ACACAAAGAAACGCGGTTTAACAGGTGACAGTAAGAAAGCAACAAAAGAAAGTGGCCTGATATCAACCAAGAAGAGGAAAATGGTAGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000379568.4 ENST00000644756.2
CDS TCA 72 bp	TTGATGAAACCATCACTCGATGCTGAAACAATAACATaGTGCTCTGGAATTTCAAAACTGAACATGTCCTTT	+
Preference number: 6 (lower is better) Translates to: LMKPSLDAETIT*CSGISKLNMSF Trigger: AAAGGACATGTTCAGTTTTGAAATTCCAGAGCATCATGTTATTGTTTCAGCATCGAGTGATGGTTTCATCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000379568.4 ENST00000644756.2

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