RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PACRG (Homo sapiens)

Ensembl gene IDs: ENSG00000112530

Ensembl transcript IDs: ENST00000337019.7, ENST00000366888.6, ENST00000366889.6, ENST00000534958.5, ENST00000541974.5, ENST00000542669.1, ENST00000542936.1, ENST00000544266.1

Found 235 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAAGCCAGGCTGCTCTGGGAATTCTGTGCCTCGTCTTGGGAGCAGTaGCTCAGCAAGGTGCAGGTGTGGTGGGAAGGAAGGCTGAGTTCC +
Preference number: 1 (lower is better)
Translates to: EARLLWEFCASSWEQ*LSKVQVWWEGRLSS
Trigger: GGAACTCAGCCTTCCTTCCCACCACACCTGCACCTTGCTGAGCCACTGCTCCCAAGACGAGGCACAGAATTCCCAGAGCAGCCTGGCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000534958.5
3UTR TCA 90 bp GATTTGACGGTAATAAGGCACCAAGGCCTTGCCCACCATCTCAGCTaGCACAACCAGATGCTGGAGGACCTTGAGAGTGACACAGATGAC +
Preference number: 1 (lower is better)
Translates to: DLTVIRHQGLAHHLS*HNQMLEDLESDTDD
Trigger: GTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGCAAGGCCTTGGTGCCTTATTACCGTCAAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
3UTR GCA 90 bp AATTTCTACCTTGACATTGAATTTTTCCAATTTCCAGCATTATTCTaGTATTCATTGGAAGACATGATTCGCTGCCGTCTGTCAGTAGTT +
Preference number: 1 (lower is better)
Translates to: NFYLDIEFFQFPALF*YSLEDMIRCRLSVV
Trigger: AACTACTGACAGACGGCAGCGAATCATGTCTTCCAATGAATAGCAGAATAATGCTGGAAATTGGAAAAATTCAATGTCAAGGTAGAAATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000541974.5
3UTR CAA 90 bp GCCTTGCCCACCATCTCAGCTGACACAACCAGATGCTGGAGGACCTaGAGAGTGACACAGATGACCTGTCGGTTTCGGAGGTTCAAGGCA +
Preference number: 2 (lower is better)
Translates to: ALPTISADTTRCWRT*RVTQMTCRFRRFKA
Trigger: TGCCTTGAACCTCCGAAACCGACAGGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGCAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
3UTR-3UTR CCA 90 bp AGTAGGTTGAAGCCAGGCTGCTCTGGGAATTCTGTGCCTCGTCTTGGGAGCAGTAAGGTGCAGGTGTGGTaGGAAGGAAGGCTGAGTTCC +
Preference number: 2 (lower is better)
Translates to: SRLKPGCSGNSVPRLGSSKVQVW*EGRLSS
Trigger: GGAACTCAGCCTTCCTTCCCACCACACCTGCACCTT...ACTGCTCCCAAGACGAGGCACAGAATTCCCAGAGCAGCCTGGCTTCAACCTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000534958.5
3UTR-3UTR TCA 90 bp GCAGTCAGCATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCAGCAACAGAGACAGATaGTCCCAACACCAACGGGAG +
Preference number: 2 (lower is better)
Translates to: AVSINSSLTTSDITPRAGSNRDR*SQHQRE
Trigger: CTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCT...GCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGACTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
3UTR-3UTR TCA 90 bp GTCAGCATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACAAGCAACAGAGACAGATaGTCCCAACACCAACGGGAG +
Preference number: 2 (lower is better)
Translates to: VSINSSLTTSDITPRAGTSNRDR*SQHQRE
Trigger: CTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCT...TGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
3UTR-3UTR GCA 90 bp GGATCAAGTCCCCAATGTTCTCCCTCTTCTGCTGGCTGTAGTCAATGCCGTCTCGCTGACACAACCAGATaGTGGAGGACCTTGAGAGTG +
Preference number: 2 (lower is better)
Translates to: GSSPQCSPSSAGCSQCRLADTTR*WRTLRV
Trigger: CACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGC...GAGACGGCATTGACTACAGCCAGCAGAAGAGGGAGAACATTGGGGACTTGATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
3UTR-3UTR TCA 90 bp AAAGATGTTCAGGACAGGGAGGATTTGACGGTAATAAGGCACCAAGGCCTTGCCAGCAACAGAGACAGATaGTCCCAACACCAACGGGAG +
Preference number: 2 (lower is better)
Translates to: KDVQDREDLTVIRHQGLASNRDR*SQHQRE
Trigger: CTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCT...GGCAAGGCCTTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTGAACATCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
3UTR-3UTR GCA 90 bp AAAGAACACCAAATGAGTAGGTTGAAGCCAGGCTGCTCTGGGAATTCTGTGCCTAGTGGCTCAGCAAGGTaGAGGTGTGGTGGGAAGGAA +
Preference number: 2 (lower is better)
Translates to: KEHQMSRLKPGCSGNSVPSGSAR*RCGGKE
Trigger: TTCCTTCCCACCACACCTGCACCTTGCTGAGCCACT...AGGCACAGAATTCCCAGAGCAGCCTGGCTTCAACCTACTCATTTGGTGTTCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000534958.5
3UTR-3UTR CCA 90 bp GCTGACACAACCAGATGCTGGAGGACCTTGAGAGTGACACAGATGACCTGTCGGGGGCTAACAGTCCAATaGCCCATAAGCCACTATTTT +
Preference number: 2 (lower is better)
Translates to: ADTTRCWRTLRVTQMTCRGLTVQ*PISHYF
Trigger: AAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCC...CCGACAGGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000541974.5
3UTR-3UTR TCA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGGGAAGTCACAAGGAATaGGATGCTAAAAGCAACAGA +
Preference number: 2 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLGSHKE*DAKSNR
Trigger: TCTGTTGCTTTTAGCATCTCATTCCTTGTGACTTCC...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
3UTR-3UTR TCA 90 bp TCAGCTGACACAACCAGATGCTGGAGGACCTTGAGAGTGACACAGATGACCTGTATTCATTGGAAGACATaGTTCGCTGCCGTCTGTCAG +
Preference number: 2 (lower is better)
Translates to: SADTTRCWRTLRVTQMTCIHWKT*FAAVCQ
Trigger: CTGACAGACGGCAGCGAATCATGTCTTCCAATGAAT...ACAGGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGCTGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
3UTR-3UTR TCA 90 bp ATAGGGCTAACAGTCCAATGGCCCATAAGCCACTATTTTAGCAGCTGTAGAAAATTCCCTTACAACCTCTaGCATCACCCCCAGGGCAGG +
Preference number: 2 (lower is better)
Translates to: IGLTVQWPISHYFSSCRKFPYNL*HHPQGR
Trigger: CCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAA...TTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCCTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
3UTR-3UTR GCA 90 bp GACATCACCCCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGTTTAACTCGGACTCCTaGTTCTGTCGGAGCTGTATA +
Preference number: 2 (lower is better)
Translates to: DITPRAGTHRTAIAELHMFNSDS*FCRSCI
Trigger: TATACAGCTCCGACAGAAGCAGGAGTCCGAGTTAAA...CATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGTGATGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
3UTR-3UTR GCA 90 bp ACCCCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGAAAATTTTTAACTCGGACTCCTaGTTCTGTCGGAGCTGTATA +
Preference number: 2 (lower is better)
Translates to: TPRAGTHRTAIAELHMKIFNSDS*FCRSCI
Trigger: TATACAGCTCCGACAGAAGCAGGAGTCCGAGTTAAA...AATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
3UTR-3UTR CCA 90 bp ACCCCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGAAAATTGGGCTAACAGTCCAATaGCCCATAAGCCACTATTTT +
Preference number: 2 (lower is better)
Translates to: TPRAGTHRTAIAELHMKIGLTVQ*PISHYF
Trigger: AAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCC...AATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
3UTR-3UTR TCA 90 bp TCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCACAGTACACAGCAACAGAGACAGATaGTCCCAACACCAACGGGAG +
Preference number: 2 (lower is better)
Translates to: SELYKEAILLLEQISTVHSNRDR*SQHQRE
Trigger: CTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCT...GTGTACTGTGCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
3UTR-3UTR TCA 90 bp ACAGTTTTATTGAATGTCAAAGCACATTATTCCGCACAGCTGCTAGAGAGGCACCATGCTTCTCTTCCATaGCAAACACCTAGTAAGCAG +
Preference number: 2 (lower is better)
Translates to: TVLLNVKAHYSAQLLERHHASLP*QTPSKQ
Trigger: CTGCTTACTAGGTGTTTGTCATGGAAGAGAAGCATG...GTGCCTCTCTAGCAGCTGTGCGGAATAATGTGCTTTGACATTCAATAAAACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
3UTR-3UTR CCA 90 bp TTTATTGTCTATACAACTGAAGGTTTAACTCGGACTCCTGCTTCTGTCGGAGCTGGGCTAACAGTCCAATaGCCCATAAGCCACTATTTT +
Preference number: 2 (lower is better)
Translates to: FIVYTTEGLTRTPASVGAGLTVQ*PISHYF
Trigger: AAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCC...AGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
3UTR-3UTR TCA 90 bp ACAGTTTTATTGAATGTCAAAGCACATTATTCCGCACAGCTGCTAGAGAGGCACTATTGTCTATACAACTaGAGGTTTAACTCGGACTCC +
Preference number: 2 (lower is better)
Translates to: TVLLNVKAHYSAQLLERHYCLYN*RFNSDS
Trigger: GGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATA...GTGCCTCTCTAGCAGCTGTGCGGAATAATGTGCTTTGACATTCAATAAAACTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
3UTR-3UTR CCA 90 bp CTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCGGGCTAACAGTCCAATaGCCCATAAGCCACTATTTT +
Preference number: 2 (lower is better)
Translates to: LLLSELYKEAILLLEQISGLTVQ*PISHYF
Trigger: AAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCC...GCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
3UTR-3UTR GCA 90 bp ATTCTTAAAGATGTTCAGGACAGGGAGGATTTGACGGTAATAAGGCACCAAGGCTTTCCAGCATTATTCTaGTATTCATTGGAAGACATG +
Preference number: 2 (lower is better)
Translates to: ILKDVQDREDLTVIRHQGFPALF*YSLEDM
Trigger: CATGTCTTCCAATGAATAGCAGAATAATGCTGGAAA...GCCTTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTGAACATCTTTAAGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
3UTR TCA 72 bp GGCTCAGCAAGGTGCAGGTGTGGTGGGAAGGAAGGCTaGGTTCCCCCAGCTGCCGCCTCCTTTCTGTCTCGC +
Preference number: 3 (lower is better)
Translates to: GSARCRCGGKEG*VPPAAASFLSR
Trigger: GCGAGACAGAAAGGAGGCGGCAGCTGGGGGAACTCAGCCTTCCTTCCCACCACACCTGCACCTTGCTGAGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000534958.5
3UTR CCA 72 bp GCCTTGCCCACCATCTCAGCTGACACAACCAGATGCTaGAGGACCTTGAGAGTGACACAGATGACCTGTCGG +
Preference number: 3 (lower is better)
Translates to: ALPTISADTTRC*RTLRVTQMTCR
Trigger: CCGACAGGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGCAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
3UTR-3UTR CAA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGAGGACAGGTAGGATCTaGTTCCCACCGTGTTCCAGC +
Preference number: 3 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLRTGRI*FPPCSS
Trigger: GCTGGAACACGGTGGGAACAAGATCCTACCTGTCCT...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
3UTR GCA 72 bp AAGGCCTTGCCCACCATCTCAGCTGACACAACCAGATaGTGGAGGACCTTGAGAGTGACACAGATGACCTGT +
Preference number: 3 (lower is better)
Translates to: KALPTISADTTR*WRTLRVTQMTC
Trigger: ACAGGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGCAAGGCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
3UTR GCA 72 bp CAGGGAGGATTTGACGGTAATAAGGCACCAAGGCCTTaGCCACCATCTCAGCTGACACAACCAGATGCTGGA +
Preference number: 3 (lower is better)
Translates to: QGGFDGNKAPRP*PPSQLTQPDAG
Trigger: TCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGCAAGGCCTTGGTGCCTTATTACCGTCAAATCCTCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
3UTR TCA 72 bp GTAAGCAGTCAGCATAAACTCTTCCCTTACAACCTCTaGCATCACCCCCAGGGCAGGCACACACAGAACAGC +
Preference number: 3 (lower is better)
Translates to: VSSQHKLFPYNL*HHPQGRHTQNS
Trigger: GCTGTTCTGTGTGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGACTGCTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
3UTR-3UTR CAA 90 bp GGATCAAGTCCCCAATGTTCTCCCTCTTCTGCTGGCTGTAGTCAATGCCGTCTCCAGGACAGGGAGGATTaGACGGTAATAAGGCACCAA +
Preference number: 3 (lower is better)
Translates to: GSSPQCSPSSAGCSQCRLQDRED*TVIRHQ
Trigger: TTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTG...GAGACGGCATTGACTACAGCCAGCAGAAGAGGGAGAACATTGGGGACTTGATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
3UTR-3UTR CAA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGATGTATTGGAAAGCCTaGCTCTCAATAGGGCTAACA +
Preference number: 3 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLMYWKA*LSIGLT
Trigger: TGTTAGCCCTATTGAGAGCAAGGCTTTCCAATACAT...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
3UTR GCA 72 bp TTTAAAGAACACCAAATGAGTAGGTTGAAGCCAGGCTaGTCTGGGAATTCTGTGCCTCGTCTTGGGAGCAGT +
Preference number: 3 (lower is better)
Translates to: FKEHQMSRLKPG*SGNSVPRLGSS
Trigger: ACTGCTCCCAAGACGAGGCACAGAATTCCCAGAGCAGCCTGGCTTCAACCTACTCATTTGGTGTTCTTTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000534958.5
3UTR-3UTR CAA 90 bp CTGCTGGCTGTAGTCAATGCCGTCTCCGGAGTTCACATTCATATTCTTAAAGATAGATGCTGGAGGACCTaGAGAGTGACACAGATGACC +
Preference number: 3 (lower is better)
Translates to: LLAVVNAVSGVHIHILKDRCWRT*RVTQMT
Trigger: GGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCT...ATCTTTAAGAATATGAATGTGAACTCCGGAGACGGCATTGACTACAGCCAGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
3UTR-3UTR CAA 90 bp TCAGCTGACACAACCAGATGCTGGAGGACCTTGAGAGTGACACAGATGACCTGTTTATTCTGCTATTCATaGGAAGACATGATTCGCTGC +
Preference number: 3 (lower is better)
Translates to: SADTTRCWRTLRVTQMTCLFCYS*EDMIRC
Trigger: GCAGCGAATCATGTCTTCCAATGAATAGCAGAATAA...ACAGGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
3UTR-3UTR CAA 90 bp GACATCACCCCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGGACACTATTTATGTATaGGAAAGCCTTGCTCTCAAT +
Preference number: 3 (lower is better)
Translates to: DITPRAGTHRTAIAELHMDTIYV*ESLALN
Trigger: ATTGAGAGCAAGGCTTTCCAATACATAAATAGTGTC...CATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGTGATGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
3UTR CCA 72 bp TGGAAAGCCTTGCTCTCAATAGGGCTAACAGTCCAATaGCCCATAAGCCACTATTTTAGCAGCTGTAGAAAA +
Preference number: 3 (lower is better)
Translates to: WKALLSIGLTVQ*PISHYFSSCRK
Trigger: TTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCCTATTGAGAGCAAGGCTTTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
3UTR-3UTR CAA 90 bp GAACCCATGCTTCTCTTCCATGACAAACACCTAGTAAGCAGTCAGCATAAACTCATGTATTGGAAAGCCTaGCTCTCAATAGGGCTAACA +
Preference number: 3 (lower is better)
Translates to: EPMLLFHDKHLVSSQHKLMYWKA*LSIGLT
Trigger: TGTTAGCCCTATTGAGAGCAAGGCTTTCCAATACAT...GAGTTTATGCTGACTGCTTACTAGGTGTTTGTCATGGAAGAGAAGCATGGGTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
3UTR-3UTR CAA 90 bp ATAGGGCTAACAGTCCAATGGCCCATAAGCCACTATTTTAGCAGCTGTAGAAAAATGTATTGGAAAGCCTaGCTCTCAATAGGGCTAACA +
Preference number: 3 (lower is better)
Translates to: IGLTVQWPISHYFSSCRKMYWKA*LSIGLT
Trigger: TGTTAGCCCTATTGAGAGCAAGGCTTTCCAATACAT...TTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCCTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
3UTR-3UTR CAA 90 bp CTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCGACACTATTTATGTATaGGAAAGCCTTGCTCTCAAT +
Preference number: 3 (lower is better)
Translates to: LLLSELYKEAILLLEQISDTIYV*ESLALN
Trigger: ATTGAGAGCAAGGCTTTCCAATACATAAATAGTGTC...GCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR TCA 90 bp GAAGGAAGGCTGAGTTCCCCCAGCTGCCGCCTCCTTTCTGTCTCGCTTGTTGGCGCCCACCATCTCAGCTaGCACAACCAGATGCTGGAG +
Preference number: 4 (lower is better)
Translates to: EGRLSSPSCRLLSVSLVGAHHLS*HNQMLE
Trigger: CTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGC...GCCAACAAGCGAGACAGAAAGGAGGCGGCAGCTGGGGGAACTCAGCCTTCCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR GCA 90 bp CAGGTGTGGTGGGAAGGAAGGCTGAGTTCCCCCAGCTGCCGCCTCCTTTCTGTCAGTGGCTCAGCAAGGTaGAGGTGTGGTGGGAAGGAA +
Preference number: 4 (lower is better)
Translates to: QVWWEGRLSSPSCRLLSVSGSAR*RCGGKE
Trigger: TTCCTTCCCACCACACCTGCACCTTGCTGAGCCACT...GACAGAAAGGAGGCGGCAGCTGGGGGAACTCAGCCTTCCTTCCCACCACACCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR CCA 90 bp GTGTGGTGGGAAGGAAGGCTGAGTTCCCCCAGCTGCCGCCTCCTTTCTGTCTCGTTCTGTGCCTCGTCTTaGGAGCAGTGGCTCAGCAAG +
Preference number: 4 (lower is better)
Translates to: VWWEGRLSSPSCRLLSVSFCASS*EQWLSK
Trigger: CTTGCTGAGCCACTGCTCCCAAGACGAGGCACAGAA...CGAGACAGAAAGGAGGCGGCAGCTGGGGGAACTCAGCCTTCCTTCCCACCACAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR TCA 90 bp CATTTTCTCCTCCGTAGCGCTCGAAGGCCTCCAGTGTCTCCTGGATCAAGTCCCGCCCACCATCTCAGCTaGCACAACCAGATGCTGGAG +
Preference number: 4 (lower is better)
Translates to: HFLLRSARRPPVSPGSSPAHHLS*HNQMLE
Trigger: CTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGC...GGGACTTGATCCAGGAGACACTGGAGGCCTTCGAGCGCTACGGAGGAGAAAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR TCA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGTTGGCAGCTCCTAGGTaGAGGGAGCTGGACCCTAGG +
Preference number: 4 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLLAAPR*RELDPR
Trigger: CCTAGGGTCCAGCTCCCTTCACCTAGGAGCTGCCAA...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000366888.6
CDS-3UTR GCA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGCGGGAGCGGCTGTTGTaGCAGCAGCTTGGTCCTCTT +
Preference number: 4 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLRERLL*QQLGPL
Trigger: AAGAGGACCAAGCTGCTGGCACAACAGCCGCTCCCG...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR GCA 90 bp TGGTGGGAAGGAAGGCTGAGTTCCCCCAGCTGCCGCCTCCTTTCTGTCTCGCTTAGGTTGAAGCCAGGCTaGTCTGGGAATTCTGTGCCT +
Preference number: 4 (lower is better)
Translates to: WWEGRLSSPSCRLLSVSLRLKPG*SGNSVP
Trigger: AGGCACAGAATTCCCAGAGCAGCCTGGCTTCAACCT...AAGCGAGACAGAAAGGAGGCGGCAGCTGGGGGAACTCAGCCTTCCTTCCCACCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR CCA 90 bp GTGTGGTGGGAAGGAAGGCTGAGTTCCCCCAGCTGCCGCCTCCTTTCTGTCTCGGACACAACCAGATGCTaGAGGACCTTGAGAGTGACA +
Preference number: 4 (lower is better)
Translates to: VWWEGRLSSPSCRLLSVSDTTRC*RTLRVT
Trigger: TGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTC...CGAGACAGAAAGGAGGCGGCAGCTGGGGGAACTCAGCCTTCCTTCCCACCACAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR GCA 90 bp GTCAGCATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACAACTGGCCGGTTGTGGTaGGGTTCAGGACCCATCGAG +
Preference number: 4 (lower is better)
Translates to: VSINSSLTTSDITPRAGTTGRLW*GSGPIE
Trigger: CTCGATGGGTCCTGAACCGCACCACAACCGGCCAGT...TGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR GCA 90 bp GTTGAAGCCAGGCTGCTCTGGGAATTCTGTGCCTCGTCTTGGGAGCAGTGGCTCGCTGACACAACCAGATaGTGGAGGACCTTGAGAGTG +
Preference number: 4 (lower is better)
Translates to: VEARLLWEFCASSWEQWLADTTR*WRTLRV
Trigger: CACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGC...GAGCCACTGCTCCCAAGACGAGGCACAGAATTCCCAGAGCAGCCTGGCTTCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR CCA 90 bp CTAAAAGCAACAGAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCACTAGGTGAAGGGAGCTaGACCCTAGGGGCGGGGCGG +
Preference number: 4 (lower is better)
Translates to: LKATETDDPNTNGRFQVPLGEGS*TLGAGR
Trigger: CCGCCCCGCCCCTAGGGTCCAGCTCCCTTCACCTAG...TGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000366888.6
CDS-3UTR GCA 90 bp AGTAGGTTGAAGCCAGGCTGCTCTGGGAATTCTGTGCCTCGTCTTGGGAGCAGTGCTCTGGGAATTCTGTaGCTCGTCTTGGGAGCAGTG +
Preference number: 4 (lower is better)
Translates to: SRLKPGCSGNSVPRLGSSALGIL*LVLGAV
Trigger: CACTGCTCCCAAGACGAGGCACAGAATTCCCAGAGC...ACTGCTCCCAAGACGAGGCACAGAATTCCCAGAGCAGCCTGGCTTCAACCTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR CCA 90 bp GCAGTCAGCATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCGAGACCCACTCTCTGTaGGGCTCTTTCAGGAAACCG +
Preference number: 4 (lower is better)
Translates to: AVSINSSLTTSDITPRAGETHSL*GSFRKP
Trigger: CGGTTTCCTGAAAGAGCCCCACAGAGAGTGGGTCTC...GCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGACTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp ATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACACACAGACTCACTGGCCGGTTGTaGTGCGGTTCAGGACCCATC +
Preference number: 4 (lower is better)
Translates to: INSSLTTSDITPRAGTHRLTGRL*CGSGPI
Trigger: GATGGGTCCTGAACCGCACCACAACCGGCCAGTGAG...TCTGTGTGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR TCA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGAGCAACAGAGACAGATaGTCCCAACACCAACGGGAG +
Preference number: 4 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLSNRDR*SQHQRE
Trigger: CTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCT...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR TCA 90 bp GAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTAGCAACAGAGACAGATaGTCCCAACACCAACGGGAG +
Preference number: 4 (lower is better)
Translates to: ETDDPNTNGRFQVPAAATSNRDR*SQHQRE
Trigger: CTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCT...AGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR GCA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGGCTGGCTGTAGTCAATaGCGTCTCCGGAGTTCACAT +
Preference number: 4 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLAGCSQ*RLRSSH
Trigger: ATGTGAACTCCGGAGACGGCATTGACTACAGCCAGC...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CCA 90 bp GCAGTCAGCATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCGTTGTGCCAGCAGCTTaGTCCTCTTCGGCATCTTGT +
Preference number: 4 (lower is better)
Translates to: AVSINSSLTTSDITPRAGVVPAA*SSSASC
Trigger: ACAAGATGCCGAAGAGGACCAAGCTGCTGGCACAAC...GCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGACTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGGTTGTGCCAGCAGCTTaGTCCTCTTCGGCATCTTGT +
Preference number: 4 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLVVPAA*SSSASC
Trigger: ACAAGATGCCGAAGAGGACCAAGCTGCTGGCACAAC...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CCA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGGCCTCCAGTGTCTCCTaGATCAAGTCCCCAATGTTC +
Preference number: 4 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLASSVS*IKSPMF
Trigger: GAACATTGGGGACTTGATCCAGGAGACACTGGAGGC...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CCA 90 bp CAAATGAGTAGGTTGAAGCCAGGCTGCTCTGGGAATTCTGTGCCTCGTCTTGGGAAGGTGCAGGTGTGGTaGGAAGGAAGGCTGAGTTCC +
Preference number: 4 (lower is better)
Translates to: QMSRLKPGCSGNSVPRLGKVQVW*EGRLSS
Trigger: GGAACTCAGCCTTCCTTCCCACCACACCTGCACCTT...CCCAAGACGAGGCACAGAATTCCCAGAGCAGCCTGGCTTCAACCTACTCATTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR GCA 90 bp CTAAAAGCAACAGAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCACGGGAGCGGCTGTTGTaGCAGCAGCTTGGTCCTCTT +
Preference number: 4 (lower is better)
Translates to: LKATETDDPNTNGRFQVPRERLL*QQLGPL
Trigger: AAGAGGACCAAGCTGCTGGCACAACAGCCGCTCCCG...TGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR GCA 90 bp GTCAGCATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACATGGTCTTTCTTTAAATaGCCCTGCAGCTGGAGGGCC +
Preference number: 4 (lower is better)
Translates to: VSINSSLTTSDITPRAGTWSFFK*PCSWRA
Trigger: GGCCCTCCAGCTGCAGGGGCATTTAAAGAAAGACCA...TGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR GCA 90 bp GTCAGCATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACAGCTGGCTGTAGTCAATaGCGTCTCCGGAGTTCACTA +
Preference number: 4 (lower is better)
Translates to: VSINSSLTTSDITPRAGTAGCSQ*RLRSSL
Trigger: TAGTGAACTCCGGAGACGGCATTGACTACAGCCAGC...TGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000337019.7
CDS-3UTR CCA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGGACACAACCAGATGCTaGAGGACCTTGAGAGTGACA +
Preference number: 4 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLDTTRC*RTLRVT
Trigger: TGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTC...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR TCA 90 bp CTAAAAGCAACAGAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCCCACCATCTCAGCTaGCACAACCAGATGCTGGAG +
Preference number: 4 (lower is better)
Translates to: LKATETDDPNTNGRFQVPAHHLS*HNQMLE
Trigger: CTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGC...TGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR TCA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGATTCATTGGAAGACATaGTTCGCTGCCGTCTGTCAG +
Preference number: 4 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLIHWKT*FAAVCQ
Trigger: CTGACAGACGGCAGCGAATCATGTCTTCCAATGAAT...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR GCA 90 bp ACCCCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGAAAATTCGGGAGCGGCTGTTGTaGCAGCAGCTTGGTCCTCTT +
Preference number: 4 (lower is better)
Translates to: TPRAGTHRTAIAELHMKIRERLL*QQLGPL
Trigger: AAGAGGACCAAGCTGCTGGCACAACAGCCGCTCCCG...AATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR GCA 90 bp ATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACACACAGATTCTTTAAATGCCCCTaGAGCTGGAGGGCCTCTCAC +
Preference number: 4 (lower is better)
Translates to: INSSLTTSDITPRAGTHRFFKCP*SWRASH
Trigger: GTGAGAGGCCCTCCAGCTGCAGGGGCATTTAAAGAA...TCTGTGTGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR GCA 90 bp CAATGTTCTCCCTCTTCTGCTGGCTGTAGTCAATGCCGTCTCCGGAGTTCACATTGGTCTTTCTTTAAATaGCCCTGCAGCTGGAGGGCC +
Preference number: 4 (lower is better)
Translates to: QCSPSSAGCSQCRLRSSHWSFFK*PCSWRA
Trigger: GGCCCTCCAGCTGCAGGGGCATTTAAAGAAAGACCA...ATGTGAACTCCGGAGACGGCATTGACTACAGCCAGCAGAAGAGGGAGAACATTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR GCA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGGCACTGCTGAACCCATaGTTCTCTTCCATGACAAAC +
Preference number: 4 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLALLNP*FSSMTN
Trigger: GTTTGTCATGGAAGAGAAGCATGGGTTCAGCAGTGC...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp ACCCCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGAAAATTCCTGGTGAGGGTGGCTaGCTCCACAGAAACTCCTCC +
Preference number: 4 (lower is better)
Translates to: TPRAGTHRTAIAELHMKIPGEGG*LHRNSS
Trigger: GGAGGAGTTTCTGTGGAGCCAGCCACCCTCACCAGG...AATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp ATTGAATGTCAAAGCACATTATTCCGCACAGCTGCTAGAGAGGCACTGCTGAACAGCAGGAGGTCTCACTaGCCGGTTGTGGTGCGGTTC +
Preference number: 4 (lower is better)
Translates to: IECQSTLFRTAAREALLNSRRSH*PVVVRF
Trigger: GAACCGCACCACAACCGGCCAGTGAGACCTCCTGCT...GTTCAGCAGTGCCTCTCTAGCAGCTGTGCGGAATAATGTGCTTTGACATTCAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp ACCCCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGAAAATTAGCAGGAGGTCTCACTaGCCGGTTGTGGTGCGGTTC +
Preference number: 4 (lower is better)
Translates to: TPRAGTHRTAIAELHMKISRRSH*PVVVRF
Trigger: GAACCGCACCACAACCGGCCAGTGAGACCTCCTGCT...AATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp GAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTTGCTGTGGGCTTGGTTaGTCTTTCTTTAAATGCCCC +
Preference number: 4 (lower is better)
Translates to: ETDDPNTNGRFQVPAAATCCGLG*SFFKCP
Trigger: GGGGCATTTAAAGAAAGACCAACCAAGCCCACAGCA...AGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CCA 90 bp AGGCATTTTCTCCTCCGTAGCGCTCGAAGGCCTCCAGTGTCTCCTGGATCAAGTTGCTGTGGGCTTGGTTaGTCTTTCTTTAAATGCCCC +
Preference number: 4 (lower is better)
Translates to: RHFLLRSARRPPVSPGSSCCGLG*SFFKCP
Trigger: GGGGCATTTAAAGAAAGACCAACCAAGCCCACAGCA...ACTTGATCCAGGAGACACTGGAGGCCTTCGAGCGCTACGGAGGAGAAAATGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR CCA 90 bp CATTTTCTCCTCCGTAGCGCTCGAAGGCCTCCAGTGTCTCCTGGATCAAGTCCCGCAAGACTCGTAGGTTaGGACCACGTACTTAATGTT +
Preference number: 4 (lower is better)
Translates to: HFLLRSARRPPVSPGSSPARLVG*DHVLNV
Trigger: AACATTAAGTACGTGGTCCCAACCTACGAGTCTTGC...GGGACTTGATCCAGGAGACACTGGAGGCCTTCGAGCGCTACGGAGGAGAAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR TCA 90 bp ATAGGGCTAACAGTCCAATGGCCCATAAGCCACTATTTTAGCAGCTGTAGAAAAATGGAAGGCACCTGGTaGGGGTGGCTGGCTCCACAG +
Preference number: 4 (lower is better)
Translates to: IGLTVQWPISHYFSSCRKMEGTW*GWLAPQ
Trigger: CTGTGGAGCCAGCCACCCTCACCAGGTGCCTTCCAT...TTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCCTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR GCA 90 bp CATTTTCTCCTCCGTAGCGCTCGAAGGCCTCCAGTGTCTCCTGGATCAAGTCCCTTTCCTTTCGAATCATaGTCAAGGGCAATTGGGAAG +
Preference number: 4 (lower is better)
Translates to: HFLLRSARRPPVSPGSSPFPFES*SRAIGK
Trigger: CTTCCCAATTGCCCTTGAGCATGATTCGAAAGGAAA...GGGACTTGATCCAGGAGACACTGGAGGCCTTCGAGCGCTACGGAGGAGAAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR GCA 90 bp AGGACCTTGAGAGTGACACAGATGACCTGTCGGTTTCGGAGGTTCAAGGCATTTGCTGACACAACCAGATaGTGGAGGACCTTGAGAGTG +
Preference number: 4 (lower is better)
Translates to: RTLRVTQMTCRFRRFKAFADTTR*WRTLRV
Trigger: CACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGC...AAATGCCTTGAACCTCCGAAACCGACAGGTCATCTGTGTCACTCTCAAGGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR GCA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGTTTAACTCGGACTCCTaGTTCTGTCGGAGCTGTATA +
Preference number: 4 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLFNSDS*FCRSCI
Trigger: TATACAGCTCCGACAGAAGCAGGAGTCCGAGTTAAA...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR GCA 90 bp GAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGAAGACATGATTCGCTaGCGTCTGTCAGTAGTTTTC +
Preference number: 4 (lower is better)
Translates to: ETDDPNTNGRFQVPAAATEDMIR*RLSVVF
Trigger: GAAAACTACTGACAGACGGCAGCGAATCATGTCTTC...AGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR CCA 90 bp CAAATGAGTAGGTTGAAGCCAGGCTGCTCTGGGAATTCTGTGCCTCGTCTTGGGTGTTCCAGCATGTCGTaGATTCCTTGCCGAGCAAAA +
Preference number: 4 (lower is better)
Translates to: QMSRLKPGCSGNSVPRLGCSSMS*IPCRAK
Trigger: TTTTGCTCGGCAAGGAATCCACGACATGCTGGAACA...CCCAAGACGAGGCACAGAATTCCCAGAGCAGCCTGGCTTCAACCTACTCATTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR CCA 90 bp GGATCAAGTCCCCAATGTTCTCCCTCTTCTGCTGGCTGTAGTCAATGCCGTCTCTGTTCCAGCATGTCGTaGATTCCTTGCCGAGCAAAA +
Preference number: 4 (lower is better)
Translates to: GSSPQCSPSSAGCSQCRLCSSMS*IPCRAK
Trigger: TTTTGCTCGGCAAGGAATCCACGACATGCTGGAACA...GAGACGGCATTGACTACAGCCAGCAGAAGAGGGAGAACATTGGGGACTTGATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR CCA 90 bp GCAGTCAGCATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCGCAAGACTCGTAGGTTaGGACCACGTACTTAATGTT +
Preference number: 4 (lower is better)
Translates to: AVSINSSLTTSDITPRAGARLVG*DHVLNV
Trigger: AACATTAAGTACGTGGTCCCAACCTACGAGTCTTGC...GCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGACTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp GAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGGGCTAACAGTCCAATaGCCCATAAGCCACTATTTT +
Preference number: 4 (lower is better)
Translates to: ETDDPNTNGRFQVPAAATGLTVQ*PISHYF
Trigger: AAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCC...AGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR GCA 90 bp CCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGAAAATTATAACTGGCCGGTTGTGGTaGGGTTCAGGACCCATCGAG +
Preference number: 4 (lower is better)
Translates to: PRAGTHRTAIAELHMKIITGRLW*GSGPIE
Trigger: CTCGATGGGTCCTGAACCGCACCACAACCGGCCAGT...TATAATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR GCA 90 bp GAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTCAGGGTCTCTTTTTCTaGCACCATCTTCCTAGAAAA +
Preference number: 4 (lower is better)
Translates to: ETDDPNTNGRFQVPAAATQGLFF*HHLPRK
Trigger: TTTTCTAGGAAGATGGTGGCAGAAAAAGAGACCCTG...AGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR GCA 90 bp CTAAAAGCAACAGAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCATGGTCTTTCTTTAAATaGCCCTGCAGCTGGAGGGCC +
Preference number: 4 (lower is better)
Translates to: LKATETDDPNTNGRFQVPWSFFK*PCSWRA
Trigger: GGCCCTCCAGCTGCAGGGGCATTTAAAGAAAGACCA...TGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR GCA 90 bp GAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTTTTCCTTTCGAATCATaGTCAAGGGCAATTGGGAAG +
Preference number: 4 (lower is better)
Translates to: ETDDPNTNGRFQVPAAATFPFES*SRAIGK
Trigger: CTTCCCAATTGCCCTTGAGCATGATTCGAAAGGAAA...AGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CCA 90 bp CCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGAAAATTATACCTGGTGAGGGTGGCTaGCTCCACAGAAACTCCTCC +
Preference number: 4 (lower is better)
Translates to: PRAGTHRTAIAELHMKIIPGEGG*LHRNSS
Trigger: GGAGGAGTTTCTGTGGAGCCAGCCACCCTCACCAGG...TATAATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp GACACAACCAGATGCTGGAGGACCTTGAGAGTGACACAGATGACCTGTCGGTTTATGCTCAAGGGCAATTaGGAAGTCACCTCGCTCATA +
Preference number: 4 (lower is better)
Translates to: DTTRCWRTLRVTQMTCRFMLKGN*EVTSLI
Trigger: TATGAGCGAGGTGACTTCCCAATTGCCCTTGAGCAT...AAACCGACAGGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR CCA 90 bp CTAAAAGCAACAGAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCCTCCAGTGTCTCCTaGATCAAGTCCCCAATGTTC +
Preference number: 4 (lower is better)
Translates to: LKATETDDPNTNGRFQVPASSVS*IKSPMF
Trigger: GAACATTGGGGACTTGATCCAGGAGACACTGGAGGC...TGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CCA 90 bp AAAGAACACCAAATGAGTAGGTTGAAGCCAGGCTGCTCTGGGAATTCTGTGCCTTTCTGTCTCGCTTGTTaGCAGGAGAACCTACGGAGG +
Preference number: 4 (lower is better)
Translates to: KEHQMSRLKPGCSGNSVPFCLAC*QENLRR
Trigger: CCTCCGTAGGTTCTCCTGCCAACAAGCGAGACAGAA...AGGCACAGAATTCCCAGAGCAGCCTGGCTTCAACCTACTCATTTGGTGTTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR TCA 90 bp CTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCATGGAAGGCACCTGGTaGGGGTGGCTGGCTCCACAG +
Preference number: 4 (lower is better)
Translates to: LLLSELYKEAILLLEQISMEGTW*GWLAPQ
Trigger: CTGTGGAGCCAGCCACCCTCACCAGGTGCCTTCCAT...GCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR TCA 90 bp CCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGAAAATTATATGGGCTTTACGGATGTaGGCAGGAGGTCTCACTGGC +
Preference number: 4 (lower is better)
Translates to: PRAGTHRTAIAELHMKIIWALRM*AGGLTG
Trigger: GCCAGTGAGACCTCCTGCTCACATCCGTAAAGCCCA...TATAATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR TCA 90 bp TTTATTGTCTATACAACTGAAGGTTTAACTCGGACTCCTGCTTCTGTCGGAGCTGCCCACCATCTCAGCTaGCACAACCAGATGCTGGAG +
Preference number: 4 (lower is better)
Translates to: FIVYTTEGLTRTPASVGAAHHLS*HNQMLE
Trigger: CTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGC...AGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR TCA 90 bp ACAGTTTTATTGAATGTCAAAGCACATTATTCCGCACAGCTGCTAGAGAGGCACTTCCCTTACAACCTCTaGCATCACCCCCAGGGCAGG +
Preference number: 4 (lower is better)
Translates to: TVLLNVKAHYSAQLLERHFPYNL*HHPQGR
Trigger: CCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAA...GTGCCTCTCTAGCAGCTGTGCGGAATAATGTGCTTTGACATTCAATAAAACTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR TCA 90 bp CTAAAAGCAACAGAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCATGGGCTTTACGGATGTaGGCAGGAGGTCTGGAAAAA +
Preference number: 4 (lower is better)
Translates to: LKATETDDPNTNGRFQVPWALRM*AGGLEK
Trigger: TTTTTCCAGACCTCCTGCTCACATCCGTAAAGCCCA...TGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366888.6
CDS-3UTR GCA 90 bp GTCAGCATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACACAGGGTCTCTTTTTCTaGCACCATCTTCCTAGAAAA +
Preference number: 4 (lower is better)
Translates to: VSINSSLTTSDITPRAGTQGLFF*HHLPRK
Trigger: TTTTCTAGGAAGATGGTGGCAGAAAAAGAGACCCTG...TGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR GCA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGATAGAATTTTCGAAATaGTGTGGGCTTGGTTGGTCT +
Preference number: 4 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLIEFSK*CGLGWS
Trigger: AGACCAACCAAGCCCACAGCATTTCGAAAATTCTAT...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR GCA 90 bp ACCCCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGAAAATTGCTGACACAACCAGATaGTGGAGGACCTTGAGAGTG +
Preference number: 4 (lower is better)
Translates to: TPRAGTHRTAIAELHMKIADTTR*WRTLRV
Trigger: CACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGC...AATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGATTTTCGAAATGCTGTaGGCTTGGTTGGTCTTTCTT +
Preference number: 4 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLIFEML*AWLVFL
Trigger: AAGAAAGACCAACCAAGCCCACAGCATTTCGAAAAT...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CCA 90 bp CAATGTTCTCCCTCTTCTGCTGGCTGTAGTCAATGCCGTCTCCGGAGTTCACATGGGCTAACAGTCCAATaGCCCATAAGCCACTATTTT +
Preference number: 4 (lower is better)
Translates to: QCSPSSAGCSQCRLRSSHGLTVQ*PISHYF
Trigger: AAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCC...ATGTGAACTCCGGAGACGGCATTGACTACAGCCAGCAGAAGAGGGAGAACATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR TCA 90 bp CTCCTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATATCAGAAACCAGAGAGTaGGGCTGGTGCACCGGGAGC +
Preference number: 4 (lower is better)
Translates to: LLLLSELYKEAILLLEQISETRE*GWCTGS
Trigger: GCTCCCGGTGCACCAGCCTCACTCTCTGGTTTCTGA...TATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR TCA 90 bp GAACCCATGCTTCTCTTCCATGACAAACACCTAGTAAGCAGTCAGCATAAACTCAGCAACAGAGACAGATaGTCCCAACACCAACGGGAG +
Preference number: 4 (lower is better)
Translates to: EPMLLFHDKHLVSSQHKLSNRDR*SQHQRE
Trigger: CTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCT...GAGTTTATGCTGACTGCTTACTAGGTGTTTGTCATGGAAGAGAAGCATGGGTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR GCA 90 bp ATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACACACAGATTTCCTTTCGAATCATaGTCAAGGGCAATTGGGAAG +
Preference number: 4 (lower is better)
Translates to: INSSLTTSDITPRAGTHRFPFES*SRAIGK
Trigger: CTTCCCAATTGCCCTTGAGCATGATTCGAAAGGAAA...TCTGTGTGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp ACAGTTTTATTGAATGTCAAAGCACATTATTCCGCACAGCTGCTAGAGAGGCACGAGACCCACTCTCTGTaGGGCTCTTTCAGGAAACCG +
Preference number: 4 (lower is better)
Translates to: TVLLNVKAHYSAQLLERHETHSL*GSFRKP
Trigger: CGGTTTCCTGAAAGAGCCCCACAGAGAGTGGGTCTC...GTGCCTCTCTAGCAGCTGTGCGGAATAATGTGCTTTGACATTCAATAAAACTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp CTAAAAGCAACAGAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAATGCTCAAGGGCAATTaGGAAGTCACCTCGCTCATA +
Preference number: 4 (lower is better)
Translates to: LKATETDDPNTNGRFQVPMLKGN*EVTSLI
Trigger: TATGAGCGAGGTGACTTCCCAATTGCCCTTGAGCAT...TGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CCA 90 bp CTAAAAGCAACAGAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCATGTTCCAGCATGTCGTaGATTCCTTGCCGAGCAAAA +
Preference number: 4 (lower is better)
Translates to: LKATETDDPNTNGRFQVPCSSMS*IPCRAK
Trigger: TTTTGCTCGGCAAGGAATCCACGACATGCTGGAACA...TGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CCA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGAGGGCCAAGGTGATGTaGTTTTGTAATTTTTCATTC +
Preference number: 4 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLRAKVM*FCNFSF
Trigger: GAATGAAAAATTACAAAACCACATCACCTTGGCCCT...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR TCA 90 bp CTCCTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATATGGGCTTTACGGATGTaGGCAGGAGGTCTCACTGGC +
Preference number: 4 (lower is better)
Translates to: LLLLSELYKEAILLLEQIWALRM*AGGLTG
Trigger: GCCAGTGAGACCTCCTGCTCACATCCGTAAAGCCCA...TATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR TCA 90 bp CTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCGCCCACCATCTCAGCTaGCACAACCAGATGCTGGAG +
Preference number: 4 (lower is better)
Translates to: LLLSELYKEAILLLEQISAHHLS*HNQMLE
Trigger: CTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGC...GCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR TCA 90 bp TCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCACAGTACACGGTTGCAACGAGCCATaGTCGCGCCACTGCACTCCA +
Preference number: 4 (lower is better)
Translates to: SELYKEAILLLEQISTVHGCNEP*SRHCTP
Trigger: TGGAGTGCAGTGGCGCGATCATGGCTCGTTGCAACC...GTGTACTGTGCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000337019.7
CDS-3UTR TCA 90 bp GACATCACCCCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGTATTGTCTATACAACTaGAGGTTTAACTCGGACTCC +
Preference number: 4 (lower is better)
Translates to: DITPRAGTHRTAIAELHMYCLYN*RFNSDS
Trigger: GGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATA...CATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGTGATGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR GCA 90 bp TTTATTGTCTATACAACTGAAGGTTTAACTCGGACTCCTGCTTCTGTCGGAGCTTTCTTTAAATGCCCCTaGAGCTGGAGGGCCTCTCAC +
Preference number: 4 (lower is better)
Translates to: FIVYTTEGLTRTPASVGAFFKCP*SWRASH
Trigger: GTGAGAGGCCCTCCAGCTGCAGGGGCATTTAAAGAA...AGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR GCA 90 bp CCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGAAAATTATATGGTCTTTCTTTAAATaGCCCTGCAGCTGGAGGGCC +
Preference number: 4 (lower is better)
Translates to: PRAGTHRTAIAELHMKIIWSFFK*PCSWRA
Trigger: GGCCCTCCAGCTGCAGGGGCATTTAAAGAAAGACCA...TATAATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR GCA 90 bp GACACAACCAGATGCTGGAGGACCTTGAGAGTGACACAGATGACCTGTCGGTTTATAGAATTTTCGAAATaGTGTGGGCTTGGTTGGTCT +
Preference number: 4 (lower is better)
Translates to: DTTRCWRTLRVTQMTCRFIEFSK*CGLGWS
Trigger: AGACCAACCAAGCCCACAGCATTTCGAAAATTCTAT...AAACCGACAGGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR GCA 90 bp ATAGGGCTAACAGTCCAATGGCCCATAAGCCACTATTTTAGCAGCTGTAGAAAAGCTGGCTGTAGTCAATaGCGTCTCCGGAGTTCACAT +
Preference number: 4 (lower is better)
Translates to: IGLTVQWPISHYFSSCRKAGCSQ*RLRSSH
Trigger: ATGTGAACTCCGGAGACGGCATTGACTACAGCCAGC...TTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CCA 90 bp ATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACACACAGAATTTTCGAAATGCTGTaGGCTTGGTTGGTCTTTCTT +
Preference number: 4 (lower is better)
Translates to: INSSLTTSDITPRAGTHRIFEML*AWLVFL
Trigger: AAGAAAGACCAACCAAGCCCACAGCATTTCGAAAAT...TCTGTGTGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp ATTGAATGTCAAAGCACATTATTCCGCACAGCTGCTAGAGAGGCACTGCTGAACTGTTCCAGCATGTCGTaGATTCCTTGCCGAGCAAAA +
Preference number: 4 (lower is better)
Translates to: IECQSTLFRTAAREALLNCSSMS*IPCRAK
Trigger: TTTTGCTCGGCAAGGAATCCACGACATGCTGGAACA...GTTCAGCAGTGCCTCTCTAGCAGCTGTGCGGAATAATGTGCTTTGACATTCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp ATAGGGCTAACAGTCCAATGGCCCATAAGCCACTATTTTAGCAGCTGTAGAAAAGCCTCCAGTGTCTCCTaGATCAAGTCCCCAATGTTC +
Preference number: 4 (lower is better)
Translates to: IGLTVQWPISHYFSSCRKASSVS*IKSPMF
Trigger: GAACATTGGGGACTTGATCCAGGAGACACTGGAGGC...TTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CCA 90 bp GCATTATTCTGCTATTCATTGGAAGACATGATTCGCTGCCGTCTGTCAGTAGTTGCCTCCAGTGTCTCCTaGATCAAGTCCCCAATGTTC +
Preference number: 4 (lower is better)
Translates to: ALFCYSLEDMIRCRLSVVASSVS*IKSPMF
Trigger: GAACATTGGGGACTTGATCCAGGAGACACTGGAGGC...AACTACTGACAGACGGCAGCGAATCATGTCTTCCAATGAATAGCAGAATAATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR CCA 90 bp CTAAAAGCAACAGAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCAAGACTCGTAGGTTaGGACCACGTACTTAATGTT +
Preference number: 4 (lower is better)
Translates to: LKATETDDPNTNGRFQVPARLVG*DHVLNV
Trigger: AACATTAAGTACGTGGTCCCAACCTACGAGTCTTGC...TGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR TCA 90 bp ATTGAATGTCAAAGCACATTATTCCGCACAGCTGCTAGAGAGGCACTGCTGAACCATGCTTCTCTTCCATaGCAAACACCTAGTAAGCAG +
Preference number: 4 (lower is better)
Translates to: IECQSTLFRTAAREALLNHASLP*QTPSKQ
Trigger: CTGCTTACTAGGTGTTTGTCATGGAAGAGAAGCATG...GTTCAGCAGTGCCTCTCTAGCAGCTGTGCGGAATAATGTGCTTTGACATTCAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR GCA 90 bp TTTCCAATTTCCAGCATTATTCTGCTATTCATTGGAAGACATGATTCGCTGCCGGCTGGCTGTAGTCAATaGCGTCTCCGGAGTTCACAT +
Preference number: 4 (lower is better)
Translates to: FPISSIILLFIGRHDSLPAGCSQ*RLRSSH
Trigger: ATGTGAACTCCGGAGACGGCATTGACTACAGCCAGC...CGGCAGCGAATCATGTCTTCCAATGAATAGCAGAATAATGCTGGAAATTGGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR CCA 90 bp TTTATTGTCTATACAACTGAAGGTTTAACTCGGACTCCTGCTTCTGTCGGAGCTGACACAACCAGATGCTaGAGGACCTTGAGAGTGACA +
Preference number: 4 (lower is better)
Translates to: FIVYTTEGLTRTPASVGADTTRC*RTLRVT
Trigger: TGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTC...AGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CCA 90 bp ATTGAATGTCAAAGCACATTATTCCGCACAGCTGCTAGAGAGGCACTGCTGAACGGGCTAACAGTCCAATaGCCCATAAGCCACTATTTT +
Preference number: 4 (lower is better)
Translates to: IECQSTLFRTAAREALLNGLTVQ*PISHYF
Trigger: AAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCC...GTTCAGCAGTGCCTCTCTAGCAGCTGTGCGGAATAATGTGCTTTGACATTCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR TCA 90 bp ACAGTTTTATTGAATGTCAAAGCACATTATTCCGCACAGCTGCTAGAGAGGCACAGGGCCTCTCACGACTaGGTTTTTCATCATGGCTTT +
Preference number: 4 (lower is better)
Translates to: TVLLNVKAHYSAQLLERHRASHD*VFHHGF
Trigger: AAAGCCATGATGAAAAACTCAGTCGTGAGAGGCCCT...GTGCCTCTCTAGCAGCTGTGCGGAATAATGTGCTTTGACATTCAATAAAACTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR TCA 90 bp ATAGGGCTAACAGTCCAATGGCCCATAAGCCACTATTTTAGCAGCTGTAGAAAAAGGGCCTCTCACGACTaGGTTTTTCATCATGGCTTT +
Preference number: 4 (lower is better)
Translates to: IGLTVQWPISHYFSSCRKRASHD*VFHHGF
Trigger: AAAGCCATGATGAAAAACTCAGTCGTGAGAGGCCCT...TTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCCTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR GCA 90 bp CTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCTTCTTTAAATGCCCCTaGAGCTGGAGGGCCTCTCAC +
Preference number: 4 (lower is better)
Translates to: LLLSELYKEAILLLEQISFFKCP*SWRASH
Trigger: GTGAGAGGCCCTCCAGCTGCAGGGGCATTTAAAGAA...GCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR GCA 90 bp CTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCGCTGACACAACCAGATaGTGGAGGACCTTGAGAGTG +
Preference number: 4 (lower is better)
Translates to: LLLSELYKEAILLLEQISADTTR*WRTLRV
Trigger: CACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGC...GCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR GCA 90 bp CCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGAAAATTATAGCACTGCTGAACCCATaGTTCTCTTCCATGACAAAC +
Preference number: 4 (lower is better)
Translates to: PRAGTHRTAIAELHMKIIALLNP*FSSMTN
Trigger: GTTTGTCATGGAAGAGAAGCATGGGTTCAGCAGTGC...TATAATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp CTCCTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAGTTGTGCCAGCAGCTTaGTCCTCTTCGGCATCTTGT +
Preference number: 4 (lower is better)
Translates to: LLLLSELYKEAILLLEQIVVPAA*SSSASC
Trigger: ACAAGATGCCGAAGAGGACCAAGCTGCTGGCACAAC...TATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CCA 90 bp TTTATTGTCTATACAACTGAAGGTTTAACTCGGACTCCTGCTTCTGTCGGAGCTTGCTGTGGGCTTGGTTaGTCTTTCTTTAAATGCCCC +
Preference number: 4 (lower is better)
Translates to: FIVYTTEGLTRTPASVGACCGLG*SFFKCP
Trigger: GGGGCATTTAAAGAAAGACCAACCAAGCCCACAGCA...AGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CCA 90 bp CCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGAAAATTATATGCTGTGGGCTTGGTTaGTCTTTCTTTAAATGCCCC +
Preference number: 4 (lower is better)
Translates to: PRAGTHRTAIAELHMKIICCGLG*SFFKCP
Trigger: GGGGCATTTAAAGAAAGACCAACCAAGCCCACAGCA...TATAATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp CTCCTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAAGAGGGCAGGACCTTaGCTAGAGCTGCAACAAGCT +
Preference number: 4 (lower is better)
Translates to: LLLLSELYKEAILLLEQIKRAGP*LELQQA
Trigger: AGCTTGTTGCAGCTCTAGCCAAGGTCCTGCCCTCTT...TATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000366888.6
CDS-3UTR TCA 90 bp ATAGGGCTAACAGTCCAATGGCCCATAAGCCACTATTTTAGCAGCTGTAGAAAACATGCTTCTCTTCCATaGCAAACACCTAGTAAGCAG +
Preference number: 4 (lower is better)
Translates to: IGLTVQWPISHYFSSCRKHASLP*QTPSKQ
Trigger: CTGCTTACTAGGTGTTTGTCATGGAAGAGAAGCATG...TTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR GCA 90 bp ACCCCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGAAAATTATAGAATTTTCGAAATaGTGTGGGCTTGGTTGGTCT +
Preference number: 4 (lower is better)
Translates to: TPRAGTHRTAIAELHMKIIEFSK*CGLGWS
Trigger: AGACCAACCAAGCCCACAGCATTTCGAAAATTCTAT...AATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR GCA 90 bp TCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCACAGTACACGCTGACACAACCAGATaGTGGAGGACCTTGAGAGTG +
Preference number: 4 (lower is better)
Translates to: SELYKEAILLLEQISTVHADTTR*WRTLRV
Trigger: CACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGC...GTGTACTGTGCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR GCA 90 bp CCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGAAAATTATATTTAACTCGGACTCCTaGTTCTGTCGGAGCTGTATA +
Preference number: 4 (lower is better)
Translates to: PRAGTHRTAIAELHMKIIFNSDS*FCRSCI
Trigger: TATACAGCTCCGACAGAAGCAGGAGTCCGAGTTAAA...TATAATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CCA 90 bp CTCCTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAGACACAACCAGATGCTaGAGGACCTTGAGAGTGACA +
Preference number: 4 (lower is better)
Translates to: LLLLSELYKEAILLLEQIDTTRC*RTLRVT
Trigger: TGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTC...TATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CCA 90 bp ATAGGGCTAACAGTCCAATGGCCCATAAGCCACTATTTTAGCAGCTGTAGAAAAGCAAGACTCGTAGGTTaGGACCACGTACTTAATGTT +
Preference number: 4 (lower is better)
Translates to: IGLTVQWPISHYFSSCRKARLVG*DHVLNV
Trigger: AACATTAAGTACGTGGTCCCAACCTACGAGTCTTGC...TTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CCA 90 bp CTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCGTTGATCCAGATGTTTaGCAGCTCCTAGGTGAAGGG +
Preference number: 4 (lower is better)
Translates to: LLLSELYKEAILLLEQISVDPDV*QLLGEG
Trigger: CCCTTCACCTAGGAGCTGCCAAACATCTGGATCAAC...GCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000366888.6
CDS-3UTR TCA 90 bp ACAGTTTTATTGAATGTCAAAGCACATTATTCCGCACAGCTGCTAGAGAGGCACGGAAGTCACAAGGAATaGGATGCTAAAAGCAACAGA +
Preference number: 4 (lower is better)
Translates to: TVLLNVKAHYSAQLLERHGSHKE*DAKSNR
Trigger: TCTGTTGCTTTTAGCATCTCATTCCTTGTGACTTCC...GTGCCTCTCTAGCAGCTGTGCGGAATAATGTGCTTTGACATTCAATAAAACTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR TCA 90 bp GCATTATTCTGCTATTCATTGGAAGACATGATTCGCTGCCGTCTGTCAGTAGTTGGAAGTCACAAGGAATaGGATGCTAAAAGCAACAGA +
Preference number: 4 (lower is better)
Translates to: ALFCYSLEDMIRCRLSVVGSHKE*DAKSNR
Trigger: TCTGTTGCTTTTAGCATCTCATTCCTTGTGACTTCC...AACTACTGACAGACGGCAGCGAATCATGTCTTCCAATGAATAGCAGAATAATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR GCA 90 bp TTTATTGTCTATACAACTGAAGGTTTAACTCGGACTCCTGCTTCTGTCGGAGCTCAGGGTCTCTTTTTCTaGCACCATCTTCCTAGAAAA +
Preference number: 4 (lower is better)
Translates to: FIVYTTEGLTRTPASVGAQGLFF*HHLPRK
Trigger: TTTTCTAGGAAGATGGTGGCAGAAAAAGAGACCCTG...AGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CCA 90 bp CTCCTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAATGCTCAAGGGCAATTaGGAAGTCACCTCGCTCATA +
Preference number: 4 (lower is better)
Translates to: LLLLSELYKEAILLLEQIMLKGN*EVTSLI
Trigger: TATGAGCGAGGTGACTTCCCAATTGCCCTTGAGCAT...TATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR TCA 90 bp TCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCACAGTACACAGGGCCTCTCACGACTaGGTTTTTCATCATGGCTTT +
Preference number: 4 (lower is better)
Translates to: SELYKEAILLLEQISTVHRASHD*VFHHGF
Trigger: AAAGCCATGATGAAAAACTCAGTCGTGAGAGGCCCT...GTGTACTGTGCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CCA 90 bp TCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCACAGTACACATGCTCAAGGGCAATTaGGAAGTCACCTCGCTCATA +
Preference number: 4 (lower is better)
Translates to: SELYKEAILLLEQISTVHMLKGN*EVTSLI
Trigger: TATGAGCGAGGTGACTTCCCAATTGCCCTTGAGCAT...GTGTACTGTGCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CCA 90 bp TCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCACAGTACACTGTTCCAGCATGTCGTaGATTCCTTGCCGAGCAAAA +
Preference number: 4 (lower is better)
Translates to: SELYKEAILLLEQISTVHCSSMS*IPCRAK
Trigger: TTTTGCTCGGCAAGGAATCCACGACATGCTGGAACA...GTGTACTGTGCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR TCA 90 bp CTCCTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAGGAAGTCACAAGGAATaGGATGCTAAAAGCAACAGA +
Preference number: 4 (lower is better)
Translates to: LLLLSELYKEAILLLEQIGSHKE*DAKSNR
Trigger: TCTGTTGCTTTTAGCATCTCATTCCTTGTGACTTCC...TATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR TCA 90 bp TCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCACAGTACACGGAAGTCACAAGGAATaGGATGCTAAAAGCAACAGA +
Preference number: 4 (lower is better)
Translates to: SELYKEAILLLEQISTVHGSHKE*DAKSNR
Trigger: TCTGTTGCTTTTAGCATCTCATTCCTTGTGACTTCC...GTGTACTGTGCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR TCA 90 bp CTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCTATTGTCTATACAACTaGAGGTTTAACTCGGACTCC +
Preference number: 4 (lower is better)
Translates to: LLLSELYKEAILLLEQISYCLYN*RFNSDS
Trigger: GGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATA...GCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR TCA 90 bp CTCCTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATATATTGTCTATACAACTaGAGGTTTAACTCGGACTCC +
Preference number: 4 (lower is better)
Translates to: LLLLSELYKEAILLLEQIYCLYN*RFNSDS
Trigger: GGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATA...TATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR GCA 90 bp CTCCTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAATAGAATTTTCGAAATaGTGTGGGCTTGGTTGGTCT +
Preference number: 4 (lower is better)
Translates to: LLLLSELYKEAILLLEQIIEFSK*CGLGWS
Trigger: AGACCAACCAAGCCCACAGCATTTCGAAAATTCTAT...TATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CCA 90 bp CTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCATTTTCGAAATGCTGTaGGCTTGGTTGGTCTTTCTT +
Preference number: 4 (lower is better)
Translates to: LLLSELYKEAILLLEQISIFEML*AWLVFL
Trigger: AAGAAAGACCAACCAAGCCCACAGCATTTCGAAAAT...GCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS GCA 90 bp AGCAAGGTGCAGGTGTGGTGGGAAGGAAGGCTGAGTTCCCCCAGCTaGCGCCTCCTTTCTGTCTCGCTTGTTGGCAGGAGAACCTACGGA +
Preference number: 5 (lower is better)
Translates to: SKVQVWWEGRLSSPS*RLLSVSLVGRRTYG
Trigger: TCCGTAGGTTCTCCTGCCAACAAGCGAGACAGAAAGGAGGCGGCAGCTGGGGGAACTCAGCCTTCCTTCCCACCACACCTGCACCTTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR CAA 90 bp GCAGTCAGCATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCCACCGGGAGCGGCTGTaGTGCCAGCAGCTTGGTCCT +
Preference number: 5 (lower is better)
Translates to: AVSINSSLTTSDITPRAGHRERL*CQQLGP
Trigger: AGGACCAAGCTGCTGGCACAACAGCCGCTCCCGGTG...GCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGACTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp CTCAGCAAGGTGCAGGTGTGGTGGGAAGGAAGGCTGAGTTCCCCCAGCTGCCGCTTTCTGTCTCGCTTGTaGGCAGGAGAACCTACGGAG +
Preference number: 5 (lower is better)
Translates to: LSKVQVWWEGRLSSPSCRFLSRL*AGEPTE
Trigger: CTCCGTAGGTTCTCCTGCCAACAAGCGAGACAGAAA...GCGGCAGCTGGGGGAACTCAGCCTTCCTTCCCACCACACCTGCACCTTGCTGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR CAA 90 bp GTGCAGGTGTGGTGGGAAGGAAGGCTGAGTTCCCCCAGCTGCCGCCTCCTTTCTCACCAAATGAGTAGGTaGAAGCCAGGCTGCTCTGGG +
Preference number: 5 (lower is better)
Translates to: VQVWWEGRLSSPSCRLLSHQMSR*KPGCSG
Trigger: CCCAGAGCAGCCTGGCTTCAACCTACTCATTTGGTG...AGAAAGGAGGCGGCAGCTGGGGGAACTCAGCCTTCCTTCCCACCACACCTGCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS CCA 90 bp GAGAGTGAGGCTGGTGCACCGGGAGCGGCTGTTGTGCCAGCAGCTTaGTCCTCTTCGGCATCTTGTCTGGGCATTTGTTTAAGCTCAGGG +
Preference number: 5 (lower is better)
Translates to: ESEAGAPGAAVVPAA*SSSASCLGICLSSG
Trigger: CCCTGAGCTTAAACAAATGCCCAGACAAGATGCCGAAGAGGACCAAGCTGCTGGCACAACAGCCGCTCCCGGTGCACCAGCCTCACTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000542669.1
ENST00000544266.1
CDS-3UTR CAA 90 bp CAGGTGTGGTGGGAAGGAAGGCTGAGTTCCCCCAGCTGCCGCCTCCTTTCTGTCAGATGCTGGAGGACCTaGAGAGTGACACAGATGACC +
Preference number: 5 (lower is better)
Translates to: QVWWEGRLSSPSCRLLSVRCWRT*RVTQMT
Trigger: GGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCT...GACAGAAAGGAGGCGGCAGCTGGGGGAACTCAGCCTTCCTTCCCACCACACCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR CAA 90 bp CAGGTGTGGTGGGAAGGAAGGCTGAGTTCCCCCAGCTGCCGCCTCCTTTCTGTCTCCTTTCTGTCTCGCTaGTTGGCAGGAGAACCTACG +
Preference number: 5 (lower is better)
Translates to: QVWWEGRLSSPSCRLLSVSFLSR*LAGEPT
Trigger: CGTAGGTTCTCCTGCCAACAAGCGAGACAGAAAGGA...GACAGAAAGGAGGCGGCAGCTGGGGGAACTCAGCCTTCCTTCCCACCACACCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR CAA 90 bp ATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACACACAGACACCGGGAGCGGCTGTaGTGCCAGCAGCTTGGTCCT +
Preference number: 5 (lower is better)
Translates to: INSSLTTSDITPRAGTHRHRERL*CQQLGP
Trigger: AGGACCAAGCTGCTGGCACAACAGCCGCTCCCGGTG...TCTGTGTGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp GTGCAGGTGTGGTGGGAAGGAAGGCTGAGTTCCCCCAGCTGCCGCCTCCTTTCTCAGGACAGGGAGGATTaGACGGTAATAAGGCACCAA +
Preference number: 5 (lower is better)
Translates to: VQVWWEGRLSSPSCRLLSQDRED*TVIRHQ
Trigger: TTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTG...AGAAAGGAGGCGGCAGCTGGGGGAACTCAGCCTTCCTTCCCACCACACCTGCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS TCA 90 bp TTTTTCATCATGGCTTTGACTGTGAAACCCTCAGAAACCAGAGAGTaGGGCTGGTGCACCGGGAGCGGCTGTTGTGCCAGCAGCTTGGTC +
Preference number: 5 (lower is better)
Translates to: FFIMALTVKPSETRE*GWCTGSGCCASSLV
Trigger: GACCAAGCTGCTGGCACAACAGCCGCTCCCGGTGCACCAGCCTCACTCTCTGGTTTCTGAGGGTTTCACAGTCAAAGCCATGATGAAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000542669.1
ENST00000544266.1
CDS TCA 90 bp GAGATGTCACTTCAGCGGGTGCAGCTGGCCGGCACAGCTGTGCCCTaGCTTACCTTCCAGGCGATTTTGTTTCCTTTCGAATCATGCTCA +
Preference number: 5 (lower is better)
Translates to: EMSLQRVQLAGTAVP*LTFQAILFPFESCS
Trigger: TGAGCATGATTCGAAAGGAAACAAAATCGCCTGGAAGGTAAGTCAGGGCACAGCTGTGCCGGCCAGCTGCACCCGCTGAAGTGACATCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544266.1
CDS CCA 90 bp AAGGCTGAGTTCCCCCAGCTGCCGCCTCCTTTCTGTCTCGCTTGTTaGCAGGAGAACCTACGGAGGAGCCCAGCCATTCATATTCTTAAA +
Preference number: 5 (lower is better)
Translates to: KAEFPQLPPPFCLAC*QENLRRSPAIHILK
Trigger: TTTAAGAATATGAATGGCTGGGCTCCTCCGTAGGTTCTCCTGCCAACAAGCGAGACAGAAAGGAGGCGGCAGCTGGGGGAACTCAGCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR CAA 90 bp AGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGCATGCTCAAGGGCAATaGGGAAGTCACCTCGCTCAT +
Preference number: 5 (lower is better)
Translates to: RQMIPTPTGGFKSQLLPLHAQGQ*GSHLAH
Trigger: ATGAGCGAGGTGACTTCCCAATTGCCCTTGAGCATG...CAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CAA 90 bp GTCAGCATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACAAGGACAGGTAGGATCTaGTTCCCACCGTGTTCCAGC +
Preference number: 5 (lower is better)
Translates to: VSINSSLTTSDITPRAGTRTGRI*FPPCSS
Trigger: GCTGGAACACGGTGGGAACAAGATCCTACCTGTCCT...TGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp GAACCCATGCTTCTCTTCCATGACAAACACCTAGTAAGCAGTCAGCATAAACTCGGTCTCACTGGCCGGTaGTGGTGCGGTTCAGGACCC +
Preference number: 5 (lower is better)
Translates to: EPMLLFHDKHLVSSQHKLGLTGR*WCGSGP
Trigger: GGGTCCTGAACCGCACCACAACCGGCCAGTGAGACC...GAGTTTATGCTGACTGCTTACTAGGTGTTTGTCATGGAAGAGAAGCATGGGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp GACATCACCCCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGTGTTGTGCCAGCAGCTaGGTCCTCTTCGGCATCTTG +
Preference number: 5 (lower is better)
Translates to: DITPRAGTHRTAIAELHMCCASS*VLFGIL
Trigger: CAAGATGCCGAAGAGGACCAAGCTGCTGGCACAACA...CATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGTGATGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp GGATCAAGTCCCCAATGTTCTCCCTCTTCTGCTGGCTGTAGTCAATGCCGTCTCAGATGCTGGAGGACCTaGAGAGTGACACAGATGACC +
Preference number: 5 (lower is better)
Translates to: GSSPQCSPSSAGCSQCRLRCWRT*RVTQMT
Trigger: GGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCT...GAGACGGCATTGACTACAGCCAGCAGAAGAGGGAGAACATTGGGGACTTGATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR CAA 90 bp GAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTCAGGACAGGGAGGATTaGACGGTAATAAGGCACCAA +
Preference number: 5 (lower is better)
Translates to: ETDDPNTNGRFQVPAAATQDRED*TVIRHQ
Trigger: TTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTG...AGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CAA 90 bp AGGCATTTTCTCCTCCGTAGCGCTCGAAGGCCTCCAGTGTCTCCTGGATCAAGTCAGGACAGGGAGGATTaGACGGTAATAAGGCACCAA +
Preference number: 5 (lower is better)
Translates to: RHFLLRSARRPPVSPGSSQDRED*TVIRHQ
Trigger: TTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTG...ACTTGATCCAGGAGACACTGGAGGCCTTCGAGCGCTACGGAGGAGAAAATGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR CAA 90 bp GAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGTCCTCTTCGGCATCTaGTCTGGGCATTTGTTTAAG +
Preference number: 5 (lower is better)
Translates to: ETDDPNTNGRFQVPAAATVLFGI*SGHLFK
Trigger: CTTAAACAAATGCCCAGACAAGATGCCGAAGAGGAC...AGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CAA 90 bp TTTATTGTCTATACAACTGAAGGTTTAACTCGGACTCCTGCTTCTGTCGGAGCTCACCGGGAGCGGCTGTaGTGCCAGCAGCTTGGTCCT +
Preference number: 5 (lower is better)
Translates to: FIVYTTEGLTRTPASVGAHRERL*CQQLGP
Trigger: AGGACCAAGCTGCTGGCACAACAGCCGCTCCCGGTG...AGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CAA 90 bp ATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACACACAGAAGATGCTGGAGGACCTaGAGAGTGACACAGATGACC +
Preference number: 5 (lower is better)
Translates to: INSSLTTSDITPRAGTHRRCWRT*RVTQMT
Trigger: GGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCT...TCTGTGTGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp CTAAAAGCAACAGAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGAAGAGGGCAGGACCTaGGCTAGAGCTGCAACAAGC +
Preference number: 5 (lower is better)
Translates to: LKATETDDPNTNGRFQVPEEGRT*ARAATS
Trigger: GCTTGTTGCAGCTCTAGCCAAGGTCCTGCCCTCTTC...TGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366888.6
CDS CCA 90 bp GAAGTCACCTCGCTCATAGAATTTTCGAAATGCTGTGGGCTTGGTTaGTCTTTCTTTAAATGCCCCTGCAGCTGGAGGGCCTCTCACGAC +
Preference number: 5 (lower is better)
Translates to: EVTSLIEFSKCCGLG*SFFKCPCSWRASHD
Trigger: GTCGTGAGAGGCCCTCCAGCTGCAGGGGCATTTAAAGAAAGACCAACCAAGCCCACAGCATTTCGAAAATTCTATGAGCGAGGTGACTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000542669.1
ENST00000544266.1
CDS-3UTR CAA 90 bp GAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTATCTTGTCTGGGCATTaGTTTAAGCTCAGGGTCTCT +
Preference number: 5 (lower is better)
Translates to: ETDDPNTNGRFQVPAAATILSGH*FKLRVS
Trigger: AGAGACCCTGAGCTTAAACAAATGCCCAGACAAGAT...AGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CAA 90 bp GCAGTCAGCATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACCTTCCAGGCGATTTaGTTTCCTTTCGAATCATGC +
Preference number: 5 (lower is better)
Translates to: AVSINSSLTTSDITPRAGTFQAI*FPFESC
Trigger: GCATGATTCGAAAGGAAACAAAATCGCCTGGAAGGT...GCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGACTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp CTAAAAGCAACAGAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCACTCGTAGTGCCCAGGTaGATCCAGATGTTTGGCAGC +
Preference number: 5 (lower is better)
Translates to: LKATETDDPNTNGRFQVPLVVPR*IQMFGS
Trigger: GCTGCCAAACATCTGGATCAACCTGGGCACTACGAG...TGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366888.6
CDS-3UTR CAA 90 bp AAAGAACACCAAATGAGTAGGTTGAAGCCAGGCTGCTCTGGGAATTCTGTGCCTATTCTGTGCCTCGTCTaGGGAGCAGTGGCTCAGCAA +
Preference number: 5 (lower is better)
Translates to: KEHQMSRLKPGCSGNSVPILCLV*GAVAQQ
Trigger: TTGCTGAGCCACTGCTCCCAAGACGAGGCACAGAAT...AGGCACAGAATTCCCAGAGCAGCCTGGCTTCAACCTACTCATTTGGTGTTCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR CAA 90 bp GCAGTCAGCATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCCGAAATGCTGTGGGCTaGGTTGGTCTTTCTTTAAAT +
Preference number: 5 (lower is better)
Translates to: AVSINSSLTTSDITPRAGRNAVG*VGLSLN
Trigger: ATTTAAAGAAAGACCAACCAAGCCCACAGCATTTCG...GCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGACTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp CTAAAAGCAACAGAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCACATGCTCAAGGGCAATaGGGAAGTCACCTCGCTCAT +
Preference number: 5 (lower is better)
Translates to: LKATETDDPNTNGRFQVPHAQGQ*GSHLAH
Trigger: ATGAGCGAGGTGACTTCCCAATTGCCCTTGAGCATG...TGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CAA 90 bp CAAATGAGTAGGTTGAAGCCAGGCTGCTCTGGGAATTCTGTGCCTCGTCTTGGGACCTTCCAGGCGATTTaGTTTCCTTTCGAATCATGC +
Preference number: 5 (lower is better)
Translates to: QMSRLKPGCSGNSVPRLGTFQAI*FPFESC
Trigger: GCATGATTCGAAAGGAAACAAAATCGCCTGGAAGGT...CCCAAGACGAGGCACAGAATTCCCAGAGCAGCCTGGCTTCAACCTACTCATTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS GCA 90 bp CTCAAGGGCAATTGGGAAGTCACCTCGCTCATAGAATTTTCGAAATaGTGTGGGCTTGGTTGGTCTTTCTTTAAATGCCCCTGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: LKGNWEVTSLIEFSK*CGLGWSFFKCPCSW
Trigger: CCAGCTGCAGGGGCATTTAAAGAAAGACCAACCAAGCCCACAGCATTTCGAAAATTCTATGAGCGAGGTGACTTCCCAATTGCCCTTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
ENST00000542669.1
ENST00000544266.1
CDS-3UTR CAA 90 bp TCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCACAGTACACGGTCTCACTGGCCGGTaGTGGTGCGGTTCAGGACCC +
Preference number: 5 (lower is better)
Translates to: SELYKEAILLLEQISTVHGLTGR*WCGSGP
Trigger: GGGTCCTGAACCGCACCACAACCGGCCAGTGAGACC...GTGTACTGTGCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp GAACCCATGCTTCTCTTCCATGACAAACACCTAGTAAGCAGTCAGCATAAACTCTGTTGTGCCAGCAGCTaGGTCCTCTTCGGCATCTTG +
Preference number: 5 (lower is better)
Translates to: EPMLLFHDKHLVSSQHKLCCASS*VLFGIL
Trigger: CAAGATGCCGAAGAGGACCAAGCTGCTGGCACAACA...GAGTTTATGCTGACTGCTTACTAGGTGTTTGTCATGGAAGAGAAGCATGGGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp GAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTTTTTTCATCATGGCTTaGACTGTGAAACCCTCAGAA +
Preference number: 5 (lower is better)
Translates to: ETDDPNTNGRFQVPAAATFFIMA*TVKPSE
Trigger: TTCTGAGGGTTTCACAGTCAAAGCCATGATGAAAAA...AGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTC
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CAA 90 bp TTTAAAGAACACCAAATGAGTAGGTTGAAGCCAGGCTGCTCTGGGAATTCTGTGAGGACAGGTAGGATCTaGTTCCCACCGTGTTCCAGC +
Preference number: 5 (lower is better)
Translates to: FKEHQMSRLKPGCSGNSVRTGRI*FPPCSS
Trigger: GCTGGAACACGGTGGGAACAAGATCCTACCTGTCCT...CACAGAATTCCCAGAGCAGCCTGGCTTCAACCTACTCATTTGGTGTTCTTTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS-3UTR CAA 90 bp CTAAAAGCAACAGAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCACAGGACAGGGAGGATTaGACGGTAATAAGGCACCAA +
Preference number: 5 (lower is better)
Translates to: LKATETDDPNTNGRFQVPQDRED*TVIRHQ
Trigger: TTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTG...TGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CAA 90 bp GAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTTTATTCTGCTATTCATaGGAAGACATGATTCGCTGC +
Preference number: 5 (lower is better)
Translates to: ETDDPNTNGRFQVPAAATLFCYS*EDMIRC
Trigger: GCAGCGAATCATGTCTTCCAATGAATAGCAGAATAA...AGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR CAA 90 bp ATAGGGCTAACAGTCCAATGGCCCATAAGCCACTATTTTAGCAGCTGTAGAAAATGTTGTGCCAGCAGCTaGGTCCTCTTCGGCATCTTG +
Preference number: 5 (lower is better)
Translates to: IGLTVQWPISHYFSSCRKCCASS*VLFGIL
Trigger: CAAGATGCCGAAGAGGACCAAGCTGCTGGCACAACA...TTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CAA 90 bp ATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACACACAGACGAAATGCTGTGGGCTaGGTTGGTCTTTCTTTAAAT +
Preference number: 5 (lower is better)
Translates to: INSSLTTSDITPRAGTHRRNAVG*VGLSLN
Trigger: ATTTAAAGAAAGACCAACCAAGCCCACAGCATTTCG...TCTGTGTGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp GACACAACCAGATGCTGGAGGACCTTGAGAGTGACACAGATGACCTGTCGGTTTCGAAATGCTGTGGGCTaGGTTGGTCTTTCTTTAAAT +
Preference number: 5 (lower is better)
Translates to: DTTRCWRTLRVTQMTCRFRNAVG*VGLSLN
Trigger: ATTTAAAGAAAGACCAACCAAGCCCACAGCATTTCG...AAACCGACAGGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR CAA 90 bp ATAGGGCTAACAGTCCAATGGCCCATAAGCCACTATTTTAGCAGCTGTAGAAAAAGGACAGGTAGGATCTaGTTCCCACCGTGTTCCAGC +
Preference number: 5 (lower is better)
Translates to: IGLTVQWPISHYFSSCRKRTGRI*FPPCSS
Trigger: GCTGGAACACGGTGGGAACAAGATCCTACCTGTCCT...TTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCCTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CAA 90 bp ATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACACACAGAATGTATTGGAAAGCCTaGCTCTCAATAGGGCTAACA +
Preference number: 5 (lower is better)
Translates to: INSSLTTSDITPRAGTHRMYWKA*LSIGLT
Trigger: TGTTAGCCCTATTGAGAGCAAGGCTTTCCAATACAT...TCTGTGTGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp GAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAGCTGCTGCCACTGACACTATTTATGTATaGGAAAGCCTTGCTCTCAAT +
Preference number: 5 (lower is better)
Translates to: ETDDPNTNGRFQVPAAATDTIYV*ESLALN
Trigger: ATTGAGAGCAAGGCTTTCCAATACATAAATAGTGTC...AGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CAA 90 bp CTAAAAGCAACAGAGACAGATGATCCCAACACCAACGGGAGGTTTCAAGTCCCAATCTTGTCTGGGCATTaGTTTAAGCTCAGGGTCTCT +
Preference number: 5 (lower is better)
Translates to: LKATETDDPNTNGRFQVPILSGH*FKLRVS
Trigger: AGAGACCCTGAGCTTAAACAAATGCCCAGACAAGAT...TGGGACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CAA 90 bp ACAGTTTTATTGAATGTCAAAGCACATTATTCCGCACAGCTGCTAGAGAGGCACCATGCTCAAGGGCAATaGGGAAGTCACCTCGCTCAT +
Preference number: 5 (lower is better)
Translates to: TVLLNVKAHYSAQLLERHHAQGQ*GSHLAH
Trigger: ATGAGCGAGGTGACTTCCCAATTGCCCTTGAGCATG...GTGCCTCTCTAGCAGCTGTGCGGAATAATGTGCTTTGACATTCAATAAAACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp TTTCCAATTTCCAGCATTATTCTGCTATTCATTGGAAGACATGATTCGCTGCCGAGGACAGGTAGGATCTaGTTCCCACCGTGTTCCAGC +
Preference number: 5 (lower is better)
Translates to: FPISSIILLFIGRHDSLPRTGRI*FPPCSS
Trigger: GCTGGAACACGGTGGGAACAAGATCCTACCTGTCCT...CGGCAGCGAATCATGTCTTCCAATGAATAGCAGAATAATGCTGGAAATTGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR CAA 90 bp ATAGGGCTAACAGTCCAATGGCCCATAAGCCACTATTTTAGCAGCTGTAGAAAAAGATGCTGGAGGACCTaGAGAGTGACACAGATGACC +
Preference number: 5 (lower is better)
Translates to: IGLTVQWPISHYFSSCRKRCWRT*RVTQMT
Trigger: GGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCT...TTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCCTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
CDS-3UTR CAA 90 bp GTCAGCATAAACTCTTCCCTTACAACCTCTGACATCACCCCCAGGGCAGGCACAACCACGTACTTAATGTaGATAAAGGCATTTTCTCCT +
Preference number: 5 (lower is better)
Translates to: VSINSSLTTSDITPRAGTTTYLM*IKAFSP
Trigger: AGGAGAAAATGCCTTTATCAACATTAAGTACGTGGT...TGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS CCA 90 bp CTTCCAGGCGATTTTGTTTCCTTTCGAATCATGCTCAAGGGCAATTaGGAAGTCACCTCGCTCATAGAATTTTCGAAATGCTGTGGGCTT +
Preference number: 5 (lower is better)
Translates to: LPGDFVSFRIMLKGN*EVTSLIEFSKCCGL
Trigger: AAGCCCACAGCATTTCGAAAATTCTATGAGCGAGGTGACTTCCCAATTGCCCTTGAGCATGATTCGAAAGGAAACAAAATCGCCTGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
ENST00000542669.1
ENST00000544266.1
CDS-3UTR CAA 90 bp CTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGCAGGACAGGTAGGATCTaGTTCCCACCGTGTTCCAGC +
Preference number: 5 (lower is better)
Translates to: LLLSELYKEAILLLEQISRTGRI*FPPCSS
Trigger: GCTGGAACACGGTGGGAACAAGATCCTACCTGTCCT...GCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CAA 90 bp CAATGTTCTCCCTCTTCTGCTGGCTGTAGTCAATGCCGTCTCCGGAGTTCACATACCACGTACTTAATGTaGATAAAGGCATTTTCTCCT +
Preference number: 5 (lower is better)
Translates to: QCSPSSAGCSQCRLRSSHTTYLM*IKAFSP
Trigger: AGGAGAAAATGCCTTTATCAACATTAAGTACGTGGT...ATGTGAACTCCGGAGACGGCATTGACTACAGCCAGCAGAAGAGGGAGAACATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS CCA 90 bp GTAGAAAGACAAGGAGCAAGTCTGGACCTCCCCACTTCGCTAACATaGAGGACAATTCACTTCTTTGTCGATGGGTTACATTCATATTCT +
Preference number: 5 (lower is better)
Translates to: VERQGASLDLPTSLT*RTIHFFVDGLHSYS
Trigger: AGAATATGAATGTAACCCATCGACAAAGAAGTGAATTGTCCTCCATGTTAGCGAAGTGGGGAGGTCCAGACTTGCTCCTTGTCTTTCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542936.1
CDS-3UTR CAA 90 bp GAACCCATGCTTCTCTTCCATGACAAACACCTAGTAAGCAGTCAGCATAAACTCACCTTCCAGGCGATTTaGTTTCCTTTCGAATCATGC +
Preference number: 5 (lower is better)
Translates to: EPMLLFHDKHLVSSQHKLTFQAI*FPFESC
Trigger: GCATGATTCGAAAGGAAACAAAATCGCCTGGAAGGT...GAGTTTATGCTGACTGCTTACTAGGTGTTTGTCATGGAAGAGAAGCATGGGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp CTCCTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATAAGATGCTGGAGGACCTaGAGAGTGACACAGATGACC +
Preference number: 5 (lower is better)
Translates to: LLLLSELYKEAILLLEQIRCWRT*RVTQMT
Trigger: GGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCT...TATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CAA 90 bp TTTATTGTCTATACAACTGAAGGTTTAACTCGGACTCCTGCTTCTGTCGGAGCTACCTTCCAGGCGATTTaGTTTCCTTTCGAATCATGC +
Preference number: 5 (lower is better)
Translates to: FIVYTTEGLTRTPASVGATFQAI*FPFESC
Trigger: GCATGATTCGAAAGGAAACAAAATCGCCTGGAAGGT...AGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CAA 90 bp CTCCTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATACAGGACAGGGAGGATTaGACGGTAATAAGGCACCAA +
Preference number: 5 (lower is better)
Translates to: LLLLSELYKEAILLLEQIQDRED*TVIRHQ
Trigger: TTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTG...TATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CAA 90 bp CTGCTGGCTGTAGTCAATGCCGTCTCCGGAGTTCACATTCATATTCTTAAAGATATCTTCCAGGCGATTTaGTTTCCTTTCGAATCATGC +
Preference number: 5 (lower is better)
Translates to: LLAVVNAVSGVHIHILKDIFQAI*FPFESC
Trigger: GCATGATTCGAAAGGAAACAAAATCGCCTGGAAGAT...ATCTTTAAGAATATGAATGTGAACTCCGGAGACGGCATTGACTACAGCCAGCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS GCA 90 bp CAATTTCCAGCATTATTCTGCTATTCATTGGAAGACATGATTCGCTaGCGTCTGTCAGTAGTTTTCATCTGTTACTTAAGGGCCAAGGTG +
Preference number: 5 (lower is better)
Translates to: QFPALFCYSLEDMIR*RLSVVFICYLRAKV
Trigger: CACCTTGGCCCTTAAGTAACAGATGAAAACTACTGACAGACGGCAGCGAATCATGTCTTCCAATGAATAGCAGAATAATGCTGGAAATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS-3UTR CAA 90 bp TTTATTGTCTATACAACTGAAGGTTTAACTCGGACTCCTGCTTCTGTCGGAGCTATGTATTGGAAAGCCTaGCTCTCAATAGGGCTAACA +
Preference number: 5 (lower is better)
Translates to: FIVYTTEGLTRTPASVGAMYWKA*LSIGLT
Trigger: TGTTAGCCCTATTGAGAGCAAGGCTTTCCAATACAT...AGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CAA 90 bp ACCCCCAGGGCAGGCACACACAGAACAGCAATTGCTGAATTGCATATGAAAATTGACACTATTTATGTATaGGAAAGCCTTGCTCTCAAT +
Preference number: 5 (lower is better)
Translates to: TPRAGTHRTAIAELHMKIDTIYV*ESLALN
Trigger: ATTGAGAGCAAGGCTTTCCAATACATAAATAGTGTC...AATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp ATAGGGCTAACAGTCCAATGGCCCATAAGCCACTATTTTAGCAGCTGTAGAAAATTTTTCATCATGGCTTaGACTGTGAAACCCTCAGAA +
Preference number: 5 (lower is better)
Translates to: IGLTVQWPISHYFSSCRKFFIMA*TVKPSE
Trigger: TTCTGAGGGTTTCACAGTCAAAGCCATGATGAAAAA...TTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCCTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CAA 90 bp GAACCCATGCTTCTCTTCCATGACAAACACCTAGTAAGCAGTCAGCATAAACTCACCACGTACTTAATGTaGATAAAGGCATTTTCTCCT +
Preference number: 5 (lower is better)
Translates to: EPMLLFHDKHLVSSQHKLTTYLM*IKAFSP
Trigger: AGGAGAAAATGCCTTTATCAACATTAAGTACGTGGT...GAGTTTATGCTGACTGCTTACTAGGTGTTTGTCATGGAAGAGAAGCATGGGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337019.7
ENST00000366889.6
CDS-3UTR CAA 90 bp CTCCTGCTTCTGTCGGAGCTGTATAAAGAAGCAATTCTTCTCTTAGAACAAATACGAAATGCTGTGGGCTaGGTTGGTCTTTCTTTAAAT +
Preference number: 5 (lower is better)
Translates to: LLLLSELYKEAILLLEQIRNAVG*VGLSLN
Trigger: ATTTAAAGAAAGACCAACCAAGCCCACAGCATTTCG...TATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CAA 90 bp TTTATTGTCTATACAACTGAAGGTTTAACTCGGACTCCTGCTTCTGTCGGAGCTACCACGTACTTAATGTaGATAAAGGCATTTTCTCCT +
Preference number: 5 (lower is better)
Translates to: FIVYTTEGLTRTPASVGATTYLM*IKAFSP
Trigger: AGGAGAAAATGCCTTTATCAACATTAAGTACGTGGT...AGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS-3UTR CAA 90 bp TTTATTGTCTATACAACTGAAGGTTTAACTCGGACTCCTGCTTCTGTCGGAGCTGACACTATTTATGTATaGGAAAGCCTTGCTCTCAAT +
Preference number: 5 (lower is better)
Translates to: FIVYTTEGLTRTPASVGADTIYV*ESLALN
Trigger: ATTGAGAGCAAGGCTTTCCAATACATAAATAGTGTC...AGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
CDS GCA 72 bp CAGAGAGTGAGGCTGGTGCACCGGGAGCGGCTGTTGTaGCAGCAGCTTGGTCCTCTTCGGCATCTTGTCTGG +
Preference number: 6 (lower is better)
Translates to: QRVRLVHRERLL*QQLGPLRHLVW
Trigger: CCAGACAAGATGCCGAAGAGGACCAAGCTGCTGGCACAACAGCCGCTCCCGGTGCACCAGCCTCACTCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000542669.1
ENST00000544266.1
CDS CAA 72 bp GTTCCCCCAGCTGCCGCCTCCTTTCTGTCTCGCTTGTaGGCAGGAGAACCTACGGAGGAGCCCAGCCATTCA +
Preference number: 6 (lower is better)
Translates to: VPPAAASFLSRL*AGEPTEEPSHS
Trigger: TGAATGGCTGGGCTCCTCCGTAGGTTCTCCTGCCAACAAGCGAGACAGAAAGGAGGCGGCAGCTGGGGGAAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS CCA 72 bp TTCCCCCAGCTGCCGCCTCCTTTCTGTCTCGCTTGTTaGCAGGAGAACCTACGGAGGAGCCCAGCCATTCAT +
Preference number: 6 (lower is better)
Translates to: FPQLPPPFCLAC*QENLRRSPAIH
Trigger: ATGAATGGCTGGGCTCCTCCGTAGGTTCTCCTGCCAACAAGCGAGACAGAAAGGAGGCGGCAGCTGGGGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000534958.5
CDS CAA 72 bp GGCTGGTGCACCGGGAGCGGCTGTTGTGCCAGCAGCTaGGTCCTCTTCGGCATCTTGTCTGGGCATTTGTTT +
Preference number: 6 (lower is better)
Translates to: GWCTGSGCCASS*VLFGILSGHLF
Trigger: AAACAAATGCCCAGACAAGATGCCGAAGAGGACCAAGCTGCTGGCACAACAGCCGCTCCCGGTGCACCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000542669.1
ENST00000544266.1
CDS TCA 72 bp ATGGCTTTGACTGTGAAACCCTCAGAAACCAGAGAGTaGGGCTGGTGCACCGGGAGCGGCTGTTGTGCCAGC +
Preference number: 6 (lower is better)
Translates to: MALTVKPSETRE*GWCTGSGCCAS
Trigger: GCTGGCACAACAGCCGCTCCCGGTGCACCAGCCTCACTCTCTGGTTTCTGAGGGTTTCACAGTCAAAGCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000542669.1
ENST00000544266.1
CDS TCA 72 bp CTTCAGCGGGTGCAGCTGGCCGGCACAGCTGTGCCCTaGCTTACCTTCCAGGCGATTTTGTTTCCTTTCGAA +
Preference number: 6 (lower is better)
Translates to: LQRVQLAGTAVP*LTFQAILFPFE
Trigger: TTCGAAAGGAAACAAAATCGCCTGGAAGGTAAGTCAGGGCACAGCTGTGCCGGCCAGCTGCACCCGCTGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544266.1
CDS GCA 72 bp TGTCACTTCAGCGGGTGCAGCTGGCCGGCACAGCTGTaGCCTGACTTACCTTCCAGGCGATTTTGTTTCCTT +
Preference number: 6 (lower is better)
Translates to: CHFSGCSWPAQL*PDLPSRRFCFL
Trigger: AAGGAAACAAAATCGCCTGGAAGGTAAGTCAGGGCACAGCTGTGCCGGCCAGCTGCACCCGCTGAAGTGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544266.1
CDS CAA 72 bp GGCTGTTGTGCCAGCAGCTTGGTCCTCTTCGGCATCTaGTCTGGGCATTTGTTTAAGCTCAGGGTCTCTTTT +
Preference number: 6 (lower is better)
Translates to: GCCASSLVLFGI*SGHLFKLRVSF
Trigger: AAAAGAGACCCTGAGCTTAAACAAATGCCCAGACAAGATGCCGAAGAGGACCAAGCTGCTGGCACAACAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000542669.1
ENST00000544266.1
CDS CCA 72 bp CAAGGAGCAAGTCTGGACCTCCCCACTTCGCTAACATaGAGGACAATTCACTTCTTTGTCGATGGGTTACAT +
Preference number: 6 (lower is better)
Translates to: QGASLDLPTSLT*RTIHFFVDGLH
Trigger: ATGTAACCCATCGACAAAGAAGTGAATTGTCCTCCATGTTAGCGAAGTGGGGAGGTCCAGACTTGCTCCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542936.1
CDS GCA 72 bp AATTGGGAAGTCACCTCGCTCATAGAATTTTCGAAATaGTGTGGGCTTGGTTGGTCTTTCTTTAAATGCCCC +
Preference number: 6 (lower is better)
Translates to: NWEVTSLIEFSK*CGLGWSFFKCP
Trigger: GGGGCATTTAAAGAAAGACCAACCAAGCCCACAGCATTTCGAAAATTCTATGAGCGAGGTGACTTCCCAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
ENST00000542669.1
ENST00000544266.1
CDS CCA 72 bp GATTTTGTTTCCTTTCGAATCATGCTCAAGGGCAATTaGGAAGTCACCTCGCTCATAGAATTTTCGAAATGC +
Preference number: 6 (lower is better)
Translates to: DFVSFRIMLKGN*EVTSLIEFSKC
Trigger: GCATTTCGAAAATTCTATGAGCGAGGTGACTTCCCAATTGCCCTTGAGCATGATTCGAAAGGAAACAAAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000337019.7
ENST00000366888.6
ENST00000366889.6
ENST00000541974.5
ENST00000542669.1
ENST00000544266.1
CDS GCA 72 bp GCATTATTCTGCTATTCATTGGAAGACATGATTCGCTaGCGTCTGTCAGTAGTTTTCATCTGTTACTTAAGG +
Preference number: 6 (lower is better)
Translates to: ALFCYSLEDMIR*RLSVVFICYLR
Trigger: CCTTAAGTAACAGATGAAAACTACTGACAGACGGCAGCGAATCATGTCTTCCAATGAATAGCAGAATAATGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541974.5
CDS CAA 90 bp CTTGACATTGAATTTTTCCAATTTCCAGCATTATTCTGCTATTCATaGGAAGACATGATTCGCTGCCGTCTGTCAGTAGTTTTCATCTGT +
Preference number: 6 (lower is better)
Translates to: LDIEFFQFPALFCYS*EDMIRCRLSVVFIC
Trigger: ACAGATGAAAACTACTGACAGACGGCAGCGAATCATGTCTTCCAATGAATAGCAGAATAATGCTGGAAATTGGAAAAATTCAATGTCAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000541974.5