Pregenerated sensors for PABPN1 (Homo sapiens)
Ensembl gene IDs: ENSG00000100836Ensembl transcript IDs: ENST00000397276.6, ENST00000553960.1, ENST00000554062.5, ENST00000556809.1, ENST00000556821.5, ENST00000557702.5
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACCAATTTCTACTGCAGAAAAGATGATGAGGCTGGCCTTCTGGCCTaGCCTGCAACTACCTTCCTCAACCTGCACAGGCAGGAGACAAAG | + |
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Preference number: 1 (lower is better) Translates to: TNFYCRKDDEAGLLA*PATTFLNLHRQETK Trigger: CTTTGTCTCCTGCCTGTGCAGGTTGAGGAAGGTAGTTGCAGGCCAGGCCAGAAGGCCAGCCTCATCATCTTTTCTGCAGTAGAAATTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| 3UTR CCA 90 bp | TTATCACCAATTTCTACTGCAGAAAAGATGATGAGGCTGGCCTTCTaGCCTGGCCTGCAACTACCTTCCTCAACCTGCACAGGCAGGAGA | + |
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Preference number: 1 (lower is better) Translates to: LSPISTAEKMMRLAF*PGLQLPSSTCTGRR Trigger: TCTCCTGCCTGTGCAGGTTGAGGAAGGTAGTTGCAGGCCAGGCCAGAAGGCCAGCCTCATCATCTTTTCTGCAGTAGAAATTGGTGATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| 3UTR CCA 90 bp | AAATCCTCCCACAAGGCTGTTGGGGAGGATCAACTAGCTAGCCTCTaGTATTCTTCCAAGGGAGGTTCAGTCTTCAATCCCTCCCTAACT | + |
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Preference number: 1 (lower is better) Translates to: KSSHKAVGEDQLASL*YSSKGGSVFNPSLT Trigger: AGTTAGGGAGGGATTGAAGACTGAACCTCCCTTGGAAGAATACCAGAGGCTAGCTAGTTGATCCTCCCCAACAGCCTTGTGGGAGGATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| 3UTR-3UTR TCA 90 bp | GGGAGGGATGCAGCCCTTATCACCAATTTCTACTGCAGAAAAGATGATGAGGCTAGGAGACAAAGTTCCTaGAGACCACGGGGAGGGGTG | + |
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Preference number: 2 (lower is better) Translates to: GRDAALITNFYCRKDDEARRQSS*RPRGGV Trigger: CACCCCTCCCCGTGGTCTTCAGGAACTTTGTCTCCT...AGCCTCATCATCTTTTCTGCAGTAGAAATTGGTGATAAGGGCTGCATCCCTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| 3UTR-3UTR GCA 90 bp | TCCTCCCACAAGGCTGTTGGGGAGGATCAACTAGCTAGCCTCTGGTATTCTTCCCTACCTTCCTCAACCTaGACAGGCAGGAGACAAAGT | + |
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Preference number: 2 (lower is better) Translates to: SSHKAVGEDQLASLWYSSLPSST*TGRRQS Trigger: ACTTTGTCTCCTGCCTGTGCAGGTTGAGGAAGGTAG...GGAAGAATACCAGAGGCTAGCTAGTTGATCCTCCCCAACAGCCTTGTGGGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| 3UTR-3UTR GCA 90 bp | TCCTCCCACAAGGCTGTTGGGGAGGATCAACTAGCTAGCCTCTGGTATTCTTCCGAACCAAGGGAGGGATaGAGCCCTTATCACCAATTT | + |
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Preference number: 2 (lower is better) Translates to: SSHKAVGEDQLASLWYSSEPREG*SPYHQF Trigger: AAATTGGTGATAAGGGCTGCATCCCTCCCTTGGTTC...GGAAGAATACCAGAGGCTAGCTAGTTGATCCTCCCCAACAGCCTTGTGGGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| 3UTR CCA 72 bp | CACAAGGCTGTTGGGGAGGATCAACTAGCTAGCCTCTaGTATTCTTCCAAGGGAGGTTCAGTCTTCAATCCC | + |
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Preference number: 3 (lower is better) Translates to: HKAVGEDQLASL*YSSKGGSVFNP Trigger: GGGATTGAAGACTGAACCTCCCTTGGAAGAATACCAGAGGCTAGCTAGTTGATCCTCCCCAACAGCCTTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| 3UTR-3UTR CAA 90 bp | CTAACCCGTCTATTTAAATGTAGAGACAGAAGTGAAGCAAGGCAAAAACCTGGGGGGGTGGAAGCCTCTTaGAACCAAGGGAGGGATGCA | + |
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Preference number: 3 (lower is better) Translates to: LTRLFKCRDRSEARQKPGGVEAS*NQGRDA Trigger: TGCATCCCTCCCTTGGTTCAAAGAGGCTTCCACCCC...CCCAGGTTTTTGCCTTGCTTCACTTCTGTCTCTACATTTAAATAGACGGGTTAG 49% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS-3UTR GCA 90 bp | GGGAGGGAGGTTCCTCAGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGGCAGGGGCTGTGCCCTaGTCTCGGCCAGAGCGCGGC | + |
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Preference number: 4 (lower is better) Translates to: GREVPQTREEEAYGAHGRAGAVP*SRPERG Trigger: GCCGCGCTCTGGCCGAGAGCAGGGCACAGCCCCTGC...CCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCTGAGGAACCTCCCTCCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000557702.5 |
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| CDS-3UTR GCA 90 bp | CCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGGGGGAAAGAGGAGCAGCGCGCGGCCTCAGCCATaGTCGGCCATTTCCCTCGCC | + |
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Preference number: 4 (lower is better) Translates to: PERRKHTGLTGGGGKRSSARPQP*SAISLA Trigger: GGCGAGGGAAATGGCCGAGCATGGCTGAGGCCGCGC...GCTGCTCCTCTTTCCCCCGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000557702.5 |
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| CDS-3UTR GCA 90 bp | AGGGAGGTTCCTCAGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGGCCAACGCAGGGGCTGTaGCCTGCTCTCGGCCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: REVPQTREEEAYGAHGRRPTQGL*PALGQS Trigger: GCTCTGGCCGAGAGCAGGGCACAGCCCCTGCGTTGG...CCGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCTGAGGAACCTCCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000557702.5 |
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| CDS-3UTR TCA 90 bp | AGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGGGGGAAAGAGGAGCGCAGCCCATCTATCCTaGCCTGTAGACGCGACCCCG | + |
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Preference number: 4 (lower is better) Translates to: RPERRKHTGLTGGGGKRSAAHLS*PVDATP Trigger: CGGGGTCGCGTCTACAGGTCAGGATAGATGGGCTGC...GCTCCTCTTTCCCCCGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000397276.6 ENST00000557702.5 |
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| CDS-3UTR GCA 90 bp | CCTCAGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGGGGGAAAGAGCTCCCCGTAGGCCCCTaGCCCAGTTACTGTGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: PQTREEEAYGAHGRRGKELPVGP*PSYCEG Trigger: CCCTTCACAGTAACTGGGGCAGGGGCCTACGGGGAG...CTCTTTCCCCCGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCTGAGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS-3UTR TCA 90 bp | GTTCCTCAGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGGGGGAAAGCAGCCCATCTATCCTaGCCTGTAGACGCGACCCCG | + |
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Preference number: 4 (lower is better) Translates to: VPQTREEEAYGAHGRRGKAAHLS*PVDATP Trigger: CGGGGTCGCGTCTACAGGTCAGGATAGATGGGCTGC...TTTCCCCCGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCTGAGGAAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000397276.6 ENST00000557702.5 |
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| CDS-3UTR CCA 90 bp | GAGGGAGGTTCCTCAGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGAGTGCTTTCACTGCCTaGAGGCCCTGTTCCTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: EGGSSDQRGGSIRGSREASAFTA*RPCSSQ Trigger: CTGGGAGGAACAGGGCCTCCAGGCAGTGAAAGCACT...CGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCTGAGGAACCTCCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS-3UTR TCA 90 bp | TCAGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGGGGGAAAGAGGAGGGTGGAAGCCTCTTTaGACCAAGGGAGGGATGCAG | + |
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Preference number: 4 (lower is better) Translates to: SDQRGGSIRGSREAGERGGWKPL*TKGGMQ Trigger: CTGCATCCCTCCCTTGGTTCAAAGAGGCTTCCACCC...TCCTCTTTCCCCCGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCTGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS-3UTR GCA 90 bp | AGGTTCCTCAGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGGGGGACCTTCTGGCCTGGCCTaGAACTACCTTCCTCAACCT | + |
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Preference number: 4 (lower is better) Translates to: RFLRPERRKHTGLTGGGGPSGLA*NYLPQP Trigger: AGGTTGAGGAAGGTAGTTGCAGGCCAGGCCAGAAGG...TCCCCCGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCTGAGGAACCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS-3UTR GCA 90 bp | AGGGAGGTTCCTCAGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGGAAGCAGTGCTTTCACTaGCTGGAGGCCCTGTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: REVPQTREEEAYGAHGRRKQCFH*LEALFL Trigger: GAGGAACAGGGCCTCCAGGCAGTGAAAGCACTGCTT...CCGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCTGAGGAACCTCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS-3UTR GCA 90 bp | GGAGGTTCCTCAGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGGGGCTACCTTCCTCAACCTaGACAGGCAGGAGACAAAGT | + |
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Preference number: 4 (lower is better) Translates to: GGSSDQRGGSIRGSREAGLPSST*TGRRQS Trigger: ACTTTGTCTCCTGCCTGTGCAGGTTGAGGAAGGTAG...CCCCGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCTGAGGAACCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS-3UTR TCA 90 bp | AGGGAGGTTCCTCAGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGGAAAAAGAAGCGCATCTaGGTGAGAGACAGGGGCAAG | + |
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Preference number: 4 (lower is better) Translates to: REVPQTREEEAYGAHGRRKKKRI*VRDRGK Trigger: CTTGCCCCTGTCTCTCACTCAGATGCGCTTCTTTTT...CCGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCTGAGGAACCTCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS-3UTR GCA 90 bp | AGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGGGGGAAAGAGGAGCATTTCCCTCGCCCCATaGGAGGGTCGTGATAAAAGA | + |
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Preference number: 4 (lower is better) Translates to: RPERRKHTGLTGGGGKRSISLAP*EGRDKR Trigger: TCTTTTATCACGACCCTCGCATGGGGCGAGGGAAAT...GCTCCTCTTTCCCCCGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000557702.5 |
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| CDS-3UTR GCA 90 bp | CTCAGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGGGGGAAAGAGGGAACCAAGGGAGGGATaGAGCCCTTATCACCAATTT | + |
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Preference number: 4 (lower is better) Translates to: LRPERRKHTGLTGGGGKREPREG*SPYHQF Trigger: AAATTGGTGATAAGGGCTGCATCCCTCCCTTGGTTC...CCTCTTTCCCCCGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCTGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS-3UTR CCA 90 bp | ACCAAGGGAGGGATGCAGCCCTTATCACCAATTTCTACTGCAGAAAAGATGATGGCTCCGGGTCCTCAATaGCGCCGTCCCCCGGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: TKGGMQPLSPISTAEKMMAPGPQ*RRPPGH Trigger: GTGACCCGGGGGACGGCGCCATTGAGGACCCGGAGC...CATCATCTTTTCTGCAGTAGAAATTGGTGATAAGGGCTGCATCCCTCCCTTGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS-3UTR TCA 90 bp | TCCTCCCACAAGGCTGTTGGGGAGGATCAACTAGCTAGCCTCTGGTATTCTTCCAGGAGACAAAGTTCCTaGAGACCACGGGGAGGGGTG | + |
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Preference number: 4 (lower is better) Translates to: SSHKAVGEDQLASLWYSSRRQSS*RPRGGV Trigger: CACCCCTCCCCGTGGTCTTCAGGAACTTTGTCTCCT...GGAAGAATACCAGAGGCTAGCTAGTTGATCCTCCCCAACAGCCTTGTGGGAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS-3UTR GCA 90 bp | GACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGGGGGAAAGAGGAGCAGCAAACACCTTCAAATaGCACCAACTCCCAAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: DQRGGSIRGSREAGERGAANTFK*HQLPRK Trigger: TTTTCTTGGGAGTTGGTGGCATTTGAAGGTGTTTGC...TGCTCCTCTTTCCCCCGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS-3UTR GCA 90 bp | GCTGGGGGTGGAAGCCTCTTTGAACCAAGGGAGGGATGCAGCCCTTATCACCAACAAATGTCCAAGCAGTaGTTTCACTGCCTGGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: AGGGSLFEPREGCSPYHQQMSKQ*FHCLEA Trigger: GGCCTCCAGGCAGTGAAAGCACTGCTTGGACATTTG...TTGGTGATAAGGGCTGCATCCCTCCCTTGGTTCAAAGAGGCTTCCACCCCCAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS-3UTR GCA 90 bp | AGGTTCCTCAGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGGGGGAAAGCCAAGGTTTATATaGCTAACCCGTCTATTTAAA | + |
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Preference number: 4 (lower is better) Translates to: RFLRPERRKHTGLTGGGGKPRFI*LTRLFK Trigger: TTTAAATAGACGGGTTAGGCATATAAACCTTGGCTT...TCCCCCGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCTGAGGAACCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS-3UTR CCA 90 bp | AACTACCTTCCTCAACCTGCACAGGCAGGAGACAAAGTTCCTGAAGACCACGGGCAACTAGCTAGCCTCTaGTATTCTTCCAAGGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: NYLPQPAQAGDKVPEDHGQLASL*YSSKGG Trigger: ACCTCCCTTGGAAGAATACCAGAGGCTAGCTAGTTG...CCCGTGGTCTTCAGGAACTTTGTCTCCTGCCTGTGCAGGTTGAGGAAGGTAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS GCA 90 bp | GGTATGGAGGACAGCTTAAGAGGAACCAACGCAGGGGCTGTGCCCTaGTCTCGGCCAGAGCGCGGCCTCAGCCATGCTCGGCCATTTCCC | + |
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Preference number: 5 (lower is better) Translates to: GMEDSLRGTNAGAVP*SRPERGLSHARPFP Trigger: GGGAAATGGCCGAGCATGGCTGAGGCCGCGCTCTGGCCGAGAGCAGGGCACAGCCCCTGCGTTGGTTCCTCTTAAGCTGTCCTCCATACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000556809.1 ENST00000556821.5 ENST00000557702.5 |
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| CDS-3UTR CAA 90 bp | GGGGAGGGAGGTTCCTCAGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGATCACCGGGCCAGCATaGCCTGGAGGTGGACTCATA | + |
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Preference number: 5 (lower is better) Translates to: GEGGSSDQRGGSIRGSREITGPA*PGGGLI Trigger: TATGAGTCCACCTCCAGGCAATGCTGGCCCGGTGAT...CTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCTGAGGAACCTCCCTCCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000397276.6 ENST00000557702.5 |
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| CDS-3UTR CAA 90 bp | ACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGCGGGGGAAAGAGGAGCAGATCACCGGGCCAGCATaGCCTGGAGGTGGACTCATA | + |
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Preference number: 5 (lower is better) Translates to: TREEEAYGAHGRRGKEEQITGPA*PGGGLI Trigger: TATGAGTCCACCTCCAGGCAATGCTGGCCCGGTGAT...CTGCTCCTCTTTCCCCCGCCTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000397276.6 ENST00000557702.5 |
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| CDS-3UTR CAA 90 bp | GGGGAGGGAGGTTCCTCAGACCAGAGAGGAGGAAGCATACGGGGCTCACGGGAGGGGGTGGAAGCCTCTTaGAACCAAGGGAGGGATGCA | + |
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Preference number: 5 (lower is better) Translates to: GEGGSSDQRGGSIRGSREGVEAS*NQGRDA Trigger: TGCATCCCTCCCTTGGTTCAAAGAGGCTTCCACCCC...CTCCCGTGAGCCCCGTATGCTTCCTCCTCTCTGGTCTGAGGAACCTCCCTCCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000397276.6 |
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| CDS GCA 72 bp | GACAGCTTAAGAGGAACCAACGCAGGGGCTGTGCCCTaGTCTCGGCCAGAGCGCGGCCTCAGCCATGCTCGG | + |
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Preference number: 6 (lower is better) Translates to: DSLRGTNAGAVP*SRPERGLSHAR Trigger: CCGAGCATGGCTGAGGCCGCGCTCTGGCCGAGAGCAGGGCACAGCCCCTGCGTTGGTTCCTCTTAAGCTGTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000556809.1 ENST00000556821.5 ENST00000557702.5 |
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| CDS CCA 72 bp | CAAATTCCTGTCTCAAAAGGAACCCTCCCGAGCCTTTaGTCTGGGCCATCATACACCAAAGCACATGAAATC | + |
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Preference number: 6 (lower is better) Translates to: QIPVSKGTLPSL*SGPSYTKAHEI Trigger: GATTTCATGTGCTTTGGTGTATGATGGCCCAGACCAAAGGCTCGGGAGGGTTCCTTTTGAGACAGGAATTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553960.1 ENST00000556809.1 |
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| CDS GCA 72 bp | TCACCGGGCCAGTTAAAACAGTATAGGAATCCCTCCTaGCTCCAAATCAAATCCCTAATGAATGGCTTTGGT | + |
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Preference number: 6 (lower is better) Translates to: SPGQLKQYRNPS*LQIKSLMNGFG Trigger: ACCAAAGCCATTCATTAGGGATTTGATTTGGAGGCAGGAGGGATTCCTATACTGTTTTAACTGGCCCGGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554062.5 |
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| CDS CAA 72 bp | CTAAAGCGTCTCCAATTGGAGGAAAAACTATTAGATTaGAAGGTCAAATGCGAGCACGCAACCTCTACAAAG | + |
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Preference number: 6 (lower is better) Translates to: LKRLQLEEKLLD*KVKCEHATSTK Trigger: CTTTGTAGAGGTTGCGTGCTCGCATTTGACCTTCAAATCTAATAGTTTTTCCTCCAATTGGAGACGCTTTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554062.5 |
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| CDS CAA 90 bp | CTTAGAATCCTAAAGCGTCTCCAATTGGAGGAAAAACTATTAGATTaGAAGGTCAAATGCGAGCACGCAACCTCTACAAAGAAAGATAGA | + |
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Preference number: 6 (lower is better) Translates to: LRILKRLQLEEKLLD*KVKCEHATSTKKDR Trigger: TCTATCTTTCTTTGTAGAGGTTGCGTGCTCGCATTTGACCTTCAAATCTAATAGTTTTTCCTCCAATTGGAGACGCTTTAGGATTCTAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554062.5 |
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