Pregenerated sensors for PABPC1L2A (Homo sapiens)
Ensembl gene IDs: ENSG00000186288Ensembl transcript IDs: ENST00000373519.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGCAAGTCCGCAGTTAAGGAGACCACCGGGATGCTAGCAAAGATTTaGCTTGACAAGGAAGGATTCACTCATCAAAGCACAGAGCACGCA | + |
|
Preference number: 1 (lower is better) Translates to: CKSAVKETTGMLAKI*LDKEGFTHQSTEHA Trigger: TGCGTGCTCTGTGCTTTGATGAGTGAATCCTTCCTTGTCAAGCCAAATCTTTGCTAGCATCCCGGTGGTCTCCTTAACTGCGGACTTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373519.1 |
||
| 3UTR TCA 90 bp | CACGCAATGTTGGTCTTAAACACAGGGAAAGAACTAGGCACCACCTaGATGTCCAACAATGCGGGAATGATTACAGAAATGTTAAGGTCC | + |
|
Preference number: 1 (lower is better) Translates to: HAMLVLNTGKELGTT*MSNNAGMITEMLRS Trigger: GGACCTTAACATTTCTGTAATCATTCCCGCATTGTTGGACATTCAGGTGGTGCCTAGTTCTTTCCCTGTGTTTAAGACCAACATTGCGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373519.1 |
||
| 3UTR-3UTR CAA 90 bp | ACACACACACACACACACGCACGCACACACACGATCAATTACAGTGACCAGGAGCGTTTCATAAGCCTGTaGATAACATGGAAAGAAGTT | + |
|
Preference number: 3 (lower is better) Translates to: THTHTHARTHTINYSDQERFISL*ITWKEV Trigger: AACTTCTTTCCATGTTATCAACAGGCTTATGAAACG...CTCCTGGTCACTGTAATTGATCGTGTGTGTGCGTGCGTGTGTGTGTGTGTGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373519.1 |
||
| 3UTR TCA 72 bp | TTGGTCTTAAACACAGGGAAAGAACTAGGCACCACCTaGATGTCCAACAATGCGGGAATGATTACAGAAATG | + |
|
Preference number: 3 (lower is better) Translates to: LVLNTGKELGTT*MSNNAGMITEM Trigger: CATTTCTGTAATCATTCCCGCATTGTTGGACATTCAGGTGGTGCCTAGTTCTTTCCCTGTGTTTAAGACCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373519.1 |
||
| CDS-3UTR CCA 90 bp | GGTTCTCTCTGGGGAGTAGGACCAGGGGAGCAATTACTCTCTTGTTTCTTCCCTTGTAGCCCGCCAAGCTaGCCAAGACACACACACACA | + |
|
Preference number: 4 (lower is better) Translates to: GSLWGVGPGEQLLSCFFPCSPPS*PRHTHT Trigger: TGTGTGTGTGTGTCTTGGCCAGCTTGGCGGGCTACA...AGGGAAGAAACAAGAGAGTAATTGCTCCCCTGGTCCTACTCCCCAGAGAGAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373519.1 |
||
| CDS-3UTR GCA 90 bp | ACACACACACACACACACGCACGCACACACACGATCAATTACAGTGACCAGGAGGTGACCAGGAGACTATaGAGGGGAAACGGGCATACT | + |
|
Preference number: 4 (lower is better) Translates to: THTHTHARTHTINYSDQEVTRRL*RGNGHT Trigger: AGTATGCCCGTTTCCCCTGCATAGTCTCCTGGTCAC...CTCCTGGTCACTGTAATTGATCGTGTGTGTGCGTGCGTGTGTGTGTGTGTGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373519.1 |
||
| CDS-3UTR TCA 90 bp | GGTTCTCTCTGGGGAGTAGGACCAGGGGAGCAATTACTCTCTTGTTTCTTCCCTAGCAAAGATTTGGCTTaGCAAGGAAGGATTCACTCA | + |
|
Preference number: 4 (lower is better) Translates to: GSLWGVGPGEQLLSCFFPSKDLA*QGRIHS Trigger: TGAGTGAATCCTTCCTTGTCAAGCCAAATCTTTGCT...AGGGAAGAAACAAGAGAGTAATTGCTCCCCTGGTCCTACTCCCCAGAGAGAACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373519.1 |
||
| CDS-3UTR GCA 90 bp | TTCTCTCTGGGGAGTAGGACCAGGGGAGCAATTACTCTCTTGTTTCTTCCCTCAAATATCAGAGAGGTGTaGATGAAAATGTTTCTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: FSLGSRTRGAITLLFLPSNIREV*MKMFLE Trigger: TTCCAGAAACATTTTCATGCACACCTCTCTGATATT...TGAGGGAAGAAACAAGAGAGTAATTGCTCCCCTGGTCCTACTCCCCAGAGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000373519.1 |
||
| CDS-3UTR CAA 90 bp | TTCTCTCTGGGGAGTAGGACCAGGGGAGCAATTACTCTCTTGTTTCTTCCCTCAGGTCATAAGCAGTGTTaGTTTCCAGCAAAACTACCG | + |
|
Preference number: 5 (lower is better) Translates to: FSLGSRTRGAITLLFLPSGHKQC*FPAKLP Trigger: CGGTAGTTTTGCTGGAAACAAACACTGCTTATGACC...TGAGGGAAGAAACAAGAGAGTAATTGCTCCCCTGGTCCTACTCCCCAGAGAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000373519.1 |
||
| CDS-3UTR CAA 90 bp | GAAAAGTCTTTAAAATGTCTATATGTGGATCTTGCAAGTCCGCAGTTAAGGAGACGTTTCATAAGCCTGTaGATAACATGGAAAGAAGTT | + |
|
Preference number: 5 (lower is better) Translates to: EKSLKCLYVDLASPQLRRRFISL*ITWKEV Trigger: AACTTCTTTCCATGTTATCAACAGGCTTATGAAACG...TCTCCTTAACTGCGGACTTGCAAGATCCACATATAGACATTTTAAAGACTTTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373519.1 |
||