Pregenerated sensors for OTUD4 (Homo sapiens)
Ensembl gene IDs: ENSG00000164164Ensembl transcript IDs: ENST00000447906.8, ENST00000454497.6, ENST00000455611.6, ENST00000504331.1, ENST00000504501.1, ENST00000509620.6, ENST00000514973.5
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CATCTAGATTGCAGACGTAAATTCTCATCAACCAAAAACACCAACTTTCAAAACGATTTCATTCTTACTTaGAACTGTCATCCTCTGAAT | + |
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Preference number: 4 (lower is better) Translates to: HLDCRRKFSSTKNTNFQNDFILT*NCHPLN Trigger: ATTCAGAGGATGACAGTTGCAAGTAAGAATGAAATC...GTTTTGAAAGTTGGTGTTTTTGGTTGATGAGAATTTACGTCTGCAATCTAGATG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000509620.6 |
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| CDS TCA 90 bp | GTGCAATACCTACTAACAATAAGGACCGGAGGCAGTGGGTGGCTGTaGACATACCCCACAGCAACACTCTTCATCAGGAGAGAGACACCC | + |
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Preference number: 5 (lower is better) Translates to: VQYLLTIRTGGSGWL*TYPTATLFIRRETP Trigger: GGGTGTCTCTCTCCTGATGAAGAGTGTTGCTGTGGGGTATGTTCACAGCCACCCACTGCCTCCGGTCCTTATTGTTAGTAGGTATTGCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504501.1 |
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| CDS GCA 90 bp | GAGAGTGCAATACCTCTTCATCAGGAGAGAGACACCCCGTTAATTTaGGGGCTTTCGAGTTTCAATTTGCACCTTTCAGACGCAAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: ESAIPLHQERDTPLI*GLSSFNLHLSDAKQ Trigger: CTGCTTTGCGTCTGAAAGGTGCAAATTGAAACTCGAAAGCCCGCAAATTAACGGGGTGTCTCTCTCCTGATGAAGAGGTATTGCACTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000454497.6 ENST00000514973.5 |
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| CDS GCA 90 bp | CTTCACGAGATGATCATGGAAATAGGAACCTGCATGAAAGAACTCTaGCTTCTCAGTTGCCTAGGAAGAAAAACTCTGCAGGCCAGGTGT | + |
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Preference number: 5 (lower is better) Translates to: LHEMIMEIGTCMKEL*LLSCLGRKTLQARC Trigger: ACACCTGGCCTGCAGAGTTTTTCTTCCTAGGCAACTGAGAAGGCAGAGTTCTTTCATGCAGGTTCCTATTTCCATGATCATCTCGTGAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504331.1 |
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| CDS-3UTR CAA 90 bp | CATCTAGATTGCAGACGTAAATTCTCATCAACCAAAAACACCAACTTTCAAAACGGATTTCATTCTTACTaGCAACTGTCATCCTCTGAA | + |
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Preference number: 5 (lower is better) Translates to: HLDCRRKFSSTKNTNFQNGFHSY*QLSSSE Trigger: TTCAGAGGATGACAGTTGCAAGTAAGAATGAAATCC...GTTTTGAAAGTTGGTGTTTTTGGTTGATGAGAATTTACGTCTGCAATCTAGATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000509620.6 |
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| CDS CAA 72 bp | GCGCCCGGGAGAGAACAGCACCTCGCAGCCCAGAATTaGTTTTCGCTTTCGGCCCGACAGCGGAGAGGACGG | + |
|
Preference number: 6 (lower is better) Translates to: APGREQHLAAQN*FSLSARQRRGR Trigger: CCGTCCTCTCCGCTGTCGGGCCGAAAGCGAAAACAAATTCTGGGCTGCGAGGTGCTGTTCTCTCCCGGGCGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447906.8 |
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| CDS CAA 72 bp | GACACCCCGTTAATTTGCGGGCTTTCGAGTTTCAATTaGCACCTTTCAGACGCAAAGCAGCGTCCCACTCCG | + |
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Preference number: 6 (lower is better) Translates to: DTPLICGLSSFN*HLSDAKQRPTP Trigger: CGGAGTGGGACGCTGCTTTGCGTCTGAAAGGTGCAAATTGAAACTCGAAAGCCCGCAAATTAACGGGGTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000454497.6 ENST00000514973.5 |
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| CDS CAA 90 bp | CAGGAGAGAGACACCCCGTTAATTTGCGGGCTTTCGAGTTTCAATTaGCACCTTTCAGACGCAAAGCAGCGTCCCACTCCGGCGTTACAA | + |
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Preference number: 6 (lower is better) Translates to: QERDTPLICGLSSFN*HLSDAKQRPTPALQ Trigger: TTGTAACGCCGGAGTGGGACGCTGCTTTGCGTCTGAAAGGTGCAAATTGAAACTCGAAAGCCCGCAAATTAACGGGGTGTCTCTCTCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000454497.6 ENST00000514973.5 |
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| CDS CAA 72 bp | AATAGGAACCTGCATGAAAGAACTCTGCCTTCTCAGTaGCCTAGGAAGAAAAACTCTGCAGGCCAGGTGTGG | + |
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Preference number: 6 (lower is better) Translates to: NRNLHERTLPSQ*PRKKNSAGQVW Trigger: CCACACCTGGCCTGCAGAGTTTTTCTTCCTAGGCAACTGAGAAGGCAGAGTTCTTTCATGCAGGTTCCTATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504331.1 |
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| CDS GCA 72 bp | ATACCTCTTCATCAGGAGAGAGACACCCCGTTAATTTaGGGGCTTTCGAGTTTCAATTTGCACCTTTCAGAC | + |
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Preference number: 6 (lower is better) Translates to: IPLHQERDTPLI*GLSSFNLHLSD Trigger: GTCTGAAAGGTGCAAATTGAAACTCGAAAGCCCGCAAATTAACGGGGTGTCTCTCTCCTGATGAAGAGGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000454497.6 ENST00000514973.5 |
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| CDS CAA 72 bp | AATACCTCTTCATCAGGAGAGAGACACCCCGTTAATTaGCGGGCTTTCGAGTTTCAATTTGCACCTTTCAGA | + |
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Preference number: 6 (lower is better) Translates to: NTSSSGERHPVN*RAFEFQFAPFR Trigger: TCTGAAAGGTGCAAATTGAAACTCGAAAGCCCGCAAATTAACGGGGTGTCTCTCTCCTGATGAAGAGGTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000454497.6 ENST00000514973.5 |
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| CDS TCA 72 bp | ATGATGACATGCAGTATACTTTTTACCTGGAAGAGGTaGAATACATTGAGCACAATGCCTCTATGTTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: MMTCSILFTWKR*NTLSTMPLCSL Trigger: CAAAGAACATAGAGGCATTGTGCTCAATGTATTTCACCTCTTCCAGGTAAAAAGTATACTGCATGTCATCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000455611.6 |
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