Pregenerated sensors for OTOS (Homo sapiens)
Ensembl gene IDs: ENSG00000178602Ensembl transcript IDs: ENST00000319460.2, ENST00000391989.6
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TGCATCTTCAGTCCGGAGTTTATTGAGCGTGAGACCAGGCCTGACTCCTGCAGGTTTGCGGGGACTCCATaGCTGTGGAGGCCCGACCGA | + |
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Preference number: 2 (lower is better) Translates to: CIFSPEFIERETRPDSCRFAGTP*LWRPDR Trigger: TCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAA...CCTGCAGGAGTCAGGCCTGGTCTCACGCTCAATAAACTCCGGACTGAAGATGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | GGGCCAGGTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCCGTGGAAGCCCAGCGTaGTCCCCAGGGGGAAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: GPGFCGDSMPVEARPSAARGSPA*SPGGSG Trigger: CCCACTTCCCCCTGGGGAGCACGCTGGGCTTCCACG...GGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAACCTGGCCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | GGGCCAGGTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCCTCAGCCAGCCGTGCTaGCTGGATGGGCTCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: GPGFCGDSMPVEARPSAALSQPC*LDGLCC Trigger: GCAGCAGAGCCCATCCAGGCAGCACGGCTGGCTGAG...GGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAACCTGGCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000391989.6 |
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| CDS-3UTR TCA 90 bp | GTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCTGGCGGGCTTCCCGGTGCTTCCTaGTCTGCGACTCAGGCCCAC | + |
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Preference number: 4 (lower is better) Translates to: VFAGTPCLWRPDRVQPGGLPGAS*SATQAH Trigger: GTGGGCCTGAGTCGCAGATCAGGAAGCACCGGGAAG...CCCGCCAGGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | GCCAGGTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCTGGGCAGCCCTTGTCTCTaGTCAGCCAGCCGTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: ARFLRGLHACGGPTECSLGSPCL*SASRAA Trigger: GGCAGCACGGCTGGCTGAGCAGAGACAAGGGCTGCC...CAGGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAACCTGGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | GGGCCAGGTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCGGGTCTCCTTCCTCCTaGACAGGCTTGGCCCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: GPGFCGDSMPVEARPSAAGSPSS*TGLAPA Trigger: TGCAGGGGCCAAGCCTGTGCAGGAGGAAGGAGACCC...GGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAACCTGGCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | GTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCTGGCGGGAGAAGGGCCCTCGGCTaGCAGGGAGGCTTCTGGCAA | + |
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Preference number: 4 (lower is better) Translates to: VFAGTPCLWRPDRVQPGGRRALG*QGGFWQ Trigger: TTGCCAGAAGCCTCCCTGGCAGCCGAGGGCCCTTCT...CCCGCCAGGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | GCCAGGTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCTGCTGCTCAGCCAGCCGTaGTGCCTGGATGGGCTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: ARFLRGLHACGGPTECSLLLSQP*CLDGLC Trigger: GCAGAGCCCATCCAGGCAGCACGGCTGGCTGAGCAG...CAGGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAACCTGGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000391989.6 |
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| CDS-3UTR CCA 90 bp | GTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCTGGCGGGAAGGCCAGTAGGGCATaGCCGGCAGCTCCGCGTAAG | + |
|
Preference number: 4 (lower is better) Translates to: VFAGTPCLWRPDRVQPGGKASRA*PAAPRK Trigger: CTTACGCGGAGCTGCCGGCCATGCCCTACTGGCCTT...CCCGCCAGGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR CCA 90 bp | GTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCTGGCGGGGCCGTGCTGCCTGGATaGGCTCTGCTGCCAGCTCAA | + |
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Preference number: 4 (lower is better) Translates to: VFAGTPCLWRPDRVQPGGAVLPG*ALLPAQ Trigger: TTGAGCTGGCAGCAGAGCCCATCCAGGCAGCACGGC...CCCGCCAGGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000391989.6 |
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| CDS-3UTR TCA 90 bp | GCCAGGTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCTGCTTCCCGGTGCTTCCTaGTCTGCGACTCAGGCCCAC | + |
|
Preference number: 4 (lower is better) Translates to: ARFLRGLHACGGPTECSLLPGAS*SATQAH Trigger: GTGGGCCTGAGTCGCAGATCAGGAAGCACCGGGAAG...CAGGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAACCTGGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | GGGCCAGGTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCGGCACCATGCAGGCCTaGATCTTCCCGGTGCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: GPGFCGDSMPVEARPSAAGTMQA*IFPVLP Trigger: AGGAAGCACCGGGAAGATGCAGGCCTGCATGGTGCC...GGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAACCTGGCCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | GGGCCAGGTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCACCAGGCCTGACTCCTaGAGGGGCCAGGTTTTTGCG | + |
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Preference number: 4 (lower is better) Translates to: GPGFCGDSMPVEARPSAATRPDS*RGQVFA Trigger: CGCAAAAACCTGGCCCCTGCAGGAGTCAGGCCTGGT...GGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAACCTGGCCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | GCCAGGTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCTGCGACTCAGGCCCACCTaGAGCAGGATGAACCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: ARFLRGLHACGGPTECSLRLRPT*SRMNPG Trigger: TCCTGGGTTCATCCTGCTGCAGGTGGGCCTGAGTCG...CAGGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAACCTGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | GCCAGGTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCTGACCAGGCCTGACTCCTaGAGGGGCCAGGTTTTTGCG | + |
|
Preference number: 4 (lower is better) Translates to: ARFLRGLHACGGPTECSLTRPDS*RGQVFA Trigger: CGCAAAAACCTGGCCCCTGCAGGAGTCAGGCCTGGT...CAGGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAACCTGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR CCA 90 bp | GGGCCAGGTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCCTACCAGTCCCAGTGTaGGCAGCCCTTGTCTCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: GPGFCGDSMPVEARPSAALPVPV*AALVSA Trigger: AGCAGAGACAAGGGCTGCCCACACTGGGACTGGTAG...GGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAACCTGGCCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR CCA 90 bp | GTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCTGGCGGGCTACCAGTCCCAGTGTaGGCAGCCCTTGTCTCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: VFAGTPCLWRPDRVQPGGLPVPV*AALVSA Trigger: AGCAGAGACAAGGGCTGCCCACACTGGGACTGGTAG...CCCGCCAGGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | GGGCCAGGTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCCTGGATGGGCTCTGCTaGCAGCTCAAGAGTCCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: GPGFCGDSMPVEARPSAALDGLC*QLKSPL Trigger: AAGAGGACTCTTGAGCTGGCAGCAGAGCCCATCCAG...GGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAACCTGGCCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | GCCAGGTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCTGTGCCTGGATGGGCTCTaGTGCCAGCTCAAGAGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: ARFLRGLHACGGPTECSLCLDGL*CQLKSP Trigger: AGGACTCTTGAGCTGGCAGCAGAGCCCATCCAGGCA...CAGGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAACCTGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | TGCATCTTCAGTCCGGAGTTTATTGAGCGTGAGACCAGGCCTGACTCCTGCAGGGGCAGCCCTTGTCTCTaGTCAGCCAGCCGTGCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: CIFSPEFIERETRPDSCRGSPCL*SASRAA Trigger: GGCAGCACGGCTGGCTGAGCAGAGACAAGGGCTGCC...CCTGCAGGAGTCAGGCCTGGTCTCACGCTCAATAAACTCCGGACTGAAGATGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | TGTGCATCTTCAGTCCGGAGTTTATTGAGCGTGAGACCAGGCCTGACTCCTGCACGTGGAAGCCCAGCGTaGTCCCCAGGGGGAAGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: CASSVRSLLSVRPGLTPARGSPA*SPGGSG Trigger: CCCACTTCCCCCTGGGGAGCACGCTGGGCTTCCACG...TGCAGGAGTCAGGCCTGGTCTCACGCTCAATAAACTCCGGACTGAAGATGCACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR CCA 90 bp | TGCATCTTCAGTCCGGAGTTTATTGAGCGTGAGACCAGGCCTGACTCCTGCAGGGGGACTCCATGCCTGTaGAGGCCCGACCGAGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: CIFSPEFIERETRPDSCRGTPCL*RPDRVQ Trigger: CTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCC...CCTGCAGGAGTCAGGCCTGGTCTCACGCTCAATAAACTCCGGACTGAAGATGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR CCA 90 bp | TGTGCATCTTCAGTCCGGAGTTTATTGAGCGTGAGACCAGGCCTGACTCCTGCAGCCAGCCGTGCTGCCTaGATGGGCTCTGCTGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: CASSVRSLLSVRPGLTPAASRAA*MGSAAS Trigger: GCTGGCAGCAGAGCCCATCCAGGCAGCACGGCTGGC...TGCAGGAGTCAGGCCTGGTCTCACGCTCAATAAACTCCGGACTGAAGATGCACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | TGCATCTTCAGTCCGGAGTTTATTGAGCGTGAGACCAGGCCTGACTCCTGCAGGGGGTCTCCTTCCTCCTaGACAGGCTTGGCCCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: CIFSPEFIERETRPDSCRGSPSS*TGLAPA Trigger: TGCAGGGGCCAAGCCTGTGCAGGAGGAAGGAGACCC...CCTGCAGGAGTCAGGCCTGGTCTCACGCTCAATAAACTCCGGACTGAAGATGCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR CCA 90 bp | TGCATCTTCAGTCCGGAGTTTATTGAGCGTGAGACCAGGCCTGACTCCTGCAGGCTCCCCAGGGGGAAGTaGGCAAAGAAGGTTCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: CIFSPEFIERETRPDSCRLPRGK*AKKVRA Trigger: GGCCCGAACCTTCTTTGCCCACTTCCCCCTGGGGAG...CCTGCAGGAGTCAGGCCTGGTCTCACGCTCAATAAACTCCGGACTGAAGATGCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | TGTGCATCTTCAGTCCGGAGTTTATTGAGCGTGAGACCAGGCCTGACTCCTGCATTTGCGGGGACTCCATaGCTGTGGAGGCCCGACCGA | + |
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Preference number: 4 (lower is better) Translates to: CASSVRSLLSVRPGLTPAFAGTP*LWRPDR Trigger: TCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAA...TGCAGGAGTCAGGCCTGGTCTCACGCTCAATAAACTCCGGACTGAAGATGCACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR CCA 90 bp | TGTGCATCTTCAGTCCGGAGTTTATTGAGCGTGAGACCAGGCCTGACTCCTGCACTCCCCAGGGGGAAGTaGGCAAAGAAGGTTCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: CASSVRSLLSVRPGLTPALPRGK*AKKVRA Trigger: GGCCCGAACCTTCTTTGCCCACTTCCCCCTGGGGAG...TGCAGGAGTCAGGCCTGGTCTCACGCTCAATAAACTCCGGACTGAAGATGCACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | TGTGCATCTTCAGTCCGGAGTTTATTGAGCGTGAGACCAGGCCTGACTCCTGCACGACTCAGGCCCACCTaGAGCAGGATGAACCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: CASSVRSLLSVRPGLTPARLRPT*SRMNPG Trigger: TCCTGGGTTCATCCTGCTGCAGGTGGGCCTGAGTCG...TGCAGGAGTCAGGCCTGGTCTCACGCTCAATAAACTCCGGACTGAAGATGCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | TGTGCATCTTCAGTCCGGAGTTTATTGAGCGTGAGACCAGGCCTGACTCCTGCACGGTGCTTCCTGATCTaGGACTCAGGCCCACCTGCA | + |
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Preference number: 4 (lower is better) Translates to: CASSVRSLLSVRPGLTPARCFLI*DSGPPA Trigger: TGCAGGTGGGCCTGAGTCGCAGATCAGGAAGCACCG...TGCAGGAGTCAGGCCTGGTCTCACGCTCAATAAACTCCGGACTGAAGATGCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR GCA 90 bp | TGTGCATCTTCAGTCCGGAGTTTATTGAGCGTGAGACCAGGCCTGACTCCTGCAGGCACCATGCAGGCCTaGATCTTCCCGGTGCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: CASSVRSLLSVRPGLTPAGTMQA*IFPVLP Trigger: AGGAAGCACCGGGAAGATGCAGGCCTGCATGGTGCC...TGCAGGAGTCAGGCCTGGTCTCACGCTCAATAAACTCCGGACTGAAGATGCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS GCA 90 bp | GGCCCCAGTAGGAGGCAGAGGGCCAGCCCCGGCACCATGCAGGCCTaGATCTTCCCGGTGCTTCCTGATCTGCGACTCAGGCCCACCTGC | + |
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Preference number: 5 (lower is better) Translates to: GPSRRQRASPGTMQA*IFPVLPDLRLRPTC Trigger: GCAGGTGGGCCTGAGTCGCAGATCAGGAAGCACCGGGAAGATGCAGGCCTGCATGGTGCCGGGGCTGGCCCTCTGCCTCCTACTGGGGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR CAA 90 bp | GTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCTGGCGGGCAGTGTGGGCAGCCCTaGTCTCTGCTCAGCCAGCCG | + |
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Preference number: 5 (lower is better) Translates to: VFAGTPCLWRPDRVQPGGQCGQP*SLLSQP Trigger: CGGCTGGCTGAGCAGAGACAAGGGCTGCCCACACTG...CCCGCCAGGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAAC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR CAA 90 bp | GCCAGGTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCTGTCCTCCTGCACAGGCTaGGCCCCTGCAAGAGGCCCC | + |
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Preference number: 5 (lower is better) Translates to: ARFLRGLHACGGPTECSLSSCTG*APARGP Trigger: GGGGCCTCTTGCAGGGGCCAAGCCTGTGCAGGAGGA...CAGGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAACCTGGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS TCA 90 bp | TCCCGGTGCTTCCTGATCTGCGACTCAGGCCCACCTGCAGCAGGATaGACCCAGGAAGGGCGAGACCACCCATCCGTCAGGGCCGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: SRCFLICDSGPPAAG*TQEGRDHPSVRAGF Trigger: GAAGCCGGCCCTGACGGATGGGTGGTCTCGCCCTTCCTGGGTTCATCCTGCTGCAGGTGGGCCTGAGTCGCAGATCAGGAAGCACCGGGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS GCA 90 bp | GCCTGCATCTTCCCGGTGCTTCCTGATCTGCGACTCAGGCCCACCTaGAGCAGGATGAACCCAGGAAGGGCGAGACCACCCATCCGTCAG | + |
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Preference number: 5 (lower is better) Translates to: ACIFPVLPDLRLRPT*SRMNPGRARPPIRQ Trigger: CTGACGGATGGGTGGTCTCGCCCTTCCTGGGTTCATCCTGCTGCAGGTGGGCCTGAGTCGCAGATCAGGAAGCACCGGGAAGATGCAGGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS GCA 90 bp | CCCTTGTCTCTGCTCAGCCAGCCGTGCTGCCTGGATGGGCTCTGCTaGCAGCTCAAGAGTCCTCTTTATAGAAGGGCCCTCGGCTGCCAG | + |
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Preference number: 5 (lower is better) Translates to: PLSLLSQPCCLDGLC*QLKSPLYRRALGCQ Trigger: CTGGCAGCCGAGGGCCCTTCTATAAAGAGGACTCTTGAGCTGGCAGCAGAGCCCATCCAGGCAGCACGGCTGGCTGAGCAGAGACAAGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000391989.6 |
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| CDS CCA 90 bp | CCCCCAGGGCCTGGAAGTGCTGCACATAGTTCCAGAAGTCAGAGGTaGAGAAAGGCCAGTAGGGCATGGCCGGCAGCTCCGCGTAAGGGT | + |
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Preference number: 5 (lower is better) Translates to: PPGPGSAAHSSRSQR*RKASRAWPAAPRKG Trigger: ACCCTTACGCGGAGCTGCCGGCCATGCCCTACTGGCCTTTCTCCACCTCTGACTTCTGGAACTATGTGCAGCACTTCCAGGCCCTGGGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR CAA 90 bp | GCCAGGTTTTTGCGGGGACTCCATGCCTGTGGAGGCCCGACCGAGTGCAGCCTGTCAGTCCGGAGTTTATaGAGCGTGAGACCAGGCCTG | + |
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Preference number: 5 (lower is better) Translates to: ARFLRGLHACGGPTECSLSVRSL*SVRPGL Trigger: CAGGCCTGGTCTCACGCTCAATAAACTCCGGACTGA...CAGGCTGCACTCGGTCGGGCCTCCACAGGCATGGAGTCCCCGCAAAAACCTGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR CAA 90 bp | TGCATCTTCAGTCCGGAGTTTATTGAGCGTGAGACCAGGCCTGACTCCTGCAGGTCCTCCTGCACAGGCTaGGCCCCTGCAAGAGGCCCC | + |
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Preference number: 5 (lower is better) Translates to: CIFSPEFIERETRPDSCRSSCTG*APARGP Trigger: GGGGCCTCTTGCAGGGGCCAAGCCTGTGCAGGAGGA...CCTGCAGGAGTCAGGCCTGGTCTCACGCTCAATAAACTCCGGACTGAAGATGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS GCA 90 bp | TGGACACCATTCAGTCCTCCTGATAGGGAACGTGGAAGCCCAGCGTaGTCCCCAGGGGGAAGTGGGCAAAGAAGGTTCGGGCCATGTCCT | + |
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Preference number: 5 (lower is better) Translates to: WTPFSPPDRERGSPA*SPGGSGQRRFGPCP Trigger: AGGACATGGCCCGAACCTTCTTTGCCCACTTCCCCCTGGGGAGCACGCTGGGCTTCCACGTTCCCTATCAGGAGGACTGAATGGTGTCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS CCA 90 bp | GCACATAGTTCCAGAAGTCAGAGGTGGAGAAAGGCCAGTAGGGCATaGCCGGCAGCTCCGCGTAAGGGTCTCCTTCCTCCTGCACAGGCT | + |
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Preference number: 5 (lower is better) Translates to: AHSSRSQRWRKASRA*PAAPRKGLLPPAQA Trigger: AGCCTGTGCAGGAGGAAGGAGACCCTTACGCGGAGCTGCCGGCCATGCCCTACTGGCCTTTCTCCACCTCTGACTTCTGGAACTATGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS-3UTR CAA 90 bp | TGTGCATCTTCAGTCCGGAGTTTATTGAGCGTGAGACCAGGCCTGACTCCTGCACAGTGTGGGCAGCCCTaGTCTCTGCTCAGCCAGCCG | + |
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Preference number: 5 (lower is better) Translates to: CASSVRSLLSVRPGLTPAQCGQP*SLLSQP Trigger: CGGCTGGCTGAGCAGAGACAAGGGCTGCCCACACTG...TGCAGGAGTCAGGCCTGGTCTCACGCTCAATAAACTCCGGACTGAAGATGCACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS GCA 72 bp | AGGAGGCAGAGGGCCAGCCCCGGCACCATGCAGGCCTaGATCTTCCCGGTGCTTCCTGATCTGCGACTCAGG | + |
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Preference number: 6 (lower is better) Translates to: RRQRASPGTMQA*IFPVLPDLRLR Trigger: CCTGAGTCGCAGATCAGGAAGCACCGGGAAGATGCAGGCCTGCATGGTGCCGGGGCTGGCCCTCTGCCTCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS GCA 72 bp | TTCCCGGTGCTTCCTGATCTGCGACTCAGGCCCACCTaGAGCAGGATGAACCCAGGAAGGGCGAGACCACCC | + |
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Preference number: 6 (lower is better) Translates to: FPVLPDLRLRPT*SRMNPGRARPP Trigger: GGGTGGTCTCGCCCTTCCTGGGTTCATCCTGCTGCAGGTGGGCCTGAGTCGCAGATCAGGAAGCACCGGGAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS CCA 72 bp | GGAACGTGGAAGCCCAGCGTGCTCCCCAGGGGGAAGTaGGCAAAGAAGGTTCGGGCCATGTCCTCGATCTGG | + |
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Preference number: 6 (lower is better) Translates to: GTWKPSVLPRGK*AKKVRAMSSIW Trigger: CCAGATCGAGGACATGGCCCGAACCTTCTTTGCCCACTTCCCCCTGGGGAGCACGCTGGGCTTCCACGTTCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS TCA 72 bp | CGGCACCATGCAGGCCTGCATCTTCCCGGTGCTTCCTaGTCTGCGACTCAGGCCCACCTGCAGCAGGATGAA | + |
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Preference number: 6 (lower is better) Translates to: RHHAGLHLPGAS*SATQAHLQQDE Trigger: TTCATCCTGCTGCAGGTGGGCCTGAGTCGCAGATCAGGAAGCACCGGGAAGATGCAGGCCTGCATGGTGCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS CCA 72 bp | TCCAGAAGTCAGAGGTGGAGAAAGGCCAGTAGGGCATaGCCGGCAGCTCCGCGTAAGGGTCTCCTTCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: SRSQRWRKASRA*PAAPRKGLLPP Trigger: AGGAGGAAGGAGACCCTTACGCGGAGCTGCCGGCCATGCCCTACTGGCCTTTCTCCACCTCTGACTTCTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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| CDS CCA 72 bp | CCTGGAAGTGCTGCACATAGTTCCAGAAGTCAGAGGTaGAGAAAGGCCAGTAGGGCATGGCCGGCAGCTCCG | + |
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Preference number: 6 (lower is better) Translates to: PGSAAHSSRSQR*RKASRAWPAAP Trigger: CGGAGCTGCCGGCCATGCCCTACTGGCCTTTCTCCACCTCTGACTTCTGGAACTATGTGCAGCACTTCCAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000319460.2 ENST00000391989.6 |
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