RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ORMDL3 (Homo sapiens)

Ensembl gene IDs: ENSG00000172057

Ensembl transcript IDs: ENST00000304046.7, ENST00000394169.5, ENST00000579695.5, ENST00000581284.5, ENST00000582052.1, ENST00000584000.1, ENST00000584220.5

Found 208 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGGGTGGCCTCACAACGCCACATGTGGCTGCCACATGAGAGGCCCTaGCCAGTGCCAGTCTGTATGAGGAAGTTAAGGGGTGAGGGCCTG +
Preference number: 1 (lower is better)
Translates to: GVASQRHMWLPHERP*PVPVCMRKLRGEGL
Trigger: CAGGCCCTCACCCCTTAACTTCCTCATACAGACTGGCACTGGGCAGGGCCTCTCATGTGGCAGCCACATGTGGCGTTGTGAGGCCACCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR TCA 90 bp GACCCCACATGGGGTGGCCTCACAACGCCACATGTGGCTGCCACATaGGAGGCCCTGCCCAGTGCCAGTCTGTATGAGGAAGTTAAGGGG +
Preference number: 1 (lower is better)
Translates to: DPTWGGLTTPHVAAT*EALPSASLYEEVKG
Trigger: CCCCTTAACTTCCTCATACAGACTGGCACTGGGCAGGGCCTCTCATGTGGCAGCCACATGTGGCGTTGTGAGGCCACCCCATGTGGGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR GCA 90 bp CAGGCTGAGACAGTGCCTACAGGCCACGTCTTGCCCCTTCCTCTGTaGTGCTTGAGCAGGGATCCTACAGGACTCTCACCACAGACCCCA +
Preference number: 1 (lower is better)
Translates to: QAETVPTGHVLPLPL*CLSRDPTGLSPQTP
Trigger: TGGGGTCTGTGGTGAGAGTCCTGTAGGATCCCTGCTCAAGCAGCACAGAGGAAGGGGCAAGACGTGGCCTGTAGGCACTGTCTCAGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR GCA 90 bp GCTGAGACAGTGCCTACAGGCCACGTCTTGCCCCTTCCTCTGTGCTaGTTGAGCAGGGATCCTACAGGACTCTCACCACAGACCCCACAT +
Preference number: 1 (lower is better)
Translates to: AETVPTGHVLPLPLC*LSRDPTGLSPQTPH
Trigger: ATGTGGGGTCTGTGGTGAGAGTCCTGTAGGATCCCTGCTCAAGCAGCACAGAGGAAGGGGCAAGACGTGGCCTGTAGGCACTGTCTCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR CCA 90 bp AGGACCCACGGTGGGTTGCAGAGAAGCTGCCAAAAGCCTGGGACTTaGATTAGACAGCTCCCTACCCAGAAAGGCAAAGACCCATCCCAC +
Preference number: 1 (lower is better)
Translates to: RTHGGLQRSCQKPGT*IRQLPTQKGKDPSH
Trigger: GTGGGATGGGTCTTTGCCTTTCTGGGTAGGGAGCTGTCTAATCCAAGTCCCAGGCTTTTGGCAGCTTCTCTGCAACCCACCGTGGGTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR-3UTR CCA 90 bp CTCTCACCACAGACCCCACATGGGGTGGCCTCACAACGCCACATGTGGCTGCCACCTGTCGCAACTGCGTaGTCCATGTTCAGCCCAGGA +
Preference number: 2 (lower is better)
Translates to: LSPQTPHGVASQRHMWLPPVATA*SMFSPG
Trigger: TCCTGGGCTGAACATGGACCACGCAGTTGCGACAGG...TGGCAGCCACATGTGGCGTTGTGAGGCCACCCCATGTGGGGTCTGTGGTGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR-3UTR GCA 90 bp CTTGAGCAGGGATCCTACAGGACTCTCACCACAGACCCCACATGGGGTGGCCTCCCACATGAGAGGCCCTaGCCAGTGCCAGTCTGTATG +
Preference number: 2 (lower is better)
Translates to: LEQGSYRTLTTDPTWGGLPHERP*PVPVCM
Trigger: CATACAGACTGGCACTGGGCAGGGCCTCTCATGTGG...GAGGCCACCCCATGTGGGGTCTGTGGTGAGAGTCCTGTAGGATCCCTGCTCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR-3UTR TCA 90 bp CTTGAGCAGGGATCCTACAGGACTCTCACCACAGACCCCACATGGGGTGGCCTCGACCTGTGCTTACAATaGCTCACGGGCCTTTTCCCC +
Preference number: 2 (lower is better)
Translates to: LEQGSYRTLTTDPTWGGLDLCLQ*LTGLFP
Trigger: GGGGAAAAGGCCCGTGAGTCATTGTAAGCACAGGTC...GAGGCCACCCCATGTGGGGTCTGTGGTGAGAGTCCTGTAGGATCCCTGCTCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR-3UTR CCA 90 bp CTTGAGCAGGGATCCTACAGGACTCTCACCACAGACCCCACATGGGGTGGCCTCCTCAACCCCCATCTCTaGCAGTGTCCAGAGGCTTCT +
Preference number: 2 (lower is better)
Translates to: LEQGSYRTLTTDPTWGGLLNPHL*QCPEAS
Trigger: AGAAGCCTCTGGACACTGCCAGAGATGGGGGTTGAG...GAGGCCACCCCATGTGGGGTCTGTGGTGAGAGTCCTGTAGGATCCCTGCTCAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR-3UTR CCA 90 bp CAGGCTGAGACAGTGCCTACAGGCCACGTCTTGCCCCTTCCTCTGTGCTGCTTGCAAGCTACTCCAAGTTaGCTACTGGGGGAAGCGAGG +
Preference number: 2 (lower is better)
Translates to: QAETVPTGHVLPLPLCCLQATPS*LLGEAR
Trigger: CCTCGCTTCCCCCAGTAGCCAACTTGGAGTAGCTTG...CAAGCAGCACAGAGGAAGGGGCAAGACGTGGCCTGTAGGCACTGTCTCAGCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR-3UTR GCA 90 bp CTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATCAGTGTTGCAGCACATaGCTTTTACCCTACCCCTCC +
Preference number: 2 (lower is better)
Translates to: LLSQLRGPCSAQEPSPFHQCCST*LLPYPS
Trigger: GGAGGGGTAGGGTAAAAGGCATGTGCTGCAACACTG...ATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR-3UTR CCA 90 bp CCATCGTTTCTGTCACAGCTTCCCCATACCCCCGCAGGAGTCAGGGCCAAGTTGTGGCCCCCTCACCTCTaGAACCAAGCCATCTACACT +
Preference number: 2 (lower is better)
Translates to: PSFLSQLPHTPAGVRAKLWPPHL*NQAIYT
Trigger: AGTGTAGATGGCTTGGTTCCAGAGGTGAGGGGGCCA...CAACTTGGCCCTGACTCCTGCGGGGGTATGGGGAAGCTGTGACAGAAACGATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR CAA 90 bp TCACTTTCTTCTCTGCAGGCTGAGACAGTGCCTACAGGCCACGTCTaGCCCCTTCCTCTGTGCTGCTTGAGCAGGGATCCTACAGGACTC +
Preference number: 2 (lower is better)
Translates to: SLSSLQAETVPTGHV*PLPLCCLSRDPTGL
Trigger: GAGTCCTGTAGGATCCCTGCTCAAGCAGCACAGAGGAAGGGGCAAGACGTGGCCTGTAGGCACTGTCTCAGCCTGCAGAGAAGAAAGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR-3UTR GCA 90 bp CTCAGGCTCCCGGCCTCACTTTCTTCTCTGCAGGCTGAGACAGTGCCTACAGGCGACCCATCCCACACTTaGTTCCATACACAAAAGCAC +
Preference number: 2 (lower is better)
Translates to: LRLPASLSSLQAETVPTGDPSHT*FHTQKH
Trigger: GTGCTTTTGTGTATGGAAGCAAGTGTGGGATGGGTC...GCCTGTAGGCACTGTCTCAGCCTGCAGAGAAGAAAGTGAGGCCGGGAGCCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR-3UTR CCA 90 bp CCTAGGAATCACAGTGAAACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTATGCCTGTCGCAACTGCGTaGTCCATGTTCAGCCCAGGA +
Preference number: 2 (lower is better)
Translates to: PRNHSETIQKPYRPLLPMPVATA*SMFSPG
Trigger: TCCTGGGCTGAACATGGACCACGCAGTTGCGACAGG...CATAGGGAGCAGAGGGCGGTACGGCTTCTGGATTGTTTCACTGTGATTCCTAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
3UTR-3UTR CCA 90 bp CTATCACATTCTGTGGGTAAATTAACCCTCCAAGCCTGCTTCCCTCCCTGCCCAGGGGTTAAAGTGCTTTaGCTGCCTGAGGGCAAACAA +
Preference number: 2 (lower is better)
Translates to: LSHSVGKLTLQACFPPCPGVKVL*LPEGKQ
Trigger: TTGTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCC...TGGGCAGGGAGGGAAGCAGGCTTGGAGGGTTAATTTACCCACAGAATGTGATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR-3UTR GCA 90 bp CAGAAAGGCAAAGACCCATCCCACACTTGCTTCCATACACAAAAGCACACACTGTTCTGTCTTCAGTGTTaGAGCACATGCCTTTTACCC +
Preference number: 2 (lower is better)
Translates to: QKGKDPSHTCFHTQKHTLFCLQC*STCLLP
Trigger: GGGTAAAAGGCATGTGCTGCAACACTGAAGACAGAA...CAGTGTGTGCTTTTGTGTATGGAAGCAAGTGTGGGATGGGTCTTTGCCTTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR GCA 72 bp CCCCACATGGGGTGGCCTCACAACGCCACATGTGGCTaGCACATGAGAGGCCCTGCCCAGTGCCAGTCTGTA +
Preference number: 3 (lower is better)
Translates to: PHMGWPHNATCG*HMRGPAQCQSV
Trigger: TACAGACTGGCACTGGGCAGGGCCTCTCATGTGGCAGCCACATGTGGCGTTGTGAGGCCACCCCATGTGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR TCA 72 bp GGAGATGCAGGGTCAGGAGGGAGAAAACAGGCCCAGTaGCCTCTCCCGTTCCCTTGGACCCCTGGAAGAGGA +
Preference number: 3 (lower is better)
Translates to: GDAGSGGRKQAQ*PLPFPWTPGRG
Trigger: TCCTCTTCCAGGGGTCCAAGGGAACGGGAGAGGTCACTGGGCCTGTTTTCTCCCTCCTGACCCTGCATCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR GCA 72 bp TCCCGGCCTCACTTTCTTCTCTGCAGGCTGAGACAGTaGCTACAGGCCACGTCTTGCCCCTTCCTCTGTGCT +
Preference number: 3 (lower is better)
Translates to: SRPHFLLCRLRQ*LQATSCPFLCA
Trigger: AGCACAGAGGAAGGGGCAAGACGTGGCCTGTAGGCACTGTCTCAGCCTGCAGAGAAGAAAGTGAGGCCGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR-3UTR CAA 90 bp CTCTCACCACAGACCCCACATGGGGTGGCCTCACAACGCCACATGTGGCTGCCAACATCCCAAAGGAGATaGGGTCTAGCTTCTGTCCCT +
Preference number: 3 (lower is better)
Translates to: LSPQTPHGVASQRHMWLPTSQRR*GLASVP
Trigger: AGGGACAGAAGCTAGACCCAATCTCCTTTGGGATGT...TGGCAGCCACATGTGGCGTTGTGAGGCCACCCCATGTGGGGTCTGTGGTGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR GCA 72 bp TCACAACGCCACATGTGGCTGCCACATGAGAGGCCCTaGCCAGTGCCAGTCTGTATGAGGAAGTTAAGGGGT +
Preference number: 3 (lower is better)
Translates to: SQRHMWLPHERP*PVPVCMRKLRG
Trigger: ACCCCTTAACTTCCTCATACAGACTGGCACTGGGCAGGGCCTCTCATGTGGCAGCCACATGTGGCGTTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR CCA 72 bp CCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTaGCTGCCTGAGGGCAAACAAGTGAGCAGGGGTTTT +
Preference number: 3 (lower is better)
Translates to: PPSAPYAGVKVL*LPEGKQVSRGF
Trigger: AAAACCCCTGCTCACTTGTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
3UTR-3UTR CAA 90 bp CTCAGGCTCCCGGCCTCACTTTCTTCTCTGCAGGCTGAGACAGTGCCTACAGGCTTTCTGTCTTCAGTGTaGCAGCACATGCCTTTTACC +
Preference number: 3 (lower is better)
Translates to: LRLPASLSSLQAETVPTGFLSSV*QHMPFT
Trigger: GGTAAAAGGCATGTGCTGCAACACTGAAGACAGAAA...GCCTGTAGGCACTGTCTCAGCCTGCAGAGAAGAAAGTGAGGCCGGGAGCCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR-3UTR CAA 90 bp ACCCATCGTTTCTGTCACAGCTTCCCCATACCCCCGCAGGAGTCAGGGCCAAGTTTTCTGTCTTCAGTGTaGCAGCACATGCCTTTTACC +
Preference number: 3 (lower is better)
Translates to: THRFCHSFPIPPQESGPSFLSSV*QHMPFT
Trigger: GGTAAAAGGCATGTGCTGCAACACTGAAGACAGAAA...ACTTGGCCCTGACTCCTGCGGGGGTATGGGGAAGCTGTGACAGAAACGATGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR GCA 72 bp CTCCCTACCCAGAAAGGCAAAGACCCATCCCACACTTaGTTCCATACACAAAAGCACACACTGCGTGGCATC +
Preference number: 3 (lower is better)
Translates to: LPTQKGKDPSHT*FHTQKHTLRGI
Trigger: GATGCCACGCAGTGTGTGCTTTTGTGTATGGAAGCAAGTGTGGGATGGGTCTTTGCCTTTCTGGGTAGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR-3UTR CAA 90 bp GGAGTTAAACCCACAGCAGCCTCCCTCCCCTATTACTATCACATTCTGTGGGTAACAAGCTACTCCAAGTaGGCTACTGGGGGAAGCGAG +
Preference number: 3 (lower is better)
Translates to: GVKPTAASLPYYYHILWVTSYSK*ATGGSE
Trigger: CTCGCTTCCCCCAGTAGCCAACTTGGAGTAGCTTGT...TACCCACAGAATGTGATAGTAATAGGGGAGGGAGGCTGCTGTGGGTTTAACTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR GCA 72 bp CTATCACATTCTGTGGGTAAATTAACCCTCCAAGCCTaGTTCCCTCCCTGCCCACATCCCAAAGGAGATTGG +
Preference number: 3 (lower is better)
Translates to: LSHSVGKLTLQA*FPPCPHPKGDW
Trigger: CCAATCTCCTTTGGGATGTGGGCAGGGAGGGAAGCAGGCTTGGAGGGTTAATTTACCCACAGAATGTGATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCAACGCCACATGTGGCTaGCACATGAGAGGCCCTGCC +
Preference number: 4 (lower is better)
Translates to: PWPPVATAWSMFSPGAQPNATCG*HMRGPA
Trigger: GGCAGGGCCTCTCATGTGGCAGCCACATGTGGCGTT...GGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCAAAATCCGGACTCCGTaGAGCTGGGGCAGCTTGGGG +
Preference number: 4 (lower is better)
Translates to: PWPPVATAWSMFSPGAQPKIRTP*SWGSLG
Trigger: CCCCAAGCTGCCCCAGCTCCACGGAGTCCGGATTTT...GGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CCA 90 bp CCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCCCTCTCCCGTTCCCTTaGACCCCTGGAAGAGGACAC +
Preference number: 4 (lower is better)
Translates to: PWPPVATAWSMFSPGAQPPLPFP*TPGRGH
Trigger: GTGTCCTCTTCCAGGGGTCCAAGGGAACGGGAGAGG...GGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CTCAGGCTCCCGGCCTCACTTTCTTCTCTGCAGGCTGAGACAGTGCCTACAGGCGTAACAACCCGCGGCTaGAGCCTCCCCGCTGGCAGC +
Preference number: 4 (lower is better)
Translates to: LRLPASLSSLQAETVPTGVTTRG*SLPAGS
Trigger: GCTGCCAGCGGGGAGGCTGCAGCCGCGGGTTGTTAC...GCCTGTAGGCACTGTCTCAGCCTGCAGAGAAGAAAGTGAGGCCGGGAGCCTGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp GGGTTTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGGGAGCGGGGGCCGCTaGTGCTCCAGCAGCTGTAAC +
Preference number: 4 (lower is better)
Translates to: GFFPWPPVATAWSMFSPGGSGGR*CSSSCN
Trigger: GTTACAGCTGCTGGAGCAGCAGCGGCCCCCGCTCCC...TCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAAACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp TCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCGCCTCCTGTCGCAACTaGGTGGTCCATGTTCAGCCC +
Preference number: 4 (lower is better)
Translates to: SPGLLSQLRGPCSAQEPSASCRN*VVHVQP
Trigger: GGGCTGAACATGGACCACGCAGTTGCGACAGGAGGC...GCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CCA 90 bp CCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCAGCCCCTCTCTGCGTGTaGGGCCGAAGATCAACGGCC +
Preference number: 4 (lower is better)
Translates to: PPVATAWSMFSPGAQPIPAPLCV*GRRSTA
Trigger: GGCCGTTGATCTTCGGCCCCACACGCAGAGAGGGGC...TGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579695.5
CDS-3UTR TCA 90 bp CTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATCATGTGGCTGCCACATaGGAGGCCCTGCCCAGTGCC +
Preference number: 4 (lower is better)
Translates to: LLSQLRGPCSAQEPSPFHHVAAT*EALPSA
Trigger: GGCACTGGGCAGGGCCTCTCATGTGGCAGCCACATG...ATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp TGCCCAGTGCCAGTCTGTATGAGGAAGTTAAGGGGTGAGGGCCTGCAGAGGACCGTAACAACCCGCGGCTaGAGCCTCCCCGCTGGCAGC +
Preference number: 4 (lower is better)
Translates to: CPVPVCMRKLRGEGLQRTVTTRG*SLPAGS
Trigger: GCTGCCAGCGGGGAGGCTGCAGCCGCGGGTTGTTAC...GGTCCTCTGCAGGCCCTCACCCCTTAACTTCCTCATACAGACTGGCACTGGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp TTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCCCTGCTGCCCCTCTCTaGGTGTGGGGCCGAAGATCA +
Preference number: 4 (lower is better)
Translates to: FSPGLLSQLRGPCSAQEPPAAPL*VWGRRS
Trigger: TGATCTTCGGCCCCACACGCAGAGAGGGGCAGCAGG...GGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENST00000579695.5
CDS-3UTR CCA 90 bp TTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCTCGCCTTGCCCTaGTCCGGGGTCTCAAAGGGT +
Preference number: 4 (lower is better)
Translates to: FSPGLLSQLRGPCSAQEPSLALP*SGVSKG
Trigger: ACCCTTTGAGACCCCGGACCAGGGCAAGGCGAGGCT...GGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CCA 90 bp TTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCCGGACTCCGTGGAGCTaGGGCAGCTTGGGGATAAGC +
Preference number: 4 (lower is better)
Translates to: FSPGLLSQLRGPCSAQEPRTPWS*GSLGIS
Trigger: GCTTATCCCCAAGCTGCCCCAGCTCCACGGAGTCCG...GGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CCA 90 bp CTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGGATGGCAGCAGCCCTaGCCCCCTCACCTCTGGAAC +
Preference number: 4 (lower is better)
Translates to: LLSQLRGPCSAQEPSPFHGWQQP*PPHLWN
Trigger: GTTCCAGAGGTGAGGGGGCCAGGGCTGCTGCCATCC...ATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp CTCTCACCACAGACCCCACATGGGGTGGCCTCACAACGCCACATGTGGCTGCCAGAGGAAGTTAAGGGGTaGGGGCCTGCAGAGGACCAC +
Preference number: 4 (lower is better)
Translates to: LSPQTPHGVASQRHMWLPEEVKG*GPAEDH
Trigger: GTGGTCCTCTGCAGGCCCTCACCCCTTAACTTCCTC...TGGCAGCCACATGTGGCGTTGTGAGGCCACCCCATGTGGGGTCTGTGGTGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CTTGAGCAGGGATCCTACAGGACTCTCACCACAGACCCCACATGGGGTGGCCTCAGCGGGGGCCGCTGCTaGTCCAGCAGCTGTAACAAC +
Preference number: 4 (lower is better)
Translates to: LEQGSYRTLTTDPTWGGLSGGRC*SSSCNN
Trigger: GTTGTTACAGCTGCTGGAGCAGCAGCGGCCCCCGCT...GAGGCCACCCCATGTGGGGTCTGTGGTGAGAGTCCTGTAGGATCCCTGCTCAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp GGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCGTAGGAGAGCCAGATaGCACGGCTGTTCATCACCC +
Preference number: 4 (lower is better)
Translates to: GLLSQLRGPCSAQEPSPFRRRAR*HGCSSP
Trigger: GGGTGATGAACAGCCGTGGCATCTGGCTCTCCTACG...GAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCAAACGCCACATGTGGCTaGCACATGAGAGGCCCTGCC +
Preference number: 4 (lower is better)
Translates to: PPVATAWSMFSPGAQPIPNATCG*HMRGPA
Trigger: GGCAGGGCCTCTCATGTGGCAGCCACATGTGGCGTT...TGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp GGGTTTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAAGCCTCGCCTTGCCCTaGTCCGGGGTCTCAAAGGGT +
Preference number: 4 (lower is better)
Translates to: GFFPWPPVATAWSMFSPGSLALP*SGVSKG
Trigger: ACCCTTTGAGACCCCGGACCAGGGCAAGGCGAGGCT...TCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAAACCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CCA 90 bp GGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCTCCATCTGCTCCCAGTaGGTTAGCAGCCTCGCCTTG +
Preference number: 4 (lower is better)
Translates to: GLLSQLRGPCSAQEPSPFSICSQ*VSSLAL
Trigger: CAAGGCGAGGCTGCTAACCCACTGGGAGCAGATGGA...GAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CCA 90 bp CCATCGTTTCTGTCACAGCTTCCCCATACCCCCGCAGGAGTCAGGGCCAAGTTGGGATGGCAGCAGCCCTaGCCCCCTCACCTCTGGAAC +
Preference number: 4 (lower is better)
Translates to: PSFLSQLPHTPAGVRAKLGWQQP*PPHLWN
Trigger: GTTCCAGAGGTGAGGGGGCCAGGGCTGCTGCCATCC...CAACTTGGCCCTGACTCCTGCGGGGGTATGGGGAAGCTGTGACAGAAACGATGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp CCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCAAGAAAACAGGCCCAGTaGCCTCTCCCGTTCCCTTGG +
Preference number: 4 (lower is better)
Translates to: PPVATAWSMFSPGAQPIPRKQAQ*PLPFPW
Trigger: CCAAGGGAACGGGAGAGGTCACTGGGCCTGTTTTCT...TGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CAGAAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCAGCGGGGGCCGCTGCTaGTCCAGCAGCTGTAACAAC +
Preference number: 4 (lower is better)
Translates to: QKPYRPLLPMQGLKCFGCSGGRC*SSSCNN
Trigger: GTTGTTACAGCTGCTGGAGCAGCAGCGGCCCCCGCT...GCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp GGATCCTACAGGACTCTCACCACAGACCCCACATGGGGTGGCCTCACAACGCCACCTCGCTGTGCGCTGTaGCCACATTCATCCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GSYRTLTTDPTWGGLTTPPRCAL*PHSSCC
Trigger: GCAGCAGGATGAATGTGGGCACAGCGCACAGCGAGG...TGGCGTTGTGAGGCCACCCCATGTGGGGTCTGTGGTGAGAGTCCTGTAGGATCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CTCTCACCACAGACCCCACATGGGGTGGCCTCACAACGCCACATGTGGCTGCCAGGGTTCACCTCGCTGTaGGCTGTGCCCACATTCATC +
Preference number: 4 (lower is better)
Translates to: LSPQTPHGVASQRHMWLPGFTSL*AVPTFI
Trigger: GATGAATGTGGGCACAGCGCACAGCGAGGTGAACCC...TGGCAGCCACATGTGGCGTTGTGAGGCCACCCCATGTGGGGTCTGTGGTGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp GGATCCTACAGGACTCTCACCACAGACCCCACATGGGGTGGCCTCACAACGCCAGCCTCCTGTCGCAACTaGGTGGTCCATGTTCAGCCC +
Preference number: 4 (lower is better)
Translates to: GSYRTLTTDPTWGGLTTPASCRN*VVHVQP
Trigger: GGGCTGAACATGGACCACGCAGTTGCGACAGGAGGC...TGGCGTTGTGAGGCCACCCCATGTGGGGTCTGTGGTGAGAGTCCTGTAGGATCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CTCTCACCACAGACCCCACATGGGGTGGCCTCACAACGCCACATGTGGCTGCCACCACATGAGAGGCCCTaGCCAGTGCCAGTCTGTATG +
Preference number: 4 (lower is better)
Translates to: LSPQTPHGVASQRHMWLPPHERP*PVPVCM
Trigger: CATACAGACTGGCACTGGGCAGGGCCTCTCATGTGG...TGGCAGCCACATGTGGCGTTGTGAGGCCACCCCATGTGGGGTCTGTGGTGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp TTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCTGCCCACATTCATCCTaGTGCCCCTCTCTGCGTGTG +
Preference number: 4 (lower is better)
Translates to: FSPGLLSQLRGPCSAQEPCPHSS*CPSLRV
Trigger: CACACGCAGAGAGGGGCAGCAGGATGAATGTGGGCA...GGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000579695.5
CDS-3UTR CCA 90 bp CCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATCTCTGCTGTTCGTGTaGGGCCGAAGATCAACGGCC +
Preference number: 4 (lower is better)
Translates to: PPVATAWSMFSPGAQPIPSLLFV*GRRSTA
Trigger: GGCCGTTGATCTTCGGCCCCACACGAACAGCAGAGA...TGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000304046.7
CDS-3UTR CCA 90 bp CAGGCTGAGACAGTGCCTACAGGCCACGTCTTGCCCCTTCCTCTGTGCTGCTTGTCATCACCCGCGTGTTaGGGTTCACCTCGCTGTGCG +
Preference number: 4 (lower is better)
Translates to: QAETVPTGHVLPLPLCCLSSPAC*GSPRCA
Trigger: CGCACAGCGAGGTGAACCCCAACACGCGGGTGATGA...CAAGCAGCACAGAGGAAGGGGCAAGACGTGGCCTGTAGGCACTGTCTCAGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp GGATCCTACAGGACTCTCACCACAGACCCCACATGGGGTGGCCTCACAACGCCATGTGGAGGAGACCGATaGCCAGCACGTAGGAGAGCC +
Preference number: 4 (lower is better)
Translates to: GSYRTLTTDPTWGGLTTPCGGDR*PARRRA
Trigger: GGCTCTCCTACGTGCTGGCCATCGGTCTCCTCCACA...TGGCGTTGTGAGGCCACCCCATGTGGGGTCTGTGGTGAGAGTCCTGTAGGATCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CAGGCTGAGACAGTGCCTACAGGCCACGTCTTGCCCCTTCCTCTGTGCTGCTTGTGTGGAGGAGACCGATaGCCAGCACGTAGGAGAGCC +
Preference number: 4 (lower is better)
Translates to: QAETVPTGHVLPLPLCCLCGGDR*PARRRA
Trigger: GGCTCTCCTACGTGCTGGCCATCGGTCTCCTCCACA...CAAGCAGCACAGAGGAAGGGGCAAGACGTGGCCTGTAGGCACTGTCTCAGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CTGGCCCCCTCACCTCTGGAACCAAGCCATCTACACTCTACCCCATCTTTCCCCAGCCTCGCCTTGCCCTaGTCCGGGGTCTCAAAGGGT +
Preference number: 4 (lower is better)
Translates to: LAPSPLEPSHLHSTPSFPSLALP*SGVSKG
Trigger: ACCCTTTGAGACCCCGGACCAGGGCAAGGCGAGGCT...GGGGAAAGATGGGGTAGAGTGTAGATGGCTTGGTTCCAGAGGTGAGGGGGCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp GGGTTTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAAAAATCCGGACTCCGTaGAGCTGGGGCAGCTTGGGG +
Preference number: 4 (lower is better)
Translates to: GFFPWPPVATAWSMFSPGKIRTP*SWGSLG
Trigger: CCCCAAGCTGCCCCAGCTCCACGGAGTCCGGATTTT...TCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAAACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CCA 90 bp TTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCCCTGTCGCAACTGCGTaGTCCATGTTCAGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: FSPGLLSQLRGPCSAQEPPVATA*SMFSPG
Trigger: TCCTGGGCTGAACATGGACCACGCAGTTGCGACAGG...GGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
3UTR CAA 72 bp AGGGAGAAAACAGGCCCAGTGACCTCTCCCGTTCCCTaGGACCCCTGGAAGAGGACACAGGGACCCACACCT +
Preference number: 4 (lower is better)
Translates to: REKTGPVTSPVP*DPWKRTQGPTP
Trigger: AGGTGTGGGTCCCTGTGTCCTCTTCCAGGGGTCCAAGGGAACGGGAGAGGTCACTGGGCCTGTTTTCTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp TCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCTACATGCCCATGTTGTaGATGAGGTTGGTGAGGGTC +
Preference number: 4 (lower is better)
Translates to: SPGLLSQLRGPCSAQEPSYMPML*MRLVRV
Trigger: GACCCTCACCAACCTCATTCACAACATGGGCATGTA...GCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp TTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCACTTCCGAGAGGCCGTaGACTGGACCCCATAATCCA +
Preference number: 4 (lower is better)
Translates to: FSPGLLSQLRGPCSAQEPTSERP*TGPHNP
Trigger: TGGATTATGGGGTCCAGTTCACGGCCTCTCGGAAGT...GGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR TCA 90 bp CAGAAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCGAGGAAGTTAAGGGGTaGGGGCCTGCAGAGGACCAC +
Preference number: 4 (lower is better)
Translates to: QKPYRPLLPMQGLKCFGCEEVKG*GPAEDH
Trigger: GTGGTCCTCTGCAGGCCCTCACCCCTTAACTTCCTC...GCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp CCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATTCTTCTCTGCAGGCTaGGACAGTGCCTACAGGCCA +
Preference number: 4 (lower is better)
Translates to: PPVATAWSMFSPGAQPIPFFSAG*DSAYRP
Trigger: TGGCCTGTAGGCACTGTCTCAGCCTGCAGAGAAGAA...TGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CCATCGTTTCTGTCACAGCTTCCCCATACCCCCGCAGGAGTCAGGGCCAAGTTGCCTCGCTGTGCGCTGTaGCCACATTCATCCTGCTGC +
Preference number: 4 (lower is better)
Translates to: PSFLSQLPHTPAGVRAKLPRCAL*PHSSCC
Trigger: GCAGCAGGATGAATGTGGGCACAGCGCACAGCGAGG...CAACTTGGCCCTGACTCCTGCGGGGGTATGGGGAAGCTGTGACAGAAACGATGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp GGGTTTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGGGTTCACCTCGCTGTaGGCTGTGCCCACATTCATC +
Preference number: 4 (lower is better)
Translates to: GFFPWPPVATAWSMFSPGGFTSL*AVPTFI
Trigger: GATGAATGTGGGCACAGCGCACAGCGAGGTGAACCC...TCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAAACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp GGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCATGCAGGGGTTAAAGTaGTTTGGCTGCCTGAGGGCA +
Preference number: 4 (lower is better)
Translates to: GLLSQLRGPCSAQEPSPFMQGLK*FGCLRA
Trigger: TGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGCAT...GAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR GCA 90 bp CCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCGACCCATCCCACACTTaGTTCCATACACAAAAGCAC +
Preference number: 4 (lower is better)
Translates to: PWPPVATAWSMFSPGAQPDPSHT*FHTQKH
Trigger: GTGCTTTTGTGTATGGAAGCAAGTGTGGGATGGGTC...GGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp GAGAGGCCCTGCCCAGTGCCAGTCTGTATGAGGAAGTTAAGGGGTGAGGGCCTGGGACCCACGGTGGGTTaGAGAGAAGCTGCCAAAAGC +
Preference number: 4 (lower is better)
Translates to: ERPCPVPVCMRKLRGEGLGPTVG*REAAKS
Trigger: GCTTTTGGCAGCTTCTCTGCAACCCACCGTGGGTCC...CAGGCCCTCACCCCTTAACTTCCTCATACAGACTGGCACTGGGCAGGGCCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp GGGTTTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGATGCAGGCTGAGACAGTaGCTACAGGCCACGTCTTGC +
Preference number: 4 (lower is better)
Translates to: GFFPWPPVATAWSMFSPGCRLRQ*LQATSC
Trigger: GCAAGACGTGGCCTGTAGGCACTGTCTCAGCCTGCA...TCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAAACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CTGGCCCCCTCACCTCTGGAACCAAGCCATCTACACTCTACCCCATCTTTCCCCTCATCACCCGCGTGTTaGGGTTCACCTCGCTGTGCG +
Preference number: 4 (lower is better)
Translates to: LAPSPLEPSHLHSTPSFPSSPAC*GSPRCA
Trigger: CGCACAGCGAGGTGAACCCCAACACGCGGGTGATGA...GGGGAAAGATGGGGTAGAGTGTAGATGGCTTGGTTCCAGAGGTGAGGGGGCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTGAGGGCAAACCTCAGCAGCACGATGTaGAGGAGACCGATGGCCAGC +
Preference number: 4 (lower is better)
Translates to: RPLLPMQGLKCFGCLRANLSSTM*RRPMAS
Trigger: GCTGGCCATCGGTCTCCTCCACATCGTGCTGCTGAG...GTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATGGAGTCTCTCGGACTCCGTGGAGCTaGGGCAGCTTGGGGATAAGC +
Preference number: 4 (lower is better)
Translates to: PCSAQEPSPFHDQLHGVSRTPWS*GSLGIS
Trigger: GCTTATCCCCAAGCTGCCCCAGCTCCACGGAGTCCG...AGAGACTCCATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CCA 90 bp AAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTGAAAATCCGGACTCCGTaGAGCTGGGGCAGCTTGGGG +
Preference number: 4 (lower is better)
Translates to: KPYRPLLPMQGLKCFGCLKIRTP*SWGSLG
Trigger: CCCCAAGCTGCCCCAGCTCCACGGAGTCCGGATTTT...CAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CCA 90 bp CCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCACTCAACCCCCATCTCTaGCAGTGTCCAGAGGCTTCT +
Preference number: 4 (lower is better)
Translates to: PPVATAWSMFSPGAQPIPLNPHL*QCPEAS
Trigger: AGAAGCCTCTGGACACTGCCAGAGATGGGGGTTGAG...TGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp TCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCGAGTCAGGGCCAAGTTaGACCTGTGCTTACAATGAC +
Preference number: 4 (lower is better)
Translates to: SPGLLSQLRGPCSAQEPSESGPS*TCAYND
Trigger: GTCATTGTAAGCACAGGTCCAACTTGGCCCTGACTC...GCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATACCACAGACCCCACATaGGGTGGCCTCACAACGCCA +
Preference number: 4 (lower is better)
Translates to: LRGPCSAQEPSPFHDQLHTTDPT*GGLTTP
Trigger: TGGCGTTGTGAGGCCACCCCATGTGGGGTCTGTGGT...ATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CAGAAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCACCACAGACCCCACATaGGGTGGCCTCACAACGCCA +
Preference number: 4 (lower is better)
Translates to: QKPYRPLLPMQGLKCFGCTTDPT*GGLTTP
Trigger: TGGCGTTGTGAGGCCACCCCATGTGGGGTCTGTGGT...GCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CTGGCCCCCTCACCTCTGGAACCAAGCCATCTACACTCTACCCCATCTTTCCCCCCTCTCCCGTTCCCTTaGACCCCTGGAAGAGGACAC +
Preference number: 4 (lower is better)
Translates to: LAPSPLEPSHLHSTPSFPPLPFP*TPGRGH
Trigger: GTGTCCTCTTCCAGGGGTCCAAGGGAACGGGAGAGG...GGGGAAAGATGGGGTAGAGTGTAGATGGCTTGGTTCCAGAGGTGAGGGGGCCAG
60% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
3UTR CAA 72 bp TCTCTGCAGGCTGAGACAGTGCCTACAGGCCACGTCTaGCCCCTTCCTCTGTGCTGCTTGAGCAGGGATCCT +
Preference number: 4 (lower is better)
Translates to: SLQAETVPTGHV*PLPLCCLSRDP
Trigger: AGGATCCCTGCTCAAGCAGCACAGAGGAAGGGGCAAGACGTGGCCTGTAGGCACTGTCTCAGCCTGCAGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp GGATCCTACAGGACTCTCACCACAGACCCCACATGGGGTGGCCTCACAACGCCAACTTCCGAGAGGCCGTaGACTGGACCCCATAATCCA +
Preference number: 4 (lower is better)
Translates to: GSYRTLTTDPTWGGLTTPTSERP*TGPHNP
Trigger: TGGATTATGGGGTCCAGTTCACGGCCTCTCGGAAGT...TGGCGTTGTGAGGCCACCCCATGTGGGGTCTGTGGTGAGAGTCCTGTAGGATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp GGGTTTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAAGTGCTTTGGCTGCCTaGGGGCAAACAAGTGAGCAG +
Preference number: 4 (lower is better)
Translates to: GFFPWPPVATAWSMFSPGSALAA*GQTSEQ
Trigger: CTGCTCACTTGTTTGCCCTCAGGCAGCCAAAGCACT...TCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAAACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR TCA 90 bp CTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCTGTGCTTACAATaGCTCACGGGCCTTTTCCCC +
Preference number: 4 (lower is better)
Translates to: LLSQLRGPCSAQEPSPFHDLCLQ*LTGLFP
Trigger: GGGGAAAAGGCCCGTGAGTCATTGTAAGCACAGGTC...ATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp ACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTCATGTGGCTGCCACATaGGAGGCCCTGCCCAGTGCC +
Preference number: 4 (lower is better)
Translates to: TIQKPYRPLLPMQGLKCFHVAAT*EALPSA
Trigger: GGCACTGGGCAGGGCCTCTCATGTGGCAGCCACATG...AAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTTCTGGATTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp CAGGCTGAGACAGTGCCTACAGGCCACGTCTTGCCCCTTCCTCTGTGCTGCTTGTTCCTCTGTGCTGCTTaGGCAGGGATCCTACAGGAC +
Preference number: 4 (lower is better)
Translates to: QAETVPTGHVLPLPLCCLFLCAA*AGILQD
Trigger: GTCCTGTAGGATCCCTGCTCAAGCAGCACAGAGGAA...CAAGCAGCACAGAGGAAGGGGCAAGACGTGGCCTGTAGGCACTGTCTCAGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp CTTGAGCAGGGATCCTACAGGACTCTCACCACAGACCCCACATGGGGTGGCCTCTTCTTCTCTGCAGGCTaGGACAGTGCCTACAGGCCA +
Preference number: 4 (lower is better)
Translates to: LEQGSYRTLTTDPTWGGLFFSAG*DSAYRP
Trigger: TGGCCTGTAGGCACTGTCTCAGCCTGCAGAGAAGAA...GAGGCCACCCCATGTGGGGTCTGTGGTGAGAGTCCTGTAGGATCCCTGCTCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp CTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATAGAAAACAGGCCCAGTaGCCTCTCCCGTTCCCTTGG +
Preference number: 4 (lower is better)
Translates to: LRGPCSAQEPSPFHDQLHRKQAQ*PLPFPW
Trigger: CCAAGGGAACGGGAGAGGTCACTGGGCCTGTTTTCT...ATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CTCAGGCTCCCGGCCTCACTTTCTTCTCTGCAGGCTGAGACAGTGCCTACAGGCTGCCCACATTCATCCTaGTGCCCCTCTCTGCTGTTC +
Preference number: 4 (lower is better)
Translates to: LRLPASLSSLQAETVPTGCPHSS*CPSLLF
Trigger: GAACAGCAGAGAGGGGCAGCAGGATGAATGTGGGCA...GCCTGTAGGCACTGTCTCAGCCTGCAGAGAAGAAAGTGAGGCCGGGAGCCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000304046.7
CDS-3UTR GCA 90 bp GTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATGGAGTCTTTAGCAGCCTCGCCTTaGCCTGGTCCGGGGTCTCAA +
Preference number: 4 (lower is better)
Translates to: VHVQPRSPAHSMTNSMESLAASP*PGPGSQ
Trigger: TTGAGACCCCGGACCAGGGCAAGGCGAGGCTGCTAA...AGACTCCATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR GCA 90 bp CTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATGGACCCACGGTGGGTTaGAGAGAAGCTGCCAAAAGC +
Preference number: 4 (lower is better)
Translates to: LRGPCSAQEPSPFHDQLHGPTVG*REAAKS
Trigger: GCTTTTGGCAGCTTCTCTGCAACCCACCGTGGGTCC...ATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp GGGTTTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGATTAACCCTCCAAGCCTaGTTCCCTCCCTGCCCACAT +
Preference number: 4 (lower is better)
Translates to: GFFPWPPVATAWSMFSPGLTLQA*FPPCPH
Trigger: ATGTGGGCAGGGAGGGAAGCAGGCTTGGAGGGTTAA...TCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAAACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp ACCCATCGTTTCTGTCACAGCTTCCCCATACCCCCGCAGGAGTCAGGGCCAAGTCCACATGAGAGGCCCTaGCCAGTGCCAGTCTGTATG +
Preference number: 4 (lower is better)
Translates to: THRFCHSFPIPPQESGPSPHERP*PVPVCM
Trigger: CATACAGACTGGCACTGGGCAGGGCCTCTCATGTGG...ACTTGGCCCTGACTCCTGCGGGGGTATGGGGAAGCTGTGACAGAAACGATGGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CAGAAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTACAGGCCACGTCTTaGCCCTTCCTCTGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: QKPYRPLLPMQGLKCFGCLQATS*PFLCAA
Trigger: AGCAGCACAGAGGAAGGGGCAAGACGTGGCCTGTAG...GCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTGAGGGCAAACTGCAGGCTGAGACAGTaGCTACAGGCCACGTCTTGC +
Preference number: 4 (lower is better)
Translates to: RPLLPMQGLKCFGCLRANCRLRQ*LQATSC
Trigger: GCAAGACGTGGCCTGTAGGCACTGTCTCAGCCTGCA...GTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp AAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTGTCCATCTGCTCCCAGTaGGTTAGCAGCCTCGCCTTG +
Preference number: 4 (lower is better)
Translates to: KPYRPLLPMQGLKCFGCLSICSQ*VSSLAL
Trigger: CAAGGCGAGGCTGCTAACCCACTGGGAGCAGATGGA...CAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CCA 90 bp GGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATGGAGTCTCCATCTGCTCCCAGTaGGTTAGCAGCCTCGCCTTG +
Preference number: 4 (lower is better)
Translates to: GPCSAQEPSPFHDQLHGVSICSQ*VSSLAL
Trigger: CAAGGCGAGGCTGCTAACCCACTGGGAGCAGATGGA...GACTCCATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CCA 90 bp CTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATCTCAACCCCCATCTCTaGCAGTGTCCAGAGGCTTCT +
Preference number: 4 (lower is better)
Translates to: LLSQLRGPCSAQEPSPFHLNPHL*QCPEAS
Trigger: AGAAGCCTCTGGACACTGCCAGAGATGGGGGTTGAG...ATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATCCTGTCGCAACTGCGTaGTCCATGTTCAGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: LRGPCSAQEPSPFHDQLHPVATA*SMFSPG
Trigger: TCCTGGGCTGAACATGGACCACGCAGTTGCGACAGG...ATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CCA 90 bp AAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTGAACCAGGACCCACGGTaGGTTGCAGAGAAGCTGCCA +
Preference number: 4 (lower is better)
Translates to: KPYRPLLPMQGLKCFGCLNQDPR*VAEKLP
Trigger: TGGCAGCTTCTCTGCAACCCACCGTGGGTCCTGGTT...CAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp AAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTGAGTGCTTTGGCTGCCTaGGGGCAAACAAGTGAGCAG +
Preference number: 4 (lower is better)
Translates to: KPYRPLLPMQGLKCFGCLSALAA*GQTSEQ
Trigger: CTGCTCACTTGTTTGCCCTCAGGCAGCCAAAGCACT...CAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR TCA 90 bp CGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTGAGGGCAAACGACCTGTGCTTACAATaGCTCACGGGCCTTTTCCCC +
Preference number: 4 (lower is better)
Translates to: RPLLPMQGLKCFGCLRANDLCLQ*LTGLFP
Trigger: GGGGAAAAGGCCCGTGAGTCATTGTAAGCACAGGTC...GTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp GAGAGGCCCTGCCCAGTGCCAGTCTGTATGAGGAAGTTAAGGGGTGAGGGCCTGGGTGAAAGTTCCCTATaGTACACGGGGTGGGAGATG +
Preference number: 4 (lower is better)
Translates to: ERPCPVPVCMRKLRGEGLGESSL*YTGWEM
Trigger: CATCTCCCACCCCGTGTATCATAGGGAACTTTCACC...CAGGCCCTCACCCCTTAACTTCCTCATACAGACTGGCACTGGGCAGGGCCTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp GAGAGGCCCTGCCCAGTGCCAGTCTGTATGAGGAAGTTAAGGGGTGAGGGCCTGGTCCCCTTCACCGTGTaGAGGAAGATATACATGCCC +
Preference number: 4 (lower is better)
Translates to: ERPCPVPVCMRKLRGEGLVPFTV*RKIYMP
Trigger: GGGCATGTATATCTTCCTGCACACGGTGAAGGGGAC...CAGGCCCTCACCCCTTAACTTCCTCATACAGACTGGCACTGGGCAGGGCCTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTGAGGGTCCCCTTCACCGTGTaGAGGAAGATATACATGCCC +
Preference number: 4 (lower is better)
Translates to: PYRPLLPMQGLKCFGCLRVPFTV*RKIYMP
Trigger: GGGCATGTATATCTTCCTGCACACGGTGAAGGGGAC...CCTCAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR GCA 90 bp AGCCCAGCCCATTCCATGACCAACTCCATGGAGTCTCTTTTACCCTACCCCTCCTTAGCAGCCTCGCCTTaGCCTGGTCCGGGGTCTCAA +
Preference number: 4 (lower is better)
Translates to: SPAHSMTNSMESLLPYPSLAASP*PGPGSQ
Trigger: TTGAGACCCCGGACCAGGGCAAGGCGAGGCTGCTAA...GGAGGGGTAGGGTAAAAGAGACTCCATGGAGTTGGTCATGGAATGGGCTGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000581284.5
CDS-3UTR GCA 90 bp CTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATATGCAGGGGTTAAAGTaGTTTGGCTGCCTGAGGGCA +
Preference number: 4 (lower is better)
Translates to: LLSQLRGPCSAQEPSPFHMQGLK*FGCLRA
Trigger: TGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGCAT...ATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR GCA 90 bp TGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATGCCCCTTCCTCTGTGCTaGTTGAGCAGGGATCCTACA +
Preference number: 4 (lower is better)
Translates to: CVVHVQPRSPAHSMTNSMPLPLC*LSRDPT
Trigger: TGTAGGATCCCTGCTCAAGCAGCACAGAGGAAGGGG...CATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CACGTCTTGCCCCTTCCTCTGTGCTGCTTGAGCAGGGATCCTACAGGACTCTCACTACAGGCCACGTCTTaGCCCTTCCTCTGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: HVLPLPLCCLSRDPTGLSLQATS*PFLCAA
Trigger: AGCAGCACAGAGGAAGGGGCAAGACGTGGCCTGTAG...TGAGAGTCCTGTAGGATCCCTGCTCAAGCAGCACAGAGGAAGGGGCAAGACGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp ACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTCGGACTCCGTGGAGCTaGGGCAGCTTGGGGATAAGC +
Preference number: 4 (lower is better)
Translates to: TIQKPYRPLLPMQGLKCFRTPWS*GSLGIS
Trigger: GCTTATCCCCAAGCTGCCCCAGCTCCACGGAGTCCG...AAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTTCTGGATTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CCA 90 bp AAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTGCAAGCTACTCCAAGTTaGCTACTGGGGGAAGCGAGG +
Preference number: 4 (lower is better)
Translates to: KPYRPLLPMQGLKCFGCLQATPS*LLGEAR
Trigger: CCTCGCTTCCCCCAGTAGCCAACTTGGAGTAGCTTG...CAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CAGAAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCTGGCCCCCTCACCTCTaGAACCAAGCCATCTACACT +
Preference number: 4 (lower is better)
Translates to: QKPYRPLLPMQGLKCFGCWPPHL*NQAIYT
Trigger: AGTGTAGATGGCTTGGTTCCAGAGGTGAGGGGGCCA...GCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATTGGCCCCCTCACCTCTaGAACCAAGCCATCTACACT +
Preference number: 4 (lower is better)
Translates to: LRGPCSAQEPSPFHDQLHWPPHL*NQAIYT
Trigger: AGTGTAGATGGCTTGGTTCCAGAGGTGAGGGGGCCA...ATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp TGCCCAGTGCCAGTCTGTATGAGGAAGTTAAGGGGTGAGGGCCTGCAGAGGACCGGTGAAAGTTCCCTATaGTACACGGGGTGGGAGATG +
Preference number: 4 (lower is better)
Translates to: CPVPVCMRKLRGEGLQRTGESSL*YTGWEM
Trigger: CATCTCCCACCCCGTGTATCATAGGGAACTTTCACC...GGTCCTCTGCAGGCCCTCACCCCTTAACTTCCTCATACAGACTGGCACTGGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTGAGGGCAAACAACGTAGGAGAGCCAGATaGCACGGCTGTTCATCACCC +
Preference number: 4 (lower is better)
Translates to: PSAPYAGVKVLWLPEGKQRRRAR*HGCSSP
Trigger: GGGTGATGAACAGCCGTGGCATCTGGCTCTCCTACG...TTGTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CCATCGTTTCTGTCACAGCTTCCCCATACCCCCGCAGGAGTCAGGGCCAAGTTGGTCCCCTTCACCGTGTaGAGGAAGATATACATGCCC +
Preference number: 4 (lower is better)
Translates to: PSFLSQLPHTPAGVRAKLVPFTV*RKIYMP
Trigger: GGGCATGTATATCTTCCTGCACACGGTGAAGGGGAC...CAACTTGGCCCTGACTCCTGCGGGGGTATGGGGAAGCTGTGACAGAAACGATGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTGAGGGCAAACCAGTGTTGCAGCACATaGCTTTTACCCTACCCCTCC +
Preference number: 4 (lower is better)
Translates to: RPLLPMQGLKCFGCLRANQCCST*LLPYPS
Trigger: GGAGGGGTAGGGTAAAAGGCATGTGCTGCAACACTG...GTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp ACCCATCGTTTCTGTCACAGCTTCCCCATACCCCCGCAGGAGTCAGGGCCAAGTCTTACACCAGTCCTCTaGTGCTATGTGGCCCCATTC +
Preference number: 4 (lower is better)
Translates to: THRFCHSFPIPPQESGPSLTPVL*CYVAPF
Trigger: GAATGGGGCCACATAGCAGCAGAGGACTGGTGTAAG...ACTTGGCCCTGACTCCTGCGGGGGTATGGGGAAGCTGTGACAGAAACGATGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp ACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTCCACATTCATCCTGCTaGCCCTCTCTGCGTGTGGGG +
Preference number: 4 (lower is better)
Translates to: TIQKPYRPLLPMQGLKCFPHSSC*PSLRVG
Trigger: CCCCACACGCAGAGAGGGGCAGCAGGATGAATGTGG...AAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTTCTGGATTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579695.5
CDS-3UTR CCA 90 bp GGGTTTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGAGTCAGGGCCAAGTTaGACCTGTGCTTACAATGAC +
Preference number: 4 (lower is better)
Translates to: GFFPWPPVATAWSMFSPGESGPS*TCAYND
Trigger: GTCATTGTAAGCACAGGTCCAACTTGGCCCTGACTC...TCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAAACCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTGAGGGCAAACAAAGACCCCACATGGGGTaGCCTCACAACGCCACATGT +
Preference number: 4 (lower is better)
Translates to: PSAPYAGVKVLWLPEGKQRPHMG*PHNATC
Trigger: ACATGTGGCGTTGTGAGGCCACCCCATGTGGGGTCT...TTGTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp CTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATTACATGCCCATGTTGTaGATGAGGTTGGTGAGGGTC +
Preference number: 4 (lower is better)
Translates to: LRGPCSAQEPSPFHDQLHYMPML*MRLVRV
Trigger: GACCCTCACCAACCTCATTCACAACATGGGCATGTA...ATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp TGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATGTCAGGGACACGGTGTTaGGCACAAAATGGATCTGGT +
Preference number: 4 (lower is better)
Translates to: CVVHVQPRSPAHSMTNSMSGTRC*AQNGSG
Trigger: ACCAGATCCATTTTGTGCTCAACACCGTGTCCCTGA...CATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR GCA 90 bp GTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATGGAGTCTCTTACACCAGTCCTCTaGTGCTATGTGGCCCCATTC +
Preference number: 4 (lower is better)
Translates to: VHVQPRSPAHSMTNSMESLTPVL*CYVAPF
Trigger: GAATGGGGCCACATAGCAGCAGAGGACTGGTGTAAG...AGACTCCATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp AACCTAGGAATCACAGTGAAACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTACTCAGCAGCACGATGTaGAGGAGACCGATGGCCAGC +
Preference number: 4 (lower is better)
Translates to: NLGITVKQSRSRTALCSLLSSTM*RRPMAS
Trigger: GCTGGCCATCGGTCTCCTCCACATCGTGCTGCTGAG...TAGGGAGCAGAGGGCGGTACGGCTTCTGGATTGTTTCACTGTGATTCCTAGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CTGGCCCCCTCACCTCTGGAACCAAGCCATCTACACTCTACCCCATCTTTCCCCGGGGTTAAAGTGCTTTaGCTGCCTGAGGGCAAACAA +
Preference number: 4 (lower is better)
Translates to: LAPSPLEPSHLHSTPSFPGVKVL*LPEGKQ
Trigger: TTGTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCC...GGGGAAAGATGGGGTAGAGTGTAGATGGCTTGGTTCCAGAGGTGAGGGGGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp GCAGGGGTTAAAGTGCTTTGGCTGCCTGAGGGCAAACAAGTGAGCAGGGGTTTTAGTGCTTTGGCTGCCTaGGGGCAAACAAGTGAGCAG +
Preference number: 4 (lower is better)
Translates to: AGVKVLWLPEGKQVSRGFSALAA*GQTSEQ
Trigger: CTGCTCACTTGTTTGCCCTCAGGCAGCCAAAGCACT...AAAACCCCTGCTCACTTGTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR TCA 90 bp CCTAGGAATCACAGTGAAACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTATGTTCCTCTGTGCTGCTTaGGCAGGGATCCTACAGGAC +
Preference number: 4 (lower is better)
Translates to: PRNHSETIQKPYRPLLPMFLCAA*AGILQD
Trigger: GTCCTGTAGGATCCCTGCTCAAGCAGCACAGAGGAA...CATAGGGAGCAGAGGGCGGTACGGCTTCTGGATTGTTTCACTGTGATTCCTAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATTTCTGTCTTCAGTGTTaGAGCACATGCCTTTTACCC +
Preference number: 4 (lower is better)
Translates to: LLSQLRGPCSAQEPSPFHFCLQC*STCLLP
Trigger: GGGTAAAAGGCATGTGCTGCAACACTGAAGACAGAA...ATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp AGCTCCCTACCCAGAAAGGCAAAGACCCATCCCACACTTGCTTCCATACACAAAGCCTCCTGTCGCAACTaGGTGGTCCATGTTCAGCCC +
Preference number: 4 (lower is better)
Translates to: SSLPRKAKTHPTLASIHKASCRN*VVHVQP
Trigger: GGGCTGAACATGGACCACGCAGTTGCGACAGGAGGC...TTTGTGTATGGAAGCAAGTGTGGGATGGGTCTTTGCCTTTCTGGGTAGGGAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp GCAGGGGTTAAAGTGCTTTGGCTGCCTGAGGGCAAACAAGTGAGCAGGGGTTTTTTAACCCTCCAAGCCTaGTTCCCTCCCTGCCCACAT +
Preference number: 4 (lower is better)
Translates to: AGVKVLWLPEGKQVSRGFLTLQA*FPPCPH
Trigger: ATGTGGGCAGGGAGGGAAGCAGGCTTGGAGGGTTAA...AAAACCCCTGCTCACTTGTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGC
54% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp GCAGGGGTTAAAGTGCTTTGGCTGCCTGAGGGCAAACAAGTGAGCAGGGGTTTTCCCCTTCCTCTGTGCTaGTTGAGCAGGGATCCTACA +
Preference number: 4 (lower is better)
Translates to: AGVKVLWLPEGKQVSRGFPLPLC*LSRDPT
Trigger: TGTAGGATCCCTGCTCAAGCAGCACAGAGGAAGGGG...AAAACCCCTGCTCACTTGTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CCTAGGAATCACAGTGAAACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTATGCAAGCTACTCCAAGTTaGCTACTGGGGGAAGCGAGG +
Preference number: 4 (lower is better)
Translates to: PRNHSETIQKPYRPLLPMQATPS*LLGEAR
Trigger: CCTCGCTTCCCCCAGTAGCCAACTTGGAGTAGCTTG...CATAGGGAGCAGAGGGCGGTACGGCTTCTGGATTGTTTCACTGTGATTCCTAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp AACCTAGGAATCACAGTGAAACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTACCTGTCGCAACTGCGTaGTCCATGTTCAGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: NLGITVKQSRSRTALCSLPVATA*SMFSPG
Trigger: TCCTGGGCTGAACATGGACCACGCAGTTGCGACAGG...TAGGGAGCAGAGGGCGGTACGGCTTCTGGATTGTTTCACTGTGATTCCTAGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR TCA 90 bp AAACCTAGGAATCACAGTGAAACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTACTTCCGAGAGGCCGTaGACTGGACCCCATAATCCA +
Preference number: 4 (lower is better)
Translates to: KPRNHSETIQKPYRPLLPTSERP*TGPHNP
Trigger: TGGATTATGGGGTCCAGTTCACGGCCTCTCGGAAGT...AGGGAGCAGAGGGCGGTACGGCTTCTGGATTGTTTCACTGTGATTCCTAGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR GCA 90 bp ACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTCACTCACAAACGGGATaGTCAGCAGCACGATGTGGA +
Preference number: 4 (lower is better)
Translates to: TIQKPYRPLLPMQGLKCFHSQTG*SAARCG
Trigger: TCCACATCGTGCTGCTGAGCATCCCGTTTGTGAGTG...AAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTTCTGGATTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CAGAAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCTTCTGTCTTCAGTGTTaGAGCACATGCCTTTTACCC +
Preference number: 4 (lower is better)
Translates to: QKPYRPLLPMQGLKCFGCFCLQC*STCLLP
Trigger: GGGTAAAAGGCATGTGCTGCAACACTGAAGACAGAA...GCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp GGGTTTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGTGTTGAGCACAAAATaGATCTGGTCGTACTTAGTG +
Preference number: 4 (lower is better)
Translates to: GFFPWPPVATAWSMFSPGVLSTK*IWSYLV
Trigger: CACTAAGTACGACCAGATCCATTTTGTGCTCAACAC...TCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAAACCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CCA 90 bp GGAGTTAAACCCACAGCAGCCTCCCTCCCCTATTACTATCACATTCTGTGGGTAAGACCCCACATGGGGTaGCCTCACAACGCCACATGT +
Preference number: 4 (lower is better)
Translates to: GVKPTAASLPYYYHILWVRPHMG*PHNATC
Trigger: ACATGTGGCGTTGTGAGGCCACCCCATGTGGGGTCT...TACCCACAGAATGTGATAGTAATAGGGGAGGGAGGCTGCTGTGGGTTTAACTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp GCAGGGGTTAAAGTGCTTTGGCTGCCTGAGGGCAAACAAGTGAGCAGGGGTTTTTCAGGGACACGGTGTTaGGCACAAAATGGATCTGGT +
Preference number: 4 (lower is better)
Translates to: AGVKVLWLPEGKQVSRGFSGTRC*AQNGSG
Trigger: ACCAGATCCATTTTGTGCTCAACACCGTGTCCCTGA...AAAACCCCTGCTCACTTGTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR TCA 90 bp ACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTTCAGGGACACGGTGTTaGGCACAAAATGGATCTGGT +
Preference number: 4 (lower is better)
Translates to: TIQKPYRPLLPMQGLKCFSGTRC*AQNGSG
Trigger: ACCAGATCCATTTTGTGCTCAACACCGTGTCCCTGA...AAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTTCTGGATTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR GCA 90 bp CTATCACATTCTGTGGGTAAATTAACCCTCCAAGCCTGCTTCCCTCCCTGCCCAATGCAGGGGTTAAAGTaGTTTGGCTGCCTGAGGGCA +
Preference number: 4 (lower is better)
Translates to: LSHSVGKLTLQACFPPCPMQGLK*FGCLRA
Trigger: TGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGCAT...TGGGCAGGGAGGGAAGCAGGCTTGGAGGGTTAATTTACCCACAGAATGTGATAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp GGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCTGTTGCCCTTTTATTTaGGTTTCTCAGAATACTGTA +
Preference number: 4 (lower is better)
Translates to: GLLSQLRGPCSAQEPSPFCCPFI*VSQNTV
Trigger: TACAGTATTCTGAGAAACGCAAATAAAAGGGCAACA...GAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CCTAGGAATCACAGTGAAACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTATGGGGGTTAAAGTGCTTTaGCTGCCTGAGGGCAAACAA +
Preference number: 4 (lower is better)
Translates to: PRNHSETIQKPYRPLLPMGVKVL*LPEGKQ
Trigger: TTGTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCC...CATAGGGAGCAGAGGGCGGTACGGCTTCTGGATTGTTTCACTGTGATTCCTAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CCA 90 bp CAGAAAGGCAAAGACCCATCCCACACTTGCTTCCATACACAAAAGCACACACTGAACCAGGACCCACGGTaGGTTGCAGAGAAGCTGCCA +
Preference number: 4 (lower is better)
Translates to: QKGKDPSHTCFHTQKHTLNQDPR*VAEKLP
Trigger: TGGCAGCTTCTCTGCAACCCACCGTGGGTCCTGGTT...CAGTGTGTGCTTTTGTGTATGGAAGCAAGTGTGGGATGGGTCTTTGCCTTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp CCATCGTTTCTGTCACAGCTTCCCCATACCCCCGCAGGAGTCAGGGCCAAGTTGACTCTCAGTACTTATTaGTTCCAAAAATCCGGACTC +
Preference number: 4 (lower is better)
Translates to: PSFLSQLPHTPAGVRAKLTLSTY*FQKSGL
Trigger: GAGTCCGGATTTTTGGAATCAATAAGTACTGAGAGT...CAACTTGGCCCTGACTCCTGCGGGGGTATGGGGAAGCTGTGACAGAAACGATGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR TCA 90 bp CTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATACTCTCAGTACTTATTaGTTCCAAAAATCCGGACTC +
Preference number: 4 (lower is better)
Translates to: LRGPCSAQEPSPFHDQLHTLSTY*FQKSGL
Trigger: GAGTCCGGATTTTTGGAATCAATAAGTACTGAGAGT...ATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR GCA 90 bp ACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGACCCATCCCACACTTaGTTCCATACACAAAAGCAC +
Preference number: 4 (lower is better)
Translates to: TIQKPYRPLLPMQGLKCFDPSHT*FHTQKH
Trigger: GTGCTTTTGTGTATGGAAGCAAGTGTGGGATGGGTC...AAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTTCTGGATTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CACGTCTTGCCCCTTCCTCTGTGCTGCTTGAGCAGGGATCCTACAGGACTCTCAGTGTTGAGCACAAAATaGATCTGGTCGTACTTAGTG +
Preference number: 4 (lower is better)
Translates to: HVLPLPLCCLSRDPTGLSVLSTK*IWSYLV
Trigger: CACTAAGTACGACCAGATCCATTTTGTGCTCAACAC...TGAGAGTCCTGTAGGATCCCTGCTCAAGCAGCACAGAGGAAGGGGCAAGACGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp AAACCTAGGAATCACAGTGAAACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTGGGGTTAAAGTGCTTTaGCTGCCTGAGGGCAAACAA +
Preference number: 4 (lower is better)
Translates to: KPRNHSETIQKPYRPLLPGVKVL*LPEGKQ
Trigger: TTGTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCC...AGGGAGCAGAGGGCGGTACGGCTTCTGGATTGTTTCACTGTGATTCCTAGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR TCA 90 bp CCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATGGAGTCTCTACTCTCAGTACTTATTaGTTCCAAAAATCCGGACTC +
Preference number: 4 (lower is better)
Translates to: PCSAQEPSPFHDQLHGVSTLSTY*FQKSGL
Trigger: GAGTCCGGATTTTTGGAATCAATAAGTACTGAGAGT...AGAGACTCCATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR GCA 90 bp TACCCAGAAAGGCAAAGACCCATCCCACACTTGCTTCCATACACAAAAGCACACCACTCACAAACGGGATaGTCAGCAGCACGATGTGGA +
Preference number: 4 (lower is better)
Translates to: YPERQRPIPHLLPYTKAHHSQTG*SAARCG
Trigger: TCCACATCGTGCTGCTGAGCATCCCGTTTGTGAGTG...GTGTGCTTTTGTGTATGGAAGCAAGTGTGGGATGGGTCTTTGCCTTTCTGGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CAGAAAGGCAAAGACCCATCCCACACTTGCTTCCATACACAAAAGCACACACTGCAGTGTTGCAGCACATaGCTTTTACCCTACCCCTCC +
Preference number: 4 (lower is better)
Translates to: QKGKDPSHTCFHTQKHTLQCCST*LLPYPS
Trigger: GGAGGGGTAGGGTAAAAGGCATGTGCTGCAACACTG...CAGTGTGTGCTTTTGTGTATGGAAGCAAGTGTGGGATGGGTCTTTGCCTTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CCA 90 bp CAGAAAGGCAAAGACCCATCCCACACTTGCTTCCATACACAAAAGCACACACTGGTGTTGAGCACAAAATaGATCTGGTCGTACTTAGTG +
Preference number: 4 (lower is better)
Translates to: QKGKDPSHTCFHTQKHTLVLSTK*IWSYLV
Trigger: CACTAAGTACGACCAGATCCATTTTGTGCTCAACAC...CAGTGTGTGCTTTTGTGTATGGAAGCAAGTGTGGGATGGGTCTTTGCCTTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp AACCTAGGAATCACAGTGAAACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTATGTTGCCCTTTTATTTaGGTTTCTCAGAATACTGTA +
Preference number: 4 (lower is better)
Translates to: NLGITVKQSRSRTALCSLCCPFI*VSQNTV
Trigger: TACAGTATTCTGAGAAACGCAAATAAAAGGGCAACA...TAGGGAGCAGAGGGCGGTACGGCTTCTGGATTGTTTCACTGTGATTCCTAGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR GCA 90 bp CTATCACATTCTGTGGGTAAATTAACCCTCCAAGCCTGCTTCCCTCCCTGCCCAGAAACAGAAACATGTTaGCCTTTTATTTGCGTTTCT +
Preference number: 4 (lower is better)
Translates to: LSHSVGKLTLQACFPPCPETETC*PFICVS
Trigger: AGAAACGCAAATAAAAGGGCAACATGTTTCTGTTTC...TGGGCAGGGAGGGAAGCAGGCTTGGAGGGTTAATTTACCCACAGAATGTGATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579695.5
CDS GCA 90 bp CCGAAGATCAACGGCCCGGGAACGGTTCCCGGGAGCGGGGGCCGCTaGTGCTCCAGCAGCTGTAACAACCCGCGGCTGCAGCCTCCCCGC +
Preference number: 5 (lower is better)
Translates to: PKINGPGTVPGSGGR*CSSSCNNPRLQPPR
Trigger: GCGGGGAGGCTGCAGCCGCGGGTTGTTACAGCTGCTGGAGCAGCAGCGGCCCCCGCTCCCGGGAACCGTTCCCGGGCCGTTGATCTTCGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS GCA 90 bp AAGATCAACGGCCCGGGAACGGTTCCCGGGAGCGGGGGCCGCTGCTaGTCCAGCAGCTGTAACAACCCGCGGCTGCAGCCTCCCCGCTGG +
Preference number: 5 (lower is better)
Translates to: KINGPGTVPGSGGRC*SSSCNNPRLQPPRW
Trigger: CCAGCGGGGAGGCTGCAGCCGCGGGTTGTTACAGCTGCTGGAGCAGCAGCGGCCCCCGCTCCCGGGAACCGTTCCCGGGCCGTTGATCTT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp CCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCACCTCTCCCGTTCCCTaGGACCCCTGGAAGAGGACA +
Preference number: 5 (lower is better)
Translates to: PWPPVATAWSMFSPGAQPTSPVP*DPWKRT
Trigger: TGTCCTCTTCCAGGGGTCCAAGGGAACGGGAGAGGT...GGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp TTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCGTTAGCAGCCTCGCCTaGCCCTGGTCCGGGGTCTCA +
Preference number: 5 (lower is better)
Translates to: FSPGLLSQLRGPCSAQEPVSSLA*PWSGVS
Trigger: TGAGACCCCGGACCAGGGCAAGGCGAGGCTGCTAAC...GGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CAA 90 bp TCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCTGGAGCTGGGGCAGCTaGGGGATAAGCACGCTCATC +
Preference number: 5 (lower is better)
Translates to: SPGLLSQLRGPCSAQEPSWSWGS*GISTLI
Trigger: GATGAGCGTGCTTATCCCCAAGCTGCCCCAGCTCCA...GCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CAA 90 bp CTCTCACCACAGACCCCACATGGGGTGGCCTCACAACGCCACATGTGGCTGCCACCTACAGGCCACGTCTaGCCCCTTCCTCTGTGCTGC +
Preference number: 5 (lower is better)
Translates to: LSPQTPHGVASQRHMWLPPTGHV*PLPLCC
Trigger: GCAGCACAGAGGAAGGGGCAAGACGTGGCCTGTAGG...TGGCAGCCACATGTGGCGTTGTGAGGCCACCCCATGTGGGGTCTGTGGTGAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS TCA 90 bp CCCAACAAGCAAACACCCGTGCGCCAGCCTGGGGCGCATTCTGATTaGAGAGATGCTCCTGGGACCCATCAGCGCAGCCCACTAGGCTGG +
Preference number: 5 (lower is better)
Translates to: PNKQTPVRQPGAHSD*RDAPGTHQRSPLGW
Trigger: CCAGCCTAGTGGGCTGCGCTGATGGGTCCCAGGAGCATCTCTTCAATCAGAATGCGCCCCAGGCTGGCGCACGGGTGTTTGCTTGTTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394169.5
CDS-3UTR CAA 90 bp CCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCAACCTCTCCCGTTCCCTaGGACCCCTGGAAGAGGACA +
Preference number: 5 (lower is better)
Translates to: PPVATAWSMFSPGAQPIPTSPVP*DPWKRT
Trigger: TGTCCTCTTCCAGGGGTCCAAGGGAACGGGAGAGGT...TGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS GCA 90 bp CCCACCCTCTTGGCTCCACATACAAATATCCGGGCCCAGCCAGTATaGCAGACACTCAAGCCAAGGCTGAGCACCACCAGGGCAGCCACC +
Preference number: 5 (lower is better)
Translates to: PTLLAPHTNIRAQPV*QTLKPRLSTTRAAT
Trigger: GGTGGCTGCCCTGGTGGTGCTCAGCCTTGGCTTGAGTGTCTGGCATACTGGCTGGGCCCGGATATTTGTATGTGGAGCCAAGAGGGTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000394169.5
CDS-3UTR CAA 90 bp CCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATCAGGGACACGGTGTaGAGCACAAAATGGATCTGG +
Preference number: 5 (lower is better)
Translates to: PWPPVATAWSMFSPGAQPIRDTV*STKWIW
Trigger: CCAGATCCATTTTGTGCTCAACACCGTGTCCCTGAT...GGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CAA 90 bp CAGGCTGAGACAGTGCCTACAGGCCACGTCTTGCCCCTTCCTCTGTGCTGCTTGTGGAGCTGGGGCAGCTaGGGGATAAGCACGCTCATC +
Preference number: 5 (lower is better)
Translates to: QAETVPTGHVLPLPLCCLWSWGS*GISTLI
Trigger: GATGAGCGTGCTTATCCCCAAGCTGCCCCAGCTCCA...CAAGCAGCACAGAGGAAGGGGCAAGACGTGGCCTGTAGGCACTGTCTCAGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp TGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATGCCTACAGGCCACGTCTaGCCCCTTCCTCTGTGCTGC +
Preference number: 5 (lower is better)
Translates to: CVVHVQPRSPAHSMTNSMPTGHV*PLPLCC
Trigger: GCAGCACAGAGGAAGGGGCAAGACGTGGCCTGTAGG...CATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp CCATCGTTTCTGTCACAGCTTCCCCATACCCCCGCAGGAGTCAGGGCCAAGTTGTTCATCACCCGCGTGTaGGGGTTCACCTCGCTGTGC +
Preference number: 5 (lower is better)
Translates to: PSFLSQLPHTPAGVRAKLFITRV*GFTSLC
Trigger: GCACAGCGAGGTGAACCCCAACACGCGGGTGATGAA...CAACTTGGCCCTGACTCCTGCGGGGGTATGGGGAAGCTGTGACAGAAACGATGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp AAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTGTTCATCACCCGCGTGTaGGGGTTCACCTCGCTGTGC +
Preference number: 5 (lower is better)
Translates to: KPYRPLLPMQGLKCFGCLFITRV*GFTSLC
Trigger: GCACAGCGAGGTGAACCCCAACACGCGGGTGATGAA...CAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp ACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGTTAGCAGCCTCGCCTaGCCCTGGTCCGGGGTCTCA +
Preference number: 5 (lower is better)
Translates to: TIQKPYRPLLPMQGLKCFVSSLA*PWSGVS
Trigger: TGAGACCCCGGACCAGGGCAAGGCGAGGCTGCTAAC...AAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTTCTGGATTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CAA 90 bp GCAGGGGTTAAAGTGCTTTGGCTGCCTGAGGGCAAACAAGTGAGCAGGGGTTTTGTTAGCAGCCTCGCCTaGCCCTGGTCCGGGGTCTCA +
Preference number: 5 (lower is better)
Translates to: AGVKVLWLPEGKQVSRGFVSSLA*PWSGVS
Trigger: TGAGACCCCGGACCAGGGCAAGGCGAGGCTGCTAAC...AAAACCCCTGCTCACTTGTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CAA 90 bp CTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATAGGACCCACGGTGGGTaGCAGAGAAGCTGCCAAAAG +
Preference number: 5 (lower is better)
Translates to: LRGPCSAQEPSPFHDQLHRTHGG*QRSCQK
Trigger: CTTTTGGCAGCTTCTCTGCAACCCACCGTGGGTCCT...ATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS GCA 90 bp CAGTCTCCCCTCTCAGCACCTGTTTCCAGGTGTATATTAGCACCATaGCTTCCCCTGCCCAGCACCAACGGTAGGAGTCCTGCAGCAGGA +
Preference number: 5 (lower is better)
Translates to: QSPLSAPVSRCILAP*LPLPSTNGRSPAAG
Trigger: TCCTGCTGCAGGACTCCTACCGTTGGTGCTGGGCAGGGGAAGGCATGGTGCTAATATACACCTGGAAACAGGTGCTGAGAGGGGAGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394169.5
CDS-3UTR CAA 90 bp CAGAAGCCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCACAAGCTACTCCAAGTaGGCTACTGGGGGAAGCGAG +
Preference number: 5 (lower is better)
Translates to: QKPYRPLLPMQGLKCFGCTSYSK*ATGGSE
Trigger: CTCGCTTCCCCCAGTAGCCAACTTGGAGTAGCTTGT...GCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGGCTTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp GGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCAGACCCATCCCACACTaGCTTCCATACACAAAAGCA +
Preference number: 5 (lower is better)
Translates to: GLLSQLRGPCSAQEPSPFRPIPH*LPYTKA
Trigger: TGCTTTTGTGTATGGAAGCAAGTGTGGGATGGGTCT...GAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp CAGGCTGAGACAGTGCCTACAGGCCACGTCTTGCCCCTTCCTCTGTGCTGCTTGATCAGGGACACGGTGTaGAGCACAAAATGGATCTGG +
Preference number: 5 (lower is better)
Translates to: QAETVPTGHVLPLPLCCLIRDTV*STKWIW
Trigger: CCAGATCCATTTTGTGCTCAACACCGTGTCCCTGAT...CAAGCAGCACAGAGGAAGGGGCAAGACGTGGCCTGTAGGCACTGTCTCAGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp GTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATGACCAACTCCATGGAGTCTACAAGCTACTCCAAGTaGGCTACTGGGGGAAGCGAG +
Preference number: 5 (lower is better)
Translates to: VHVQPRSPAHSMTNSMESTSYSK*ATGGSE
Trigger: CTCGCTTCCCCCAGTAGCCAACTTGGAGTAGCTTGT...AGACTCCATGGAGTTGGTCATGGAATGGGCTGGGCTCCTGGGCTGAACATGGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS GCA 90 bp AGAAAATGTGACCCACAACACGCCATCCCAACAAGCAAACACCCGTaGGCCAGCCTGGGGCGCATTCTGATTGAAGAGATGCTCCTGGGA +
Preference number: 5 (lower is better)
Translates to: RKCDPQHAIPTSKHP*ASLGRILIEEMLLG
Trigger: TCCCAGGAGCATCTCTTCAATCAGAATGCGCCCCAGGCTGGCGCACGGGTGTTTGCTTGTTGGGATGGCGTGTTGTGGGTCACATTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394169.5
CDS CCA 90 bp CTAGAAAGCCAGAGCTGGCTCAGATTGTTTATCTTCCCAGGGCCTTaGGGCTTCAGTTACTCTAGCAGCCCCTGGGACAGCTGCTACGCA +
Preference number: 5 (lower is better)
Translates to: LESQSWLRLFIFPGP*GFSYSSSPWDSCYA
Trigger: TGCGTAGCAGCTGTCCCAGGGGCTGCTAGAGTAACTGAAGCCCCAAGGCCCTGGGAAGATAAACAATCTGAGCCAGCTCTGGCTTTCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000394169.5
ENST00000582052.1
CDS-3UTR CAA 90 bp CTATCACATTCTGTGGGTAAATTAACCCTCCAAGCCTGCTTCCCTCCCTGCCCATGGAGCTGGGGCAGCTaGGGGATAAGCACGCTCATC +
Preference number: 5 (lower is better)
Translates to: LSHSVGKLTLQACFPPCPWSWGS*GISTLI
Trigger: GATGAGCGTGCTTATCCCCAAGCTGCCCCAGCTCCA...TGGGCAGGGAGGGAAGCAGGCTTGGAGGGTTAATTTACCCACAGAATGTGATAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp GCAGGGGTTAAAGTGCTTTGGCTGCCTGAGGGCAAACAAGTGAGCAGGGGTTTTAGGACCCACGGTGGGTaGCAGAGAAGCTGCCAAAAG +
Preference number: 5 (lower is better)
Translates to: AGVKVLWLPEGKQVSRGFRTHGG*QRSCQK
Trigger: CTTTTGGCAGCTTCTCTGCAACCCACCGTGGGTCCT...AAAACCCCTGCTCACTTGTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp ACCCATCGTTTCTGTCACAGCTTCCCCATACCCCCGCAGGAGTCAGGGCCAAGTACATCCCAAAGGAGATaGGGTCTAGCTTCTGTCCCT +
Preference number: 5 (lower is better)
Translates to: THRFCHSFPIPPQESGPSTSQRR*GLASVP
Trigger: AGGGACAGAAGCTAGACCCAATCTCCTTTGGGATGT...ACTTGGCCCTGACTCCTGCGGGGGTATGGGGAAGCTGTGACAGAAACGATGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp CAGGCTGAGACAGTGCCTACAGGCCACGTCTTGCCCCTTCCTCTGTGCTGCTTGTTTCTGTCTTCAGTGTaGCAGCACATGCCTTTTACC +
Preference number: 5 (lower is better)
Translates to: QAETVPTGHVLPLPLCCLFLSSV*QHMPFT
Trigger: GGTAAAAGGCATGTGCTGCAACACTGAAGACAGAAA...CAAGCAGCACAGAGGAAGGGGCAAGACGTGGCCTGTAGGCACTGTCTCAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp CCGTACCGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTGAGGTTTCTGTCTTCAGTGTaGCAGCACATGCCTTTTACC +
Preference number: 5 (lower is better)
Translates to: PYRPLLPMQGLKCFGCLRFLSSV*QHMPFT
Trigger: GGTAAAAGGCATGTGCTGCAACACTGAAGACAGAAA...CCTCAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCGGTACGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp ACCCATCGTTTCTGTCACAGCTTCCCCATACCCCCGCAGGAGTCAGGGCCAAGTAGACCCATCCCACACTaGCTTCCATACACAAAAGCA +
Preference number: 5 (lower is better)
Translates to: THRFCHSFPIPPQESGPSRPIPH*LPYTKA
Trigger: TGCTTTTGTGTATGGAAGCAAGTGTGGGATGGGTCT...ACTTGGCCCTGACTCCTGCGGGGGTATGGGGAAGCTGTGACAGAAACGATGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS TCA 90 bp TCCTCTTCTCAGACAGCTCCAAGCTTAGAGACCTCAGAGAAAATGTaGCCCACAACACGCCATCCCAACAAGCAAACACCCGTGCGCCAG +
Preference number: 5 (lower is better)
Translates to: SSSQTAPSLETSEKM*PTTRHPNKQTPVRQ
Trigger: CTGGCGCACGGGTGTTTGCTTGTTGGGATGGCGTGTTGTGGGTCACATTTTCTCTGAGGTCTCTAAGCTTGGAGCTGTCTGAGAAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394169.5
CDS CCA 90 bp CACTCTCAGTACTTATTGATTCCAAAAATCCGGACTCCGTGGAGCTaGGGCAGCTTGGGGATAAGCACGCTCATCAGGGACACGGTGTTG +
Preference number: 5 (lower is better)
Translates to: HSQYLLIPKIRTPWS*GSLGISTLIRDTVL
Trigger: CAACACCGTGTCCCTGATGAGCGTGCTTATCCCCAAGCTGCCCCAGCTCCACGGAGTCCGGATTTTTGGAATCAATAAGTACTGAGAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000304046.7
ENST00000394169.5
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CAA 90 bp CTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCAGCCCATTCCATCACTCTCAGTACTTATaGATTCCAAAAATCCGGACT +
Preference number: 5 (lower is better)
Translates to: LLSQLRGPCSAQEPSPFHHSQYL*IPKIRT
Trigger: AGTCCGGATTTTTGGAATCAATAAGTACTGAGAGTG...ATGGAATGGGCTGGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CAA 90 bp GGGTTTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGACACTCTCAGTACTTATaGATTCCAAAAATCCGGACT +
Preference number: 5 (lower is better)
Translates to: GFFPWPPVATAWSMFSPGHSQYL*IPKIRT
Trigger: AGTCCGGATTTTTGGAATCAATAAGTACTGAGAGTG...TCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAAACCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CAA 90 bp TTTTCCCCTGGCCTCCTGTCGCAACTGCGTGGTCCATGTTCAGCCCAGGAGCCCATGTTGCCCTTTTATTaGCGTTTCTCAGAATACTGT +
Preference number: 5 (lower is better)
Translates to: FSPGLLSQLRGPCSAQEPMLPFY*RFSEYC
Trigger: ACAGTATTCTGAGAAACGCAAATAAAAGGGCAACAT...GGGCTCCTGGGCTGAACATGGACCACGCAGTTGCGACAGGAGGCCAGGGGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp CGCCCTCTGCTCCCTATGCAGGGGTTAAAGTGCTTTGGCTGCCTGAGGGCAAACCACTCTCAGTACTTATaGATTCCAAAAATCCGGACT +
Preference number: 5 (lower is better)
Translates to: RPLLPMQGLKCFGCLRANHSQYL*IPKIRT
Trigger: AGTCCGGATTTTTGGAATCAATAAGTACTGAGAGTG...GTTTGCCCTCAGGCAGCCAAAGCACTTTAACCCCTGCATAGGGAGCAGAGGGCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000304046.7
ENST00000579695.5
ENST00000581284.5
CDS-3UTR CAA 90 bp AACCTAGGAATCACAGTGAAACAATCCAGAAGCCGTACCGCCCTCTGCTCCCTAACATCCCAAAGGAGATaGGGTCTAGCTTCTGTCCCT +
Preference number: 5 (lower is better)
Translates to: NLGITVKQSRSRTALCSLTSQRR*GLASVP
Trigger: AGGGACAGAAGCTAGACCCAATCTCCTTTGGGATGT...TAGGGAGCAGAGGGCGGTACGGCTTCTGGATTGTTTCACTGTGATTCCTAGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp CTGGCCCCCTCACCTCTGGAACCAAGCCATCTACACTCTACCCCATCTTTCCCCATGTTGCCCTTTTATTaGCGTTTCTCAGAATACTGT +
Preference number: 5 (lower is better)
Translates to: LAPSPLEPSHLHSTPSFPMLPFY*RFSEYC
Trigger: ACAGTATTCTGAGAAACGCAAATAAAAGGGCAACAT...GGGGAAAGATGGGGTAGAGTGTAGATGGCTTGGTTCCAGAGGTGAGGGGGCCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS-3UTR CAA 90 bp TACCCAGAAAGGCAAAGACCCATCCCACACTTGCTTCCATACACAAAAGCACACATCAGGGACACGGTGTaGAGCACAAAATGGATCTGG +
Preference number: 5 (lower is better)
Translates to: YPERQRPIPHLLPYTKAHIRDTV*STKWIW
Trigger: CCAGATCCATTTTGTGCTCAACACCGTGTCCCTGAT...GTGTGCTTTTGTGTATGGAAGCAAGTGTGGGATGGGTCTTTGCCTTTCTGGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS GCA 72 bp GGCCCGGGAACGGTTCCCGGGAGCGGGGGCCGCTGCTaGTCCAGCAGCTGTAACAACCCGCGGCTGCAGCCT +
Preference number: 6 (lower is better)
Translates to: GPGTVPGSGGRC*SSSCNNPRLQP
Trigger: AGGCTGCAGCCGCGGGTTGTTACAGCTGCTGGAGCAGCAGCGGCCCCCGCTCCCGGGAACCGTTCCCGGGCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS GCA 72 bp AACGGCCCGGGAACGGTTCCCGGGAGCGGGGGCCGCTaGTGCTCCAGCAGCTGTAACAACCCGCGGCTGCAG +
Preference number: 6 (lower is better)
Translates to: NGPGTVPGSGGR*CSSSCNNPRLQ
Trigger: CTGCAGCCGCGGGTTGTTACAGCTGCTGGAGCAGCAGCGGCCCCCGCTCCCGGGAACCGTTCCCGGGCCGTT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304046.7
ENST00000579695.5
CDS GCA 72 bp TCACCTCGCTGTGCGCTGTGCCCACATTCATCCTGCTaGCCCTCTCTGCGTGTGGGGCCGAAGATCAACGGC +
Preference number: 6 (lower is better)
Translates to: SPRCALCPHSSC*PSLRVGPKING
Trigger: GCCGTTGATCTTCGGCCCCACACGCAGAGAGGGGCAGCAGGATGAATGTGGGCACAGCGCACAGCGAGGTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579695.5
CDS TCA 72 bp CAAACACCCGTGCGCCAGCCTGGGGCGCATTCTGATTaGAGAGATGCTCCTGGGACCCATCAGCGCAGCCCA +
Preference number: 6 (lower is better)
Translates to: QTPVRQPGAHSD*RDAPGTHQRSP
Trigger: TGGGCTGCGCTGATGGGTCCCAGGAGCATCTCTTCAATCAGAATGCGCCCCAGGCTGGCGCACGGGTGTTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394169.5
CDS CCA 72 bp ACGGGATGCTCAGCAGCACGATGTGGAGGAGACCGATaGCCAGCACGTAGGAGAGCCAGATGCCACGGCTGT +
Preference number: 6 (lower is better)
Translates to: TGCSAARCGGDR*PARRRARCHGC
Trigger: ACAGCCGTGGCATCTGGCTCTCCTACGTGCTGGCCATCGGTCTCCTCCACATCGTGCTGCTGAGCATCCCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000304046.7
ENST00000394169.5
ENST00000579695.5
ENST00000584000.1
ENST00000584220.5
CDS GCA 72 bp TCACCTCGCTGTGCGCTGTGCCCACATTCATCCTGCTaGCCCTCTCTGCTGTTCGTGTGGGGCCGAAGATCA +
Preference number: 6 (lower is better)
Translates to: SPRCALCPHSSC*PSLLFVWGRRS
Trigger: TGATCTTCGGCCCCACACGAACAGCAGAGAGGGGCAGCAGGATGAATGTGGGCACAGCGCACAGCGAGGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000304046.7
CDS GCA 72 bp GACCCACAACACGCCATCCCAACAAGCAAACACCCGTaGGCCAGCCTGGGGCGCATTCTGATTGAAGAGATG +
Preference number: 6 (lower is better)
Translates to: DPQHAIPTSKHP*ASLGRILIEEM
Trigger: CATCTCTTCAATCAGAATGCGCCCCAGGCTGGCGCACGGGTGTTTGCTTGTTGGGATGGCGTGTTGTGGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394169.5
CDS CCA 72 bp CAGAGCTGGCTCAGATTGTTTATCTTCCCAGGGCCTTaGGGCTTCAGTTACTCTAGCAGCCCCTGGGACAGC +
Preference number: 6 (lower is better)
Translates to: QSWLRLFIFPGP*GFSYSSSPWDS
Trigger: GCTGTCCCAGGGGCTGCTAGAGTAACTGAAGCCCCAAGGCCCTGGGAAGATAAACAATCTGAGCCAGCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000394169.5
ENST00000582052.1
CDS GCA 72 bp CTCTCAGCACCTGTTTCCAGGTGTATATTAGCACCATaGCTTCCCCTGCCCAGCACCAACGGTAGGAGTCCT +
Preference number: 6 (lower is better)
Translates to: LSAPVSRCILAP*LPLPSTNGRSP
Trigger: AGGACTCCTACCGTTGGTGCTGGGCAGGGGAAGGCATGGTGCTAATATACACCTGGAAACAGGTGCTGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394169.5
CDS CCA 72 bp CCCTTCCTAGTATTTGTCCAGGAGTGCCAAAAGCCTTaGGGAATCCCAGATCACAGGACCCCATACGCCTTT +
Preference number: 6 (lower is better)
Translates to: PFLVFVQECQKP*GIPDHRTPYAF
Trigger: AAAGGCGTATGGGGTCCTGTGATCTGGGATTCCCCAAGGCTTTTGGCACTCCTGGACAAATACTAGGAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000394169.5
ENST00000582052.1
CDS TCA 72 bp AAACTAACAAAAAGACTGGCAATGAGGAAACACTCTTaGGACTTTCGTGTGACTATGGATACATATCACTTC +
Preference number: 6 (lower is better)
Translates to: KLTKRLAMRKHS*DFRVTMDTYHF
Trigger: GAAGTGATATGTATCCATAGTCACACGAAAGTCTCAAGAGTGTTTCCTCATTGCCAGTCTTTTTGTTAGTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394169.5