Pregenerated sensors for OR6Q1 (Homo sapiens)

Ensembl gene IDs: ENSG00000279051

Ensembl transcript IDs: ENST00000302622.4

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CATAAAATGTTAGCTGAGACAAGAGGTAGATTGGCAAGATGGGTGTaGGGAAACCTACCAGCCAACAGGCAGCTGCCAGACGGATGCAGG	+
Preference number: 5 (lower is better) Translates to: HKMLAETRGRLARWV*GNLPANRQLPDGCR Trigger: CCTGCATCCGTCTGGCAGCTGCCTGTTGGCTGGTAGGTTTCCTCACACCCATCTTGCCAATCTACCTCTTGTCTCAGCTAACATTTTATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000302622.4
CDS GCA 72 bp	CTACCAGCCAACAGGCAGCTGCCAGACGGATGCAGGTaGCCCAGGACACAAAAGCCCCATAGTGGAGAGGCA	+
Preference number: 6 (lower is better) Translates to: LPANRQLPDGCR*PRTQKPHSGEA Trigger: TGCCTCTCCACTATGGGGCTTTTGTGTCCTGGGGCACCTGCATCCGTCTGGCAGCTGCCTGTTGGCTGGTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000302622.4
CDS GCA 72 bp	GATGGGTGTGAGGAAACCTACCAGCCAACAGGCAGCTaGCAGACGGATGCAGGTGCCCCAGGACACAAAAGC	+
Preference number: 6 (lower is better) Translates to: DGCEETYQPTGS*QTDAGAPGHKS Trigger: GCTTTTGTGTCCTGGGGCACCTGCATCCGTCTGGCAGCTGCCTGTTGGCTGGTAGGTTTCCTCACACCCATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000302622.4
CDS TCA 72 bp	CCAGAGACACCAGGAAATCCACAGTCTCCTTCCAAGTaGCATCTGAGCACGACAAGGCTAGCAAGGGTGAGG	+
Preference number: 6 (lower is better) Translates to: PETPGNPQSPSK*HLSTTRLARVR Trigger: CCTCACCCTTGCTAGCCTTGTCGTGCTCAGATGTCACTTGGAAGGAGACTGTGGATTTCCTGGTGTCTCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000302622.4
CDS TCA 72 bp	TTAGCTGAGACAAGAGGTAGATTGGCAAGATGGGTGTaGGGAAACCTACCAGCCAACAGGCAGCTGCCAGAC	+
Preference number: 6 (lower is better) Translates to: LAETRGRLARWV*GNLPANRQLPD Trigger: GTCTGGCAGCTGCCTGTTGGCTGGTAGGTTTCCTCACACCCATCTTGCCAATCTACCTCTTGTCTCAGCTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000302622.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu