Pregenerated sensors for OR1F12 (Homo sapiens)

Ensembl gene IDs: ENSG00000220721

Ensembl transcript IDs: ENST00000402365.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CATAAGAGTGTGCAAGAGAGGGTTCAAAATGGCAATGACCCAAGGTaGAGCTACCAGAGAGGCACAGAGGCGCAGGGCCATAATGGTGGA	+
Preference number: 5 (lower is better) Translates to: HKSVQERVQNGNDPR*SYQRGTEAQGHNGG Trigger: TCCACCATTATGGCCCTGCGCCTCTGTGCCTCTCTGGTAGCTGCACCTTGGGTCATTGCCATTTTGAACCCTCTCTTGCACACTCTTATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000402365.2
CDS TCA 90 bp	GAAGGTACCACAAAGATCAGCCCCACCGTAGCCAGAACACTCAACTaGTTAAGACTGGTGTCGGAACAGGACAGAGGGAGGAGAGAGTTG	+
Preference number: 5 (lower is better) Translates to: EGTTKISPTVARTLN*LRLVSEQDRGRREL Trigger: CAACTCTCTCCTCCCTCTGTCCTGTTCCGACACCAGTCTTAATCAGTTGAGTGTTCTGGCTACGGTGGGGCTGATCTTTGTGGTACCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000402365.2
CDS TCA 90 bp	CATCACAGCAGAAACAATGAGGATATAGGATACCAGGATACACACTaGAGGTACCACAAAGATCAGCCCCACCGTAGCCAGAACACTCAA	+
Preference number: 5 (lower is better) Translates to: HHSRNNEDIGYQDTH*RYHKDQPHRSQNTQ Trigger: TTGAGTGTTCTGGCTACGGTGGGGCTGATCTTTGTGGTACCTTCAGTGTGTATCCTGGTATCCTATATCCTCATTGTTTCTGCTGTGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000402365.2
CDS TCA 72 bp	ACAAAGATCAGCCCCACCGTAGCCAGAACACTCAACTaGTTAAGACTGGTGTCGGAACAGGACAGAGGGAGG	+
Preference number: 6 (lower is better) Translates to: TKISPTVARTLN*LRLVSEQDRGR Trigger: CCTCCCTCTGTCCTGTTCCGACACCAGTCTTAATCAGTTGAGTGTTCTGGCTACGGTGGGGCTGATCTTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000402365.2
CDS GCA 72 bp	CACAGGAAAAGTGCAAAGAGTAGCACCTGCTGTTGTTaGCAACTTGAGAAGCCCAGGAGGAGAAATTCAGAG	+
Preference number: 6 (lower is better) Translates to: HRKSAKSSTCCC*QLEKPRRRNSE Trigger: CTCTGAATTTCTCCTCCTGGGCTTCTCAAGTTGGCAACAACAGCAGGTGCTACTCTTTGCACTTTTCCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000402365.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu