RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OR10J1 (Homo sapiens)

Ensembl gene IDs: ENSG00000196184

Ensembl transcript IDs: ENST00000423932.6, ENST00000641630.1, ENST00000642080.1

Found 135 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATTCTTCCCTTGGTGCTCATCTGTATCTCAAACCCCAAATCTACATaGCAGTCCTGGGACAGCCTCCACTCCATGTTCTCTATGACAGTC +
Preference number: 1 (lower is better)
Translates to: ILPLVLICISNPKST*QSWDSLHSMFSMTV
Trigger: GACTGTCATAGAGAACATGGAGTGGAGGCTGTCCCAGGACTGTCATGTAGATTTGGGGTTTGAGATACAGATGAGCACCAAGGGAAGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
3UTR TCA 90 bp TTTGCCTCTTATTTAAGGGGCAGGTCTCTAGGAGCCAAGTGTTTGTaGGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCC +
Preference number: 1 (lower is better)
Translates to: FASYLRGRSLGAKCL*VYTSYSCLVWMLTA
Trigger: GGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCTAGAGACCTGCCCCTTAAATAAGAGGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
3UTR GCA 90 bp TTAAAGCTTCAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTaGCTCTTATTTAAGGGGCAGGTCTCTAGGAGCCAAGTGTTTGTG +
Preference number: 1 (lower is better)
Translates to: LKLQTPSCMKLLFLF*LLFKGQVSRSQVFV
Trigger: CACAAACACTTGGCTCCTAGAGACCTGCCCCTTAAATAAGAGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGCTTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
3UTR CCA 90 bp GACCTTGTTAATCCTGAAAAATGCCCTAGTAGTTCTATTATGGTCTaGAATGCAGATACATGTGTCCTTTGGATCTCGGCTGTTTTGTTT +
Preference number: 1 (lower is better)
Translates to: DLVNPEKCPSSSIMV*NADTCVLWISAVLF
Trigger: AAACAAAACAGCCGAGATCCAAAGGACACATGTATCTGCATTCCAGACCATAATAGAACTACTAGGGCATTTTTCAGGATTAACAAGGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000642080.1
3UTR GCA 90 bp GAGTCAGCACAACTGAATCATTTTTCGTTACCTGATCAGTCCTTTTaGTTTCATACCTGTAGCTACATTGTTTCTTCTCTTTGGAATTCT +
Preference number: 1 (lower is better)
Translates to: ESAQLNHFSLPDQSF*FHTCSYIVSSLWNS
Trigger: AGAATTCCAAAGAGAAGAAACAATGTAGCTACAGGTATGAAAGCAAAAGGACTGATCAGGTAACGAAAAATGATTCAGTTGTGCTGACTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000642080.1
3UTR CAA 90 bp GAGACCATACTGCCACCAGGTCTGAGGCCCAGCCTAGTCACTGATTaGACAGCAAATCCTTATTCTTCCCTTGGTGCTCATCTGTATCTC +
Preference number: 2 (lower is better)
Translates to: ETILPPGLRPSLVTD*TANPYSSLGAHLYL
Trigger: GAGATACAGATGAGCACCAAGGGAAGAATAAGGATTTGCTGTCAAATCAGTGACTAGGCTGGGCCTCAGACCTGGTGGCAGTATGGTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
3UTR CAA 90 bp TCTGGAATGCAGATACATGTGTCCTTTGGATCTCGGCTGTTTTGTTaGTTTGTTCGTTCAAAGGCTTTTCTGATTAAAGAGTCCACACTT +
Preference number: 2 (lower is better)
Translates to: SGMQIHVSFGSRLFC*FVRSKAFLIKESTL
Trigger: AAGTGTGGACTCTTTAATCAGAAAAGCCTTTGAACGAACAAACAAACAAAACAGCCGAGATCCAAAGGACACATGTATCTGCATTCCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000642080.1
3UTR-3UTR GCA 90 bp TTTAAAGCTTCAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTGCCTCTTTACACCTCATATTCCTaGCTAGTGTGGATGTTGACA +
Preference number: 2 (lower is better)
Translates to: FKASDSQLYETAIPLLPLYTSYS*LVWMLT
Trigger: TGTCAACATCCACACTAGGCAGGAATATGAGGTGTA...AAGAGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGCTTTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
3UTR-3UTR CCA 90 bp CCAGGAGTATCTCAGATTATGCCCTCAAAACACTGTCATGATGACTGTAGAATTATTGCCTTCATTAGGTaGAGATTCACAAAGAAACCA +
Preference number: 2 (lower is better)
Translates to: PGVSQIMPSKHCHDDCRIIAFIR*RFTKKP
Trigger: TGGTTTCTTTGTGAATCTCCACCTAATGAAGGCAAT...AATTCTACAGTCATCATGACAGTGTTTTGAGGGCATAATCTGAGATACTCCTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
3UTR-3UTR TCA 90 bp AAACTGAATCCTAGTTCTCCTAAGTCCTGGGTAGTTCCCATATTTAAAAGTAAATCATTTTTCGTTACCTaGTCAGTCCTTTTGCTTTCA +
Preference number: 2 (lower is better)
Translates to: KLNPSSPKSWVVPIFKSKSFFVT*SVLLLS
Trigger: TGAAAGCAAAAGGACTGATCAGGTAACGAAAAATGA...TTTACTTTTAAATATGGGAACTACCCAGGACTTAGGAGAACTAGGATTCAGTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000642080.1
3UTR TCA 72 bp AGAGTCCACACTTTCAGCCTAGTAGAAAGTGTGCCCTaGGACCATACTGCCACCAGGTCTGAGGCCCAGCCT +
Preference number: 3 (lower is better)
Translates to: RVHTFSLVESVP*DHTATRSEAQP
Trigger: AGGCTGGGCCTCAGACCTGGTGGCAGTATGGTCTCAGGGCACACTTTCTACTAGGCTGAAAGTGTGGACTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
3UTR TCA 72 bp CATACTGCCACCAGGTCTGAGGCCCAGCCTAGTCACTaGTTTGACAGCAAATCCTTATTCTTCCCTTGGTGC +
Preference number: 3 (lower is better)
Translates to: HTATRSEAQPSH*FDSKSLFFPWC
Trigger: GCACCAAGGGAAGAATAAGGATTTGCTGTCAAATCAGTGACTAGGCTGGGCCTCAGACCTGGTGGCAGTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
3UTR TCA 72 bp TTGGTGCTCATCTGTATCTCAAACCCCAAATCTACATaGCAGTCCTGGGACAGCCTCCACTCCATGTTCTCT +
Preference number: 3 (lower is better)
Translates to: LVLICISNPKST*QSWDSLHSMFS
Trigger: AGAGAACATGGAGTGGAGGCTGTCCCAGGACTGTCATGTAGATTTGGGGTTTGAGATACAGATGAGCACCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
3UTR TCA 72 bp TATTTAAGGGGCAGGTCTCTAGGAGCCAAGTGTTTGTaGGTTTACACCTCATATTCCTGCCTAGTGTGGATG +
Preference number: 3 (lower is better)
Translates to: YLRGRSLGAKCL*VYTSYSCLVWM
Trigger: CATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCTAGAGACCTGCCCCTTAAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
3UTR GCA 72 bp CAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTaGCTCTTATTTAAGGGGCAGGTCTCTAGGAGCCAA +
Preference number: 3 (lower is better)
Translates to: QTPSCMKLLFLF*LLFKGQVSRSQ
Trigger: TTGGCTCCTAGAGACCTGCCCCTTAAATAAGAGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
3UTR-3UTR CAA 90 bp AAGCTTCAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTGCCTCTTATTTTGCCTAGTGTGGATGTaGACAGCCTCAGGAGAACTC +
Preference number: 3 (lower is better)
Translates to: KLQTPSCMKLLFLFCLLFCLVWM*TASGEL
Trigger: GAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCA...AAATAAGAGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
3UTR CCA 72 bp AATCCTGAAAAATGCCCTAGTAGTTCTATTATGGTCTaGAATGCAGATACATGTGTCCTTTGGATCTCGGCT +
Preference number: 3 (lower is better)
Translates to: NPEKCPSSSIMV*NADTCVLWISA
Trigger: AGCCGAGATCCAAAGGACACATGTATCTGCATTCCAGACCATAATAGAACTACTAGGGCATTTTTCAGGATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000642080.1
3UTR GCA 72 bp GCCAAATTTGAAAGGATCCAGGAGTATCTCAGATTATaGCCTCAAAACACTGTCATGATGACTGTAGAATTG +
Preference number: 3 (lower is better)
Translates to: AKFERIQEYLRL*PQNTVMMTVEL
Trigger: CAATTCTACAGTCATCATGACAGTGTTTTGAGGGCATAATCTGAGATACTCCTGGATCCTTTCAAATTTGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
3UTR CCA 72 bp ATGCTTCACAAACTGAATCCTAGTTCTCCTAAGTCCTaGGTAGTTCCCATATTTAAAAGTAAAAACTGTCCG +
Preference number: 3 (lower is better)
Translates to: MLHKLNPSSPKS*VVPIFKSKNCP
Trigger: CGGACAGTTTTTACTTTTAAATATGGGAACTACCCAGGACTTAGGAGAACTAGGATTCAGTTTGTGAAGCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000642080.1
3UTR GCA 72 bp CAACTGAATCATTTTTCGTTACCTGATCAGTCCTTTTaGTTTCATACCTGTAGCTACATTGTTTCTTCTCTT +
Preference number: 3 (lower is better)
Translates to: QLNHFSLPDQSF*FHTCSYIVSSL
Trigger: AAGAGAAGAAACAATGTAGCTACAGGTATGAAAGCAAAAGGACTGATCAGGTAACGAAAAATGATTCAGTTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR GCA 90 bp GTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCCAAGGTGACCAAGAGTaGCTACGGCAGGACCTGAGG +
Preference number: 4 (lower is better)
Translates to: VYTSYSCLVWMLTASGELQGDQE*LRQDLR
Trigger: CCTCAGGTCCTGCCGTAGGCACTCTTGGTCACCTTG...GAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR GCA 90 bp GTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCCAATCAGCCCAATGCTaGAGGCCCCCAGGACAAGTT +
Preference number: 4 (lower is better)
Translates to: VYTSYSCLVWMLTASGELQSAQC*RPPGQV
Trigger: AACTTGTCCTGGGGGCCTGCAGCATTGGGCTGATTG...GAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CCA 90 bp CATCTATTTCTCCTGGGCTATCTAATCCTGAGGCCACTTTCCCTCCCCACACAGACCCTGCCAATGATATaGGCTGGCTCATACCTACGA +
Preference number: 4 (lower is better)
Translates to: HLFLLGYLILRPLSLPTQTLPMI*AGSYLR
Trigger: TCGTAGGTATGAGCCAGCCCATATCATTGGCAGGGT...CTGTGTGGGGAGGGAAAGTGGCCTCAGGATTAGATAGCCCAGGAGAAATAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CCA 90 bp TACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCGCCCCCAGGACAAGTTaGATACGCAGCCTCTTGTTC +
Preference number: 4 (lower is better)
Translates to: YTSYSCLVWMLTASGELFAPRTS*IRSLLF
Trigger: GAACAAGAGGCTGCGTATCCAACTTGTCCTGGGGGC...GAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR TCA 90 bp GTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCGTAGAAAGTGTGCCCTaGGACCATACTGCCACCAGG +
Preference number: 4 (lower is better)
Translates to: VFVSLHLIFLPSVDVDSLVESVP*DHTATR
Trigger: CCTGGTGGCAGTATGGTCTCAGGGCACACTTTCTAC...GAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR GCA 90 bp TCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTACATCAATCAGCCCAATGCTaGAGGCCCCCAGGACAAGTT +
Preference number: 4 (lower is better)
Translates to: SYSCLVWMLTASGELFLHQSAQC*RPPGQV
Trigger: AACTTGTCCTGGGGGCCTGCAGCATTGGGCTGATTG...ATGTAGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR GCA 90 bp GTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCCTACAATCAGCCCAATaGTGCAGGCCCCCAGGACAA +
Preference number: 4 (lower is better)
Translates to: VFVSLHLIFLPSVDVDSLLQSAQ*CRPPGQ
Trigger: TTGTCCTGGGGGCCTGCAGCATTGGGCTGATTGTAG...GAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CCA 90 bp CACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTGTCACCGAGATCAGCTaGTCATGTTCTCTGGTGTTC +
Preference number: 4 (lower is better)
Translates to: HLIFLPSVDVDSLRRTLPVTEIS*SCSLVF
Trigger: GAACACCAGAGAACATGACCAGCTGATCTCGGTGAC...AGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR TCA 90 bp AGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTACACGCCAAAAAGGGTaGTCTGCTGCTCATGGAAGC +
Preference number: 4 (lower is better)
Translates to: SLHLIFLPSVDVDSLRRTTRQKG*SAAHGS
Trigger: GCTTCCATGAGCAGCAGATCACCCTTTTTGGCGTGT...AGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR TCA 90 bp ACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTACCGAGGAGTAAAGATTaGAATGTCAGGCTCCCTTGG +
Preference number: 4 (lower is better)
Translates to: TSYSCLVWMLTASGELFLPRSKD*NVRLPW
Trigger: CCAAGGGAGCCTGACATTTCAATCTTTACTCCTCGG...TAGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR TCA 90 bp TTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTGAGGCCTTCAGAATATaGCCCCAACCTACCCTTCTG +
Preference number: 4 (lower is better)
Translates to: LHLIFLPSVDVDSLRRTLEAFRI*PQPTLL
Trigger: CAGAAGGGTAGGTTGGGGTCATATTCTGAAGGCCTC...AAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR TCA 90 bp TTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGGGTTGGTGGATCACCTaGGGTCAGGAGTTTGAGATC +
Preference number: 4 (lower is better)
Translates to: FVSLHLIFLPSVDVDSLRGWWIT*GQEFEI
Trigger: GATCTCAAACTCCTGACCTCAGGTGATCCACCAACC...CCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR TCA 90 bp AACTGCTATTCCTCTTTTGCCTCTTATTTAAGGGGCAGGTCTCTAGGAGCCAAGAACCCCAAATCTACATaGCAGTCCTGGGACAGCCTC +
Preference number: 4 (lower is better)
Translates to: NCYSSFASYLRGRSLGAKNPKST*QSWDSL
Trigger: GAGGCTGTCCCAGGACTGTCATGTAGATTTGGGGTT...CTTGGCTCCTAGAGACCTGCCCCTTAAATAAGAGGCAAAAGAGGAATAGCAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR GCA 90 bp AGAACATCTATTTCTCCTGGGCTATCTAATCCTGAGGCCACTTTCCCTCCCCACCCAAAAAGGGTGATCTaGTGCTCATGGAAGCTAGAG +
Preference number: 4 (lower is better)
Translates to: RTSISPGLSNPEATFPPHPKRVI*CSWKLE
Trigger: CTCTAGCTTCCATGAGCAGCAGATCACCCTTTTTGG...GTGGGGAGGGAAAGTGGCCTCAGGATTAGATAGCCCAGGAGAAATAGATGTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR GCA 90 bp AGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTCTACAATCAGCCCAATaGTGCAGGCCCCCAGGACAA +
Preference number: 4 (lower is better)
Translates to: RSQVFVSLHLIFLPSVDVLQSAQ*CRPPGQ
Trigger: TTGTCCTGGGGGCCTGCAGCATTGGGCTGATTGTAG...AACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CCA 90 bp TCTAGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGCCCCCAGGACAAGTTaGATACGCAGCCTCTTGTTC +
Preference number: 4 (lower is better)
Translates to: SRSQVFVSLHLIFLPSVDAPRTS*IRSLLF
Trigger: GAACAAGAGGCTGCGTATCCAACTTGTCCTGGGGGC...ATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CCA 90 bp CTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTACAGTCACCGAGATCAGCTaGTCATGTTCTCTGGTGTTC +
Preference number: 4 (lower is better)
Translates to: LIFLPSVDVDSLRRTLPTVTEIS*SCSLVF
Trigger: GAACACCAGAGAACATGACCAGCTGATCTCGGTGAC...TGTAGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR TCA 90 bp AGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTACACGCCAAAAAGGGTaGTCTGCTGCTCATGGAAGC +
Preference number: 4 (lower is better)
Translates to: RSQVFVSLHLIFLPSVDVTRQKG*SAAHGS
Trigger: GCTTCCATGAGCAGCAGATCACCCTTTTTGGCGTGT...AACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR TCA 90 bp CAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCACACGCCAAAAAGGGTaGTCTGCTGCTCATGGAAGC +
Preference number: 4 (lower is better)
Translates to: QVFVSLHLIFLPSVDVDSTRQKG*SAAHGS
Trigger: GCTTCCATGAGCAGCAGATCACCCTTTTTGGCGTGT...GCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR TCA 90 bp GTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGACACAGAAGGGTAACCTaGATACAGATGTCACTTGCG +
Preference number: 4 (lower is better)
Translates to: VSLHLIFLPSVDVDSLRRHRRVT*IQMSLA
Trigger: CGCAAGTGACATCTGTATTCAGGTTACCCTTCTGTG...TCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR TCA 90 bp AGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACCTGAGGTCAGGAGTTTaGGATCAGCCTGGGCAACAT +
Preference number: 4 (lower is better)
Translates to: SQVFVSLHLIFLPSVDVDLRSGV*DQPGQH
Trigger: ATGTTGCCCAGGCTGATCTCAAACTCCTGACCTCAG...GTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR GCA 90 bp GTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGACCAAAAAGGGTGATCTaGTGCTCATGGAAGCTAGAG +
Preference number: 4 (lower is better)
Translates to: VSLHLIFLPSVDVDSLRRPKRVI*CSWKLE
Trigger: CTCTAGCTTCCATGAGCAGCAGATCACCCTTTTTGG...TCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR GCA 90 bp TACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCCAAAAAGGGTGATCTaGTGCTCATGGAAGCTAGAG +
Preference number: 4 (lower is better)
Translates to: YTSYSCLVWMLTASGELFPKRVI*CSWKLE
Trigger: CTCTAGCTTCCATGAGCAGCAGATCACCCTTTTTGG...GAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CCA 90 bp ATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTACATGGTCATACCTACGAGGCTaGAGAGCATTCTTGGGAGAA +
Preference number: 4 (lower is better)
Translates to: IFLPSVDVDSLRRTLPTWSYLRG*RAFLGE
Trigger: TTCTCCCAAGAATGCTCTCCAGCCTCGTAGGTATGA...CCATGTAGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CCA 90 bp AGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACGCCAATGATATGGGCTaGCTCATACCTACGAGGCTG +
Preference number: 4 (lower is better)
Translates to: SQVFVSLHLIFLPSVDVDANDMG*LIPTRL
Trigger: CAGCCTCGTAGGTATGAGCCAGCCCATATCATTGGC...GTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR TCA 90 bp GTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTGTATATACAGTCTCTaGAGTGGACAGCATGCTCAG +
Preference number: 4 (lower is better)
Translates to: VYTSYSCLVWMLTASGELCIYSL*SGQHAQ
Trigger: CTGAGCATGCTGTCCACTTCAGAGACTGTATATACA...GAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR TCA 90 bp AGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCACAGAAGGGTAACCTaGATACAGATGTCACTTGCG +
Preference number: 4 (lower is better)
Translates to: SLHLIFLPSVDVDSLRRTHRRVT*IQMSLA
Trigger: CGCAAGTGACATCTGTATTCAGGTTACCCTTCTGTG...AGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR TCA 90 bp TACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCGGAGCCAAGTGTTTGTaGGTTTACACCTCATATTCC +
Preference number: 4 (lower is better)
Translates to: YTSYSCLVWMLTASGELFGAKCL*VYTSYS
Trigger: GGAATATGAGGTGTAAACTCACAAACACTTGGCTCC...GAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR TCA 90 bp CATCTATTTCTCCTGGGCTATCTAATCCTGAGGCCACTTTCCCTCCCCACACAGAGACTCCCAGTTGTATaGAACTGCTATTCCTCTTTT +
Preference number: 4 (lower is better)
Translates to: HLFLLGYLILRPLSLPTQRLPVV*NCYSSF
Trigger: AAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCT...CTGTGTGGGGAGGGAAAGTGGCCTCAGGATTAGATAGCCCAGGAGAAATAGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR GCA 90 bp CACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTTGTCACTTGCGTTATTaGTACAATCAGCCCAATGCT +
Preference number: 4 (lower is better)
Translates to: HLIFLPSVDVDSLRRTLPCHLRY*YNQPNA
Trigger: AGCATTGGGCTGATTGTAGCAATAACGCAAGTGACA...AGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CCA 90 bp GTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCTCATACCTACGAGGCTaGAGAGCATTCTTGGGAGAA +
Preference number: 4 (lower is better)
Translates to: VFVSLHLIFLPSVDVDSLSYLRG*RAFLGE
Trigger: TTCTCCCAAGAATGCTCTCCAGCCTCGTAGGTATGA...GAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CCA 90 bp TCTAGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATACCCTGCCAATGATATaGGCTGGCTCATACCTACGA +
Preference number: 4 (lower is better)
Translates to: SRSQVFVSLHLIFLPSVDTLPMI*AGSYLR
Trigger: TCGTAGGTATGAGCCAGCCCATATCATTGGCAGGGT...ATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCTAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CCA 90 bp CAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCGTCACCGAGATCAGCTaGTCATGTTCTCTGGTGTTC +
Preference number: 4 (lower is better)
Translates to: QVFVSLHLIFLPSVDVDSVTEIS*SCSLVF
Trigger: GAACACCAGAGAACATGACCAGCTGATCTCGGTGAC...GCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CCA 90 bp GTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCCAGTTTCAGAAGCCCTaGTGCTCTAGTATAGGAAGA +
Preference number: 4 (lower is better)
Translates to: VYTSYSCLVWMLTASGELQFQKP*CSSIGR
Trigger: TCTTCCTATACTAGAGCACCAGGGCTTCTGAAACTG...GAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR TCA 90 bp CTCTTTTGCCTCTTATTTAAGGGGCAGGTCTCTAGGAGCCAAGTGTTTGTGAGTGGAGCCAAGTGTTTGTaGGTTTACACCTCATATTCC +
Preference number: 4 (lower is better)
Translates to: LFCLLFKGQVSRSQVFVSGAKCL*VYTSYS
Trigger: GGAATATGAGGTGTAAACTCACAAACACTTGGCTCC...ACTCACAAACACTTGGCTCCTAGAGACCTGCCCCTTAAATAAGAGGCAAAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR TCA 90 bp TGCCTCTTATTTAAGGGGCAGGTCTCTAGGAGCCAAGTGTTTGTGAGTTTACACATTGGTTCCCAAATATaGCTCTGCTTAGCACTGAGG +
Preference number: 4 (lower is better)
Translates to: CLLFKGQVSRSQVFVSLHIGSQI*LCLALR
Trigger: CCTCAGTGCTAAGCAGAGTCATATTTGGGAACCAAT...GTGTAAACTCACAAACACTTGGCTCCTAGAGACCTGCCCCTTAAATAAGAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR GCA 90 bp TTTAAAGCTTCAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTGCCTCTTCTACAATCAGCCCAATaGTGCAGGCCCCCAGGACAA +
Preference number: 4 (lower is better)
Translates to: FKASDSQLYETAIPLLPLLQSAQ*CRPPGQ
Trigger: TTGTCCTGGGGGCCTGCAGCATTGGGCTGATTGTAG...AAGAGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGCTTTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR GCA 90 bp CTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTACATACACCTCATATTCCTaGCTAGTGTGGATGTTGACA +
Preference number: 4 (lower is better)
Translates to: LIFLPSVDVDSLRRTLPTYTSYS*LVWMLT
Trigger: TGTCAACATCCACACTAGGCAGGAATATGAGGTGTA...TGTAGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CCA 90 bp CCTCCACTCCATGTTCTCTATGACAGTCTGATTCAGCTTCATCTTAAGTACATAGCCAATGATATGGGCTaGCTCATACCTACGAGGCTG +
Preference number: 4 (lower is better)
Translates to: PPLHVLYDSLIQLHLKYIANDMG*LIPTRL
Trigger: CAGCCTCGTAGGTATGAGCCAGCCCATATCATTGGC...TATGTACTTAAGATGAAGCTGAATCAGACTGTCATAGAGAACATGGAGTGGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CCA 90 bp TATTTAAAGCTTCAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTGCCTCGCCCCCAGGACAAGTTaGATACGCAGCCTCTTGTTC +
Preference number: 4 (lower is better)
Translates to: YLKLQTPSCMKLLFLFCLAPRTS*IRSLLF
Trigger: GAACAAGAGGCTGCGTATCCAACTTGTCCTGGGGGC...GAGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGCTTTAAATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR CCA 90 bp AGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTAGAACTCTTCCTACATaGTCAGGAAAACTTCCCACC +
Preference number: 4 (lower is better)
Translates to: SLHLIFLPSVDVDSLRRTRTLPT*SGKLPT
Trigger: GGTGGGAAGTTTTCCTGACCATGTAGGAAGAGTTCT...AGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CCA 90 bp GTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGAACTCTTCCTACATaGTCAGGAAAACTTCCCACC +
Preference number: 4 (lower is better)
Translates to: VFVSLHLIFLPSVDVDSLRTLPT*SGKLPT
Trigger: GGTGGGAAGTTTTCCTGACCATGTAGGAAGAGTTCT...GAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CCA 90 bp CTCTTATTTAAGGGGCAGGTCTCTAGGAGCCAAGTGTTTGTGAGTTTACACCTCAGAACTCTTCCTACATaGTCAGGAAAACTTCCCACC +
Preference number: 4 (lower is better)
Translates to: LLFKGQVSRSQVFVSLHLRTLPT*SGKLPT
Trigger: GGTGGGAAGTTTTCCTGACCATGTAGGAAGAGTTCT...GAGGTGTAAACTCACAAACACTTGGCTCCTAGAGACCTGCCCCTTAAATAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR CCA 90 bp CATCTATTTCTCCTGGGCTATCTAATCCTGAGGCCACTTTCCCTCCCCACACAGATTGCCTTCATTAGGTaGAGATTCACAAAGAAACCA +
Preference number: 4 (lower is better)
Translates to: HLFLLGYLILRPLSLPTQIAFIR*RFTKKP
Trigger: TGGTTTCTTTGTGAATCTCCACCTAATGAAGGCAAT...CTGTGTGGGGAGGGAAAGTGGCCTCAGGATTAGATAGCCCAGGAGAAATAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR TCA 90 bp TTTAAGGGGCAGGTCTCTAGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCTGTATATACAGTCTCTaGAGTGGACAGCATGCTCAG +
Preference number: 4 (lower is better)
Translates to: FKGQVSRSQVFVSLHLIFCIYSL*SGQHAQ
Trigger: CTGAGCATGCTGTCCACTTCAGAGACTGTATATACA...GAATATGAGGTGTAAACTCACAAACACTTGGCTCCTAGAGACCTGCCCCTTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR TCA 90 bp CCCAGTTGTATGAAACTGCTATTCCTCTTTTGCCTCTTATTTAAGGGGCAGGTCGGAGCCAAGTGTTTGTaGGTTTACACCTCATATTCC +
Preference number: 4 (lower is better)
Translates to: PSCMKLLFLFCLLFKGQVGAKCL*VYTSYS
Trigger: GGAATATGAGGTGTAAACTCACAAACACTTGGCTCC...GACCTGCCCCTTAAATAAGAGGCAAAAGAGGAATAGCAGTTTCATACAACTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR TCA 90 bp ATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTACATGGAGACTCCCAGTTGTATaGAACTGCTATTCCTCTTTT +
Preference number: 4 (lower is better)
Translates to: IFLPSVDVDSLRRTLPTWRLPVV*NCYSSF
Trigger: AAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCT...CCATGTAGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR TCA 90 bp ATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTACATGGAGATGCTTCACAAACTaGATCCTAGTTCTCCTAAGT +
Preference number: 4 (lower is better)
Translates to: IFLPSVDVDSLRRTLPTWRCFTN*ILVLLS
Trigger: ACTTAGGAGAACTAGGATTCAGTTTGTGAAGCATCT...CCATGTAGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR TCA 90 bp CTCTTATTTAAGGGGCAGGTCTCTAGGAGCCAAGTGTTTGTGAGTTTACACCTCCACATTGAATTACGGTaGGTTCTGCATAAACCCATC +
Preference number: 4 (lower is better)
Translates to: LLFKGQVSRSQVFVSLHLHIELR*VLHKPI
Trigger: GATGGGTTTATGCAGAACTCACCGTAATTCAATGTG...GAGGTGTAAACTCACAAACACTTGGCTCCTAGAGACCTGCCCCTTAAATAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR GCA 90 bp AACTGCTATTCCTCTTTTGCCTCTTATTTAAGGGGCAGGTCTCTAGGAGCCAAGAAAAGGGTGATCTGCTaGTCATGGAAGCTAGAGAAA +
Preference number: 4 (lower is better)
Translates to: NCYSSFASYLRGRSLGAKKRVIC*SWKLEK
Trigger: TTTCTCTAGCTTCCATGAGCAGCAGATCACCCTTTT...CTTGGCTCCTAGAGACCTGCCCCTTAAATAAGAGGCAAAAGAGGAATAGCAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR GCA 90 bp TTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGTACACCTCATATTCCTaGCTAGTGTGGATGTTGACA +
Preference number: 4 (lower is better)
Translates to: FVSLHLIFLPSVDVDSLRYTSYS*LVWMLT
Trigger: TGTCAACATCCACACTAGGCAGGAATATGAGGTGTA...CCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR TCA 90 bp CTCTTTTGCCTCTTATTTAAGGGGCAGGTCTCTAGGAGCCAAGTGTTTGTGAGTGCATTCTTGGGAGAATaGCCAATGTATATACAGTCT +
Preference number: 4 (lower is better)
Translates to: LFCLLFKGQVSRSQVFVSAFLGE*PMYIQS
Trigger: AGACTGTATATACATTGGTCATTCTCCCAAGAATGC...ACTCACAAACACTTGGCTCCTAGAGACCTGCCCCTTAAATAAGAGGCAAAAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR GCA 90 bp TCTAGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATAAAAGGGTGATCTGCTaGTCATGGAAGCTAGAGAAA +
Preference number: 4 (lower is better)
Translates to: SRSQVFVSLHLIFLPSVDKRVIC*SWKLEK
Trigger: TTTCTCTAGCTTCCATGAGCAGCAGATCACCCTTTT...ATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR GCA 90 bp TACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCAATACAGATGTCACTTaGGTTATTGCTACAATCAGC +
Preference number: 4 (lower is better)
Translates to: YTSYSCLVWMLTASGELFNTDVT*VIATIS
Trigger: GCTGATTGTAGCAATAACGCAAGTGACATCTGTATT...GAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR GCA 90 bp ACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTAAATACAGATGTCACTTaGGTTATTGCTACAATCAGC +
Preference number: 4 (lower is better)
Translates to: TSYSCLVWMLTASGELFLNTDVT*VIATIS
Trigger: GCTGATTGTAGCAATAACGCAAGTGACATCTGTATT...TAGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR GCA 90 bp TTTAAGGGGCAGGTCTCTAGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCTATTCCTCTTTTaGCTCTTATTTAAGGGGCAG +
Preference number: 4 (lower is better)
Translates to: FKGQVSRSQVFVSLHLIFLLFLF*LLFKGQ
Trigger: CTGCCCCTTAAATAAGAGGCAAAAGAGGAATAGCAG...GAATATGAGGTGTAAACTCACAAACACTTGGCTCCTAGAGACCTGCCCCTTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR GCA 90 bp AGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTCTGCTATTCCTCTTTTaGCTCTTATTTAAGGGGCAG +
Preference number: 4 (lower is better)
Translates to: RSQVFVSLHLIFLPSVDVLLFLF*LLFKGQ
Trigger: CTGCCCCTTAAATAAGAGGCAAAAGAGGAATAGCAG...AACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR CCA 90 bp TTATTTAAAGCTTCAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTGCCTGCCAATGATATGGGCTaGCTCATACCTACGAGGCTG +
Preference number: 4 (lower is better)
Translates to: LFKASDSQLYETAIPLLPANDMG*LIPTRL
Trigger: CAGCCTCGTAGGTATGAGCCAGCCCATATCATTGGC...AGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGCTTTAAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR CCA 90 bp AAGCTTCAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTGCCTCTTATTTACCCTGCCAATGATATaGGCTGGCTCATACCTACGA +
Preference number: 4 (lower is better)
Translates to: KLQTPSCMKLLFLFCLLFTLPMI*AGSYLR
Trigger: TCGTAGGTATGAGCCAGCCCATATCATTGGCAGGGT...AAATAAGAGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR CCA 90 bp CCTGATCAGTCCTTTTGCTTTCATACCTGTAGCTACATTGTTTCTTCTCTTTGGAATGTCAGGCTCCCTTaGCCACAATGGATAGGCATA +
Preference number: 4 (lower is better)
Translates to: PDQSFCFHTCSYIVSSLWNVRLP*PQWIGI
Trigger: TATGCCTATCCATTGTGGCCAAGGGAGCCTGACATT...CCAAAGAGAAGAAACAATGTAGCTACAGGTATGAAAGCAAAAGGACTGATCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR TCA 90 bp CAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCGCATTCTTGGGAGAATaGCCAATGTATATACAGTCT +
Preference number: 4 (lower is better)
Translates to: QVFVSLHLIFLPSVDVDSAFLGE*PMYIQS
Trigger: AGACTGTATATACATTGGTCATTCTCCCAAGAATGC...GCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR TCA 90 bp TTTAAAGCTTCAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTGCCTCTTCACAGAAGGGTAACCTaGATACAGATGTCACTTGCG +
Preference number: 4 (lower is better)
Translates to: FKASDSQLYETAIPLLPLHRRVT*IQMSLA
Trigger: CGCAAGTGACATCTGTATTCAGGTTACCCTTCTGTG...AAGAGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGCTTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR TCA 90 bp TCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTACATTCATTTTTCGTTACCTaGTCAGTCCTTTTGCTTTCA +
Preference number: 4 (lower is better)
Translates to: SYSCLVWMLTASGELFLHSFFVT*SVLLLS
Trigger: TGAAAGCAAAAGGACTGATCAGGTAACGAAAAATGA...ATGTAGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR TCA 90 bp TATTTAAAGCTTCAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTGCCTCGCCCAGCCTAGTCACTaGTTTGACAGCAAATCCTTA +
Preference number: 4 (lower is better)
Translates to: YLKLQTPSCMKLLFLFCLAQPSH*FDSKSL
Trigger: TAAGGATTTGCTGTCAAATCAGTGACTAGGCTGGGC...GAGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGCTTTAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR GCA 90 bp CTCTTATTTAAGGGGCAGGTCTCTAGGAGCCAAGTGTTTGTGAGTTTACACCTCAATACAGATGTCACTTaGGTTATTGCTACAATCAGC +
Preference number: 4 (lower is better)
Translates to: LLFKGQVSRSQVFVSLHLNTDVT*VIATIS
Trigger: GCTGATTGTAGCAATAACGCAAGTGACATCTGTATT...GAGGTGTAAACTCACAAACACTTGGCTCCTAGAGACCTGCCCCTTAAATAAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR GCA 90 bp TTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGTATTATGGTCTGGAATaGAGATACATGTGTCCTTTG +
Preference number: 4 (lower is better)
Translates to: FVSLHLIFLPSVDVDSLRYYGLE*RYMCPL
Trigger: CAAAGGACACATGTATCTGCATTCCAGACCATAATA...CCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CCA 90 bp TGCCTCTTATTTAAGGGGCAGGTCTCTAGGAGCCAAGTGTTTGTGAGTTTACACAAGCTAGAGAAACCTTaGAAAACAAAGTCAGTGATG +
Preference number: 4 (lower is better)
Translates to: CLLFKGQVSRSQVFVSLHKLEKP*KTKSVM
Trigger: CATCACTGACTTTGTTTTCCAAGGTTTCTCTAGCTT...GTGTAAACTCACAAACACTTGGCTCCTAGAGACCTGCCCCTTAAATAAGAGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR CCA 90 bp AGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGATACATGTGTCCTTTaGATCTCGGCTGTTTTGTTT +
Preference number: 4 (lower is better)
Translates to: RSQVFVSLHLIFLPSVDVDTCVL*ISAVLF
Trigger: AAACAAAACAGCCGAGATCCAAAGGACACATGTATC...AACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR GCA 90 bp CCTCCACTCCATGTTCTCTATGACAGTCTGATTCAGCTTCATCTTAAGTACATACCTGATCAGTCCTTTTaGTTTCATACCTGTAGCTAC +
Preference number: 4 (lower is better)
Translates to: PPLHVLYDSLIQLHLKYIPDQSF*FHTCSY
Trigger: GTAGCTACAGGTATGAAAGCAAAAGGACTGATCAGG...TATGTACTTAAGATGAAGCTGAATCAGACTGTCATAGAGAACATGGAGTGGAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CCA 90 bp AGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAAGCTAGAGAAACCTTaGAAAACAAAGTCAGTGATG +
Preference number: 4 (lower is better)
Translates to: SQVFVSLHLIFLPSVDVDKLEKP*KTKSVM
Trigger: CATCACTGACTTTGTTTTCCAAGGTTTCTCTAGCTT...GTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CCA 90 bp TCTAGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATAGTTCTCCTAAGTCCTaGGTAGTTCCCATATTTAAA +
Preference number: 4 (lower is better)
Translates to: SRSQVFVSLHLIFLPSVDSSPKS*VVPIFK
Trigger: TTTAAATATGGGAACTACCCAGGACTTAGGAGAACT...ATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCTAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR GCA 90 bp AAGCTTCAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTGCCTCTTATTTTGTCACTTGCGTTATTaGTACAATCAGCCCAATGCT +
Preference number: 4 (lower is better)
Translates to: KLQTPSCMKLLFLFCLLFCHLRY*YNQPNA
Trigger: AGCATTGGGCTGATTGTAGCAATAACGCAAGTGACA...AAATAAGAGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR GCA 90 bp TTAAAGCTTCAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTGCCTCTTATACACCTCATATTCCTaGCTAGTGTGGATGTTGACA +
Preference number: 4 (lower is better)
Translates to: LKLQTPSCMKLLFLFCLLYTSYS*LVWMLT
Trigger: TGTCAACATCCACACTAGGCAGGAATATGAGGTGTA...TAAGAGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGCTTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR CCA 90 bp AGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTCTAGTAGTTCTATTATaGTCTGGAATGCAGATACAT +
Preference number: 4 (lower is better)
Translates to: RSQVFVSLHLIFLPSVDVLVVLL*SGMQIH
Trigger: ATGTATCTGCATTCCAGACCATAATAGAACTACTAG...AACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR GCA 90 bp TTATTTAAAGCTTCAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTGCCTTGTCACTTGCGTTATTaGTACAATCAGCCCAATGCT +
Preference number: 4 (lower is better)
Translates to: LFKASDSQLYETAIPLLPCHLRY*YNQPNA
Trigger: AGCATTGGGCTGATTGTAGCAATAACGCAAGTGACA...AGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGCTTTAAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR GCA 90 bp TTTAAAGCTTCAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTGCCTCTTGAGTATCTCAGATTATaGCCTCAAAACACTGTCATG +
Preference number: 4 (lower is better)
Translates to: FKASDSQLYETAIPLLPLEYLRL*PQNTVM
Trigger: CATGACAGTGTTTTGAGGGCATAATCTGAGATACTC...AAGAGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGCTTTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CCA 90 bp CCTCCACTCCATGTTCTCTATGACAGTCTGATTCAGCTTCATCTTAAGTACATAAAGCTAGAGAAACCTTaGAAAACAAAGTCAGTGATG +
Preference number: 4 (lower is better)
Translates to: PPLHVLYDSLIQLHLKYIKLEKP*KTKSVM
Trigger: CATCACTGACTTTGTTTTCCAAGGTTTCTCTAGCTT...TATGTACTTAAGATGAAGCTGAATCAGACTGTCATAGAGAACATGGAGTGGAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CCA 90 bp CCTGATCAGTCCTTTTGCTTTCATACCTGTAGCTACATTGTTTCTTCTCTTTGGTCTCTTTTCATGGATTaGTTCCCAAATATGACTCTG +
Preference number: 4 (lower is better)
Translates to: PDQSFCFHTCSYIVSSLWSLFMD*FPNMTL
Trigger: CAGAGTCATATTTGGGAACCAATCCATGAAAAGAGA...CCAAAGAGAAGAAACAATGTAGCTACAGGTATGAAAGCAAAAGGACTGATCAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CCA 90 bp CCTCCACTCCATGTTCTCTATGACAGTCTGATTCAGCTTCATCTTAAGTACATAAGTTCTATTATGGTCTaGAATGCAGATACATGTGTC +
Preference number: 4 (lower is better)
Translates to: PPLHVLYDSLIQLHLKYISSIMV*NADTCV
Trigger: GACACATGTATCTGCATTCCAGACCATAATAGAACT...TATGTACTTAAGATGAAGCTGAATCAGACTGTCATAGAGAACATGGAGTGGAGG
39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR GCA 90 bp AGCCCATACTACTTTCTGGCCTTTTATTTAGGCATATCTTATCCTTGTTTGTCTAATTACGGTGAGTTCTaGATAAACCCATCTCCCTTT +
Preference number: 4 (lower is better)
Translates to: SPYYFLAFYLGISYPCLSNYGEF*INPSPF
Trigger: AAAGGGAGATGGGTTTATGCAGAACTCACCGTAATT...AGACAAACAAGGATAAGATATGCCTAAATAAAAGGCCAGAAAGTAGTATGGGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR TCA 90 bp AAACTGAATCCTAGTTCTCCTAAGTCCTGGGTAGTTCCCATATTTAAAAGTAAATTCTCTATGACAGTCTaGTTCAGCTTCATCTTAAGT +
Preference number: 4 (lower is better)
Translates to: KLNPSSPKSWVVPIFKSKFSMTV*FSFILS
Trigger: ACTTAAGATGAAGCTGAATCAGACTGTCATAGAGAA...TTTACTTTTAAATATGGGAACTACCCAGGACTTAGGAGAACTAGGATTCAGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS CCA 90 bp TTCCCAAATATGACTCTGCTTAGCACTGAGGCACAACGGGAAAGCTaGGCTGGAGGAGGCCGAGGAGTAAAGATTGAAATGTCAGGCTCC +
Preference number: 5 (lower is better)
Translates to: FPNMTLLSTEAQRES*AGGGRGVKIEMSGS
Trigger: GGAGCCTGACATTTCAATCTTTACTCCTCGGCCTCCTCCAGCCCAGCTTTCCCGTTGTGCCTCAGTGCTAAGCAGAGTCATATTTGGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CAA 90 bp TACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCGGCCCCCAGGACAAGTaGGATACGCAGCCTCTTGTT +
Preference number: 5 (lower is better)
Translates to: YTSYSCLVWMLTASGELFGPQDK*DTQPLV
Trigger: AACAAGAGGCTGCGTATCCAACTTGTCCTGGGGGCC...GAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CAA 90 bp GTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCGGCCCCCAGGACAAGTaGGATACGCAGCCTCTTGTT +
Preference number: 5 (lower is better)
Translates to: VYTSYSCLVWMLTASGELGPQDK*DTQPLV
Trigger: AACAAGAGGCTGCGTATCCAACTTGTCCTGGGGGCC...GAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS CCA 90 bp CTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTACATaGTCAGGAAAACTTCCCACCAACAGCCCTGCACAGAGCATCTTT +
Preference number: 5 (lower is better)
Translates to: LPSVDVDSLRRTLPT*SGKLPTNSPAQSIF
Trigger: AAAGATGCTCTGTGCAGGGCTGTTGGTGGGAAGTTTTCCTGACCATGTAGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CAA 90 bp AGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTGGCCCCCAGGACAAGTaGGATACGCAGCCTCTTGTT +
Preference number: 5 (lower is better)
Translates to: SLHLIFLPSVDVDSLRRTGPQDK*DTQPLV
Trigger: AACAAGAGGCTGCGTATCCAACTTGTCCTGGGGGCC...AGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CAA 90 bp TACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCTGCCTAGTGTGGATGTaGACAGCCTCAGGAGAACTC +
Preference number: 5 (lower is better)
Translates to: YTSYSCLVWMLTASGELFCLVWM*TASGEL
Trigger: GAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCA...GAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CAA 90 bp CTCTTATTTAAGGGGCAGGTCTCTAGGAGCCAAGTGTTTGTGAGTTTACACCTCCCTGAGGTCAGGAGTTaGAGATCAGCCTGGGCAACA +
Preference number: 5 (lower is better)
Translates to: LLFKGQVSRSQVFVSLHLPEVRS*RSAWAT
Trigger: TGTTGCCCAGGCTGATCTCAAACTCCTGACCTCAGG...GAGGTGTAAACTCACAAACACTTGGCTCCTAGAGACCTGCCCCTTAAATAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CAA 90 bp TCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTACATTGCCTAGTGTGGATGTaGACAGCCTCAGGAGAACTC +
Preference number: 5 (lower is better)
Translates to: SYSCLVWMLTASGELFLHCLVWM*TASGEL
Trigger: GAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCA...ATGTAGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CAA 90 bp TCTAGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATTGCCTAGTGTGGATGTaGACAGCCTCAGGAGAACTC +
Preference number: 5 (lower is better)
Translates to: SRSQVFVSLHLIFLPSVDCLVWM*TASGEL
Trigger: GAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCA...ATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCTAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CAA 90 bp CACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTTCAAGGGGCTTTCTATaGCCTTCATTAGGTGGAGAT +
Preference number: 5 (lower is better)
Translates to: HLIFLPSVDVDSLRRTLPSRGFL*PSLGGD
Trigger: ATCTCCACCTAATGAAGGCAATAGAAAGCCCCTTGA...AGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CAA 90 bp TCTAGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATCATGAGCTTTTTGGCTaGCAGTCCAAAGTCTCCCTC +
Preference number: 5 (lower is better)
Translates to: SRSQVFVSLHLIFLPSVDHELFG*QSKVSL
Trigger: GAGGGAGACTTTGGACTGCAAGCCAAAAAGCTCATG...ATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCTAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CAA 90 bp TGCTATTCCTCTTTTGCCTCTTATTTAAGGGGCAGGTCTCTAGGAGCCAAGTGTATGTCACTTGCGTTATaGCTACAATCAGCCCAATGC +
Preference number: 5 (lower is better)
Translates to: CYSSFASYLRGRSLGAKCMSLAL*LQSAQC
Trigger: GCATTGGGCTGATTGTAGCAATAACGCAAGTGACAT...ACACTTGGCTCCTAGAGACCTGCCCCTTAAATAAGAGGCAAAAGAGGAATAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR CAA 90 bp TCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTACATGCTTCAGACTCCCAGTaGTATGAAACTGCTATTCCT +
Preference number: 5 (lower is better)
Translates to: SYSCLVWMLTASGELFLHASDSQ*YETAIP
Trigger: AGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGC...ATGTAGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR CAA 90 bp CTGCTATTCCTCTTTTGCCTCTTATTTAAGGGGCAGGTCTCTAGGAGCCAAGTGAGATACATGTGTCCTTaGGATCTCGGCTGTTTTGTT +
Preference number: 5 (lower is better)
Translates to: LLFLFCLLFKGQVSRSQVRYMCP*DLGCFV
Trigger: AACAAAACAGCCGAGATCCAAAGGACACATGTATCT...CACTTGGCTCCTAGAGACCTGCCCCTTAAATAAGAGGCAAAAGAGGAATAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CAA 90 bp ACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTACTCTCTTTTCATGGATaGGTTCCCAAATCTGAAACA +
Preference number: 5 (lower is better)
Translates to: TSYSCLVWMLTASGELFLLSFHG*VPKSET
Trigger: TGTTTCAGATTTGGGAACCAATCCATGAAAAGAGAG...TAGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000641630.1
CDS-3UTR CAA 90 bp ATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTACATGGGTCACAATGATGATATaGCCTGCTAAGGTTAAGATG +
Preference number: 5 (lower is better)
Translates to: IFLPSVDVDSLRRTLPTWVTMMI*PAKVKM
Trigger: CATCTTAACCTTAGCAGGCAATATCATCATTGTGAC...CCATGTAGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CAA 90 bp TCTAGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATATGTCACTTGCGTTATaGCTACAATCAGCCCAATGC +
Preference number: 5 (lower is better)
Translates to: SRSQVFVSLHLIFLPSVDMSLAL*LQSAQC
Trigger: GCATTGGGCTGATTGTAGCAATAACGCAAGTGACAT...ATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCTAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CAA 90 bp TACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCGAATACAGATGTCACTaGCGTTATTGCTACAATCAG +
Preference number: 5 (lower is better)
Translates to: YTSYSCLVWMLTASGELFEYRCH*RYCYNQ
Trigger: CTGATTGTAGCAATAACGCAAGTGACATCTGTATTC...GAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CAA 90 bp GTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCATCCTTATTCTTCCCTaGGTGCTCATCTGTATCTCA +
Preference number: 5 (lower is better)
Translates to: VFVSLHLIFLPSVDVDSLILILP*VLICIS
Trigger: TGAGATACAGATGAGCACCAAGGGAAGAATAAGGAT...GAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CAA 90 bp TTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTTCTCGGCTGTTTTGTTaGTTTGTTCGTTCAAAGGCT +
Preference number: 5 (lower is better)
Translates to: LHLIFLPSVDVDSLRRTLSRLFC*FVRSKA
Trigger: AGCCTTTGAACGAACAAACAAACAAAACAGCCGAGA...AAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CAA 90 bp TCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTCTTCCTACATCTCTCTTTTCATGGATaGGTTCCCAAATCTGAAACA +
Preference number: 5 (lower is better)
Translates to: SYSCLVWMLTASGELFLHLSFHG*VPKSET
Trigger: TGTTTCAGATTTGGGAACCAATCCATGAAAAGAGAG...ATGTAGGAAGAGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000641630.1
CDS-3UTR CAA 90 bp TTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGGAATACAGATGTCACTaGCGTTATTGCTACAATCAG +
Preference number: 5 (lower is better)
Translates to: FVSLHLIFLPSVDVDSLREYRCH*RYCYNQ
Trigger: CTGATTGTAGCAATAACGCAAGTGACATCTGTATTC...CCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CAA 90 bp GTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCGAATACAGATGTCACTaGCGTTATTGCTACAATCAG +
Preference number: 5 (lower is better)
Translates to: VFVSLHLIFLPSVDVDSLEYRCH*RYCYNQ
Trigger: CTGATTGTAGCAATAACGCAAGTGACATCTGTATTC...GAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CAA 90 bp CAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCGTCACAATGATGATATaGCCTGCTAAGGTTAAGATG +
Preference number: 5 (lower is better)
Translates to: QVFVSLHLIFLPSVDVDSVTMMI*PAKVKM
Trigger: CATCTTAACCTTAGCAGGCAATATCATCATTGTGAC...GCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CAA 90 bp TCTAGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTCACAATGATGATATaGCCTGCTAAGGTTAAGATG +
Preference number: 5 (lower is better)
Translates to: SRSQVFVSLHLIFLPSVDVTMMI*PAKVKM
Trigger: CATCTTAACCTTAGCAGGCAATATCATCATTGTGAC...ATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCTAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000423932.6
ENST00000641630.1
ENST00000642080.1
CDS-3UTR CAA 90 bp GTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGCATATCTTATCCTaGTTTGTCTATTTATCCCCA +
Preference number: 5 (lower is better)
Translates to: VFVSLHLIFLPSVDVDSLRHILS*FVYLSP
Trigger: TGGGGATAAATAGACAAACAAGGATAAGATATGCCT...GAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR CAA 90 bp AGTTTACACCTCATATTCCTGCCTAGTGTGGATGTTGACAGCCTCAGGAGAACTAGGCATATCTTATCCTaGTTTGTCTATTTATCCCCA +
Preference number: 5 (lower is better)
Translates to: SLHLIFLPSVDVDSLRRTRHILS*FVYLSP
Trigger: TGGGGATAAATAGACAAACAAGGATAAGATATGCCT...AGTTCTCCTGAGGCTGTCAACATCCACACTAGGCAGGAATATGAGGTGTAAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR CAA 90 bp TCTAGGAGCCAAGTGTTTGTGAGTTTACACCTCATATTCCTGCCTAGTGTGGATCATACTGTCAAATGCTaGTTTTTACCACTAGGCTTG +
Preference number: 5 (lower is better)
Translates to: SRSQVFVSLHLIFLPSVDHTVKC*FLPLGL
Trigger: CAAGCCTAGTGGTAAAAACAAGCATTTGACAGTATG...ATCCACACTAGGCAGGAATATGAGGTGTAAACTCACAAACACTTGGCTCCTAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CAA 90 bp TTAAAGCTTCAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTGCCTCTTAGCTTCAGACTCCCAGTaGTATGAAACTGCTATTCCT +
Preference number: 5 (lower is better)
Translates to: LKLQTPSCMKLLFLFCLLASDSQ*YETAIP
Trigger: AGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGC...TAAGAGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGCTTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000423932.6
ENST00000642080.1
CDS-3UTR CAA 90 bp AAACTGAATCCTAGTTCTCCTAAGTCCTGGGTAGTTCCCATATTTAAAAGTAAAATGTCACTTGCGTTATaGCTACAATCAGCCCAATGC +
Preference number: 5 (lower is better)
Translates to: KLNPSSPKSWVVPIFKSKMSLAL*LQSAQC
Trigger: GCATTGGGCTGATTGTAGCAATAACGCAAGTGACAT...TTTACTTTTAAATATGGGAACTACCCAGGACTTAGGAGAACTAGGATTCAGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CAA 90 bp TATTTAAAGCTTCAGACTCCCAGTTGTATGAAACTGCTATTCCTCTTTTGCCTCCTCTCTTTTCATGGATaGGTTCCCAAATATGACTCT +
Preference number: 5 (lower is better)
Translates to: YLKLQTPSCMKLLFLFCLLSFHG*VPKYDS
Trigger: AGAGTCATATTTGGGAACCAATCCATGAAAAGAGAG...GAGGCAAAAGAGGAATAGCAGTTTCATACAACTGGGAGTCTGAAGCTTTAAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CAA 90 bp AGCCCATACTACTTTCTGGCCTTTTATTTAGGCATATCTTATCCTTGTTTGTCTCTGAAATTCCTTAATTaGGCATATGAGGCCTTCAGA +
Preference number: 5 (lower is better)
Translates to: SPYYFLAFYLGISYPCLSLKFLN*AYEAFR
Trigger: TCTGAAGGCCTCATATGCCAAATTAAGGAATTTCAG...AGACAAACAAGGATAAGATATGCCTAAATAAAAGGCCAGAAAGTAGTATGGGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS-3UTR CAA 90 bp AAACTGAATCCTAGTTCTCCTAAGTCCTGGGTAGTTCCCATATTTAAAAGTAAATTACTCATGAGCTTTTaGGCTTGCAGTCCAAAGTCT +
Preference number: 5 (lower is better)
Translates to: KLNPSSPKSWVVPIFKSKLLMSF*ACSPKS
Trigger: AGACTTTGGACTGCAAGCCAAAAAGCTCATGAGTAA...TTTACTTTTAAATATGGGAACTACCCAGGACTTAGGAGAACTAGGATTCAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000642080.1
CDS TCA 72 bp GGAAAGCTGGGCTGGAGGAGGCCGAGGAGTAAAGATTaGAATGTCAGGCTCCCTTGGCCACAATGGATAGGC +
Preference number: 6 (lower is better)
Translates to: GKLGWRRPRSKD*NVRLPWPQWIG
Trigger: GCCTATCCATTGTGGCCAAGGGAGCCTGACATTTCAATCTTTACTCCTCGGCCTCCTCCAGCCCAGCTTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000642080.1