RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NYX (Homo sapiens)

Ensembl gene IDs: ENSG00000188937

Ensembl transcript IDs: ENST00000342595.2, ENST00000378220.2, ENST00000486842.1

Found 217 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCCATACCATCCTCCCCCTCGAGTGGCACGTCCCTGTGTTCTCCCTaGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGG +
Preference number: 1 (lower is better)
Translates to: SIPSSPSSGTSLCSP*GHLWRQTVPSTLHW
Trigger: CCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGAGAACACAGGGACGTGCCACTCGAGGGGGAGGATGGTATGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
3UTR GCA 90 bp TGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTaGCCTCCATTCCGGCTCCTCTCCCCTTACCACAAACACACTCAA +
Preference number: 1 (lower is better)
Translates to: WRQTVPSTLHWDFHL*PPFRLLSPYHKHTQ
Trigger: TTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCGGAATGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
3UTR-3UTR CCA 90 bp TCCAATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCGACCCTGGGGCCATCTCTaGAGGCAAACGGTTCCTTCC +
Preference number: 2 (lower is better)
Translates to: SNGCPCDKSRNPYHPPPRPWGHL*RQTVPS
Trigger: GGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGG...TCGAGGGGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCATTGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
3UTR-3UTR CCA 90 bp TTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCTCTTAACTACTTACCCTGGGGCCATCTCTaGAGGCAAACGGTTCCTTCC +
Preference number: 2 (lower is better)
Translates to: FGVMGYPARRNGTALNYLPWGHL*RQTVPS
Trigger: GGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGG...TAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
3UTR-3UTR CCA 90 bp ACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCCTTGCAGGCATCCTCCCCCTCGAGTaGCACGTCCCTGTGTTCTCC +
Preference number: 2 (lower is better)
Translates to: TALNYLANGSLSNSGLAGILPLE*HVPVFS
Trigger: GGAGAACACAGGGACGTGCCACTCGAGGGGGAGGAT...GCCTGCAAGGCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
3UTR-3UTR GCA 90 bp CTCTTTTCCAATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCTGGGATTTTCACCTCTaGCCTCCATTCCGGCTCCTC +
Preference number: 2 (lower is better)
Translates to: LFSNGCPCDKSRNPYHPPWDFHL*PPFRLL
Trigger: GAGGAGCCGGAATGGAGGGCAGAGGTGAAAATCCCA...GGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCATTGGAAAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
3UTR CAA 90 bp AGCTTCCGATTCCTAGTCTTCCCACCCGAGGGCCCACGTTCATTCTaGCTTCTCTTTTCCAATGGATGCCCGTGTGACAAAAGCAGAAAT +
Preference number: 2 (lower is better)
Translates to: SFRFLVFPPEGPRSF*LLFSNGCPCDKSRN
Trigger: ATTTCTGCTTTTGTCACACGGGCATCCATTGGAAAAGAGAAGCAAGAATGAACGTGGGCCCTCGGGTGGGAAGACTAGGAATCGGAAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
3UTR-3UTR GCA 90 bp AACTGTGGAGTAAATGAACTGGATCTTTGTTTTAAACGCCTCCTAACACATCTCTGGGATTTTCACCTCTaGCCTCCATTCCGGCTCCTC +
Preference number: 2 (lower is better)
Translates to: NCGVNELDLCFKRLLTHLWDFHL*PPFRLL
Trigger: GAGGAGCCGGAATGGAGGGCAGAGGTGAAAATCCCA...GAGATGTGTTAGGAGGCGTTTAAAACAAAGATCCAGTTCATTTACTCCACAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
3UTR-3UTR TCA 90 bp AGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCCAATGGATGCCCGTGTaGCAAAAGCAGAAATCCATA +
Preference number: 2 (lower is better)
Translates to: RNGTALNYLANGSLSNSGQWMPV*QKQKSI
Trigger: TATGGATTTCTGCTTTTGTCACACGGGCATCCATTG...GCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
3UTR-3UTR GCA 90 bp AGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCGCCCACGTTCATTCTTaGTTCTCTTTTCCAATGGAT +
Preference number: 2 (lower is better)
Translates to: RNGTALNYLANGSLSNSGAHVHS*FSFPMD
Trigger: ATCCATTGGAAAAGAGAAGCAAGAATGAACGTGGGC...GCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
3UTR GCA 72 bp ACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTaGCCTCCATTCCGGCTCCTCTCCCCTTACCACAAA +
Preference number: 3 (lower is better)
Translates to: TVPSTLHWDFHL*PPFRLLSPYHK
Trigger: TTTGTGGTAAGGGGAGAGGAGCCGGAATGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
3UTR-3UTR CAA 90 bp AACTGTGGAGTAAATGAACTGGATCTTTGTTTTAAACGCCTCCTAACACATCTCTCTCTAATTCAGGCCTaGCAGGCACTGTTGCCTGGA +
Preference number: 3 (lower is better)
Translates to: NCGVNELDLCFKRLLTHLSLIQA*QALLPG
Trigger: TCCAGGCAACAGTGCCTGCAAGGCCTGAATTAGAGA...GAGATGTGTTAGGAGGCGTTTAAAACAAAGATCCAGTTCATTTACTCCACAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp GTTCTCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGCGGCCGCGCTCCAGGTaGGCGTGCGTCAGGTTGGCC +
Preference number: 4 (lower is better)
Translates to: VLPGAISGGKRFLPPSTGRPRSR*ACVRLA
Trigger: GGCCAACCTGACGCACGCGCACCTGGAGCGCGGCCG...CCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGAGAAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp AATCCATACCATCCTCCCCCTCGAGTGGCACGTCCCTGTGTTCTCCCTGGGGCCAGGCCACCGCCTCGATaGGGCCGCGCTCCAGGTGCG +
Preference number: 4 (lower is better)
Translates to: NPYHPPPRVARPCVLPGARPPPR*GRAPGA
Trigger: CGCACCTGGAGCGCGGCCGCATCGAGGCGGTGGCCT...GGCCCCAGGGAGAACACAGGGACGTGCCACTCGAGGGGGAGGATGGTATGGATT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp AATCCATACCATCCTCCCCCTCGAGTGGCACGTCCCTGTGTTCTCCCTGGGGCCCGCAGGTCGCCGTTGTaGGCCAGGCGCAGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: NPYHPPPRVARPCVLPGARRSPL*ARRSSA
Trigger: GGCTGAGCTGCGCCTGGCGCACAACGGCGACCTGCG...GGCCCCAGGGAGAACACAGGGACGTGCCACTCGAGGGGGAGGATGGTATGGATT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp GTTCTCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGCACGGTGGTGGCCGCTaGTTCTGGGGACGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: VLPGAISGGKRFLPPSTGHGGGR*FWGRAW
Trigger: CCAGGCCCGTCCCCAGAACCAGCGGCCACCACCGTG...CCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGAGAAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp TCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTCGGCCGCGCTCCAGGTaGGCGTGCGTCAGGTTGGCC +
Preference number: 4 (lower is better)
Translates to: SLGPSLEANGSFHPPLGFRPRSR*ACVRLA
Trigger: GGCCAACCTGACGCACGCGCACCTGGAGCGCGGCCG...AAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp TGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCAGGTTGGCCTGCAGGCTaGGCGAGCGCAGGCGGCGCA +
Preference number: 4 (lower is better)
Translates to: WRQTVPSTLHWDFHLCPPGWPAG*ASAGGA
Trigger: TGCGCCGCCTGCGCTCGCTCAGCCTGCAGGCCAACC...TGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp TCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTCCGAAGGCGCCAGCGTaGACGGCACGGACGCGGTTG +
Preference number: 4 (lower is better)
Translates to: SLGPSLEANGSFHPPLGFPKAPA*TARTRL
Trigger: CAACCGCGTCCGTGCCGTGCACGCTGGCGCCTTCGG...AAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp TTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCATTCCGGCTCCTCTCGCACGGCACGTCGGTaGCACGTCCGGAGCCCTCCA +
Preference number: 4 (lower is better)
Translates to: FLPPSTGIFTSALHSGSSRTARR*HVRSPP
Trigger: TGGAGGGCTCCGGACGTGTCACCGACGTGCCGTGCG...AGAGGAGCCGGAATGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp TGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCACGCACGGCACGTCGGTaGCACGTCCGGAGCCCTCCA +
Preference number: 4 (lower is better)
Translates to: WRQTVPSTLHWDFHLCPPRTARR*HVRSPP
Trigger: TGGAGGGCTCCGGACGTGTCACCGACGTGCCGTGCG...TGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp TGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCAGGCCCTGCAGCGAGCTaGAGGCCACCGCCTCGATGC +
Preference number: 4 (lower is better)
Translates to: WRQTVPSTLHWDFHLCPPGPAAS*RPPPRC
Trigger: GCATCGAGGCGGTGGCCTCCAGCTCGCTGCAGGGCC...TGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp TCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTGGTGGCCGCTGGTTCTaGGGACGGGCCTGGACTGGA +
Preference number: 4 (lower is better)
Translates to: SLGPSLEANGSFHPPLGFGGRWF*GRAWTG
Trigger: TCCAGTCCAGGCCCGTCCCCAGAACCAGCGGCCACC...AAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp AATCCATACCATCCTCCCCCTCGAGTGGCACGTCCCTGTGTTCTCCCTGGGGCCCCAAACACCACGTGCTaGGCCACGCTGGGCAGGAGA +
Preference number: 4 (lower is better)
Translates to: NPYHPPPRVARPCVLPGAPNTTC*ATLGRR
Trigger: TCTCCTGCCCAGCGTGGCCCAGCACGTGGTGTTTGG...GGCCCCAGGGAGAACACAGGGACGTGCCACTCGAGGGGGAGGATGGTATGGATT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp TTCTCTCACGTCCTGCCTACCTTCCTGAATCCTAGTGTTTCCAGGCCCCTGGAGCGAAGGTCACCTGGCTaGGGTCCAGGCCGGCCACGG +
Preference number: 4 (lower is better)
Translates to: FSHVLPTFLNPSVSRPLERRSPG*GPGRPR
Trigger: CCGTGGCCGGCCTGGACCTCAGCCAGGTGACCTTCG...CTCCAGGGGCCTGGAAACACTAGGATTCAGGAAGGTAGGCAGGACGTGAGAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp TTCTCTCACGTCCTGCCTACCTTCCTGAATCCTAGTGTTTCCAGGCCCCTGGAGAGGAGAAACCAGGGCTaGCGGCCCGCGCCTCCCACC +
Preference number: 4 (lower is better)
Translates to: FSHVLPTFLNPSVSRPLERRNQG*RPAPPT
Trigger: GGTGGGAGGCGCGGGCCGGCAGCCCTGGTTTCTCCT...CTCCAGGGGCCTGGAAACACTAGGATTCAGGAAGGTAGGCAGGACGTGAGAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp TCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTAGGACCACCCAGCCGTaGGACCCCTACCTGAGGGGA +
Preference number: 4 (lower is better)
Translates to: SLGPSLEANGSFHPPLGFRTTQP*DPYLRG
Trigger: TCCCCTCAGGTAGGGGTCCCACGGCTGGGTGGTCCT...AAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR CCA 90 bp GTTCTCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGTTCTGGGGACGGGCCTaGACTGGACGTGGTGAGGTT +
Preference number: 4 (lower is better)
Translates to: VLPGAISGGKRFLPPSTGFWGRA*TGRGEV
Trigger: AACCTCACCACGTCCAGTCCAGGCCCGTCCCCAGAA...CCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGAGAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp GAAAACAAAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCCGTTGCCACCCAGGTTaGGCGTGCGCAGGCGCCGCA +
Preference number: 4 (lower is better)
Translates to: ENKGLRCNGLPRQEKWDGRCHPG*ACAGAA
Trigger: TGCGGCGCCTGCGCACGCTCAACCTGGGTGGCAACG...GCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTTTGTTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp TCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTCTGGACTGGACGTGGTaGGGTTCAGCTCCTCGGGGT +
Preference number: 4 (lower is better)
Translates to: SLGPSLEANGSFHPPLGFLDWTW*GSAPRG
Trigger: ACCCCGAGGAGCTGAACCTCACCACGTCCAGTCCAG...AAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp GAAAACAAAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCCGCTCCAGGTGCGCGTaGGTCAGGTTGGCCAGGCCG +
Preference number: 4 (lower is better)
Translates to: ENKGLRCNGLPRQEKWDGRSRCA*VRLARP
Trigger: CGGCCTGGCCAACCTGACGCACGCGCACCTGGAGCG...GCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTTTGTTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp GTTCTCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGTCGTTGAGCAGCAGATaGTCCAGGACGCCACAGTCC +
Preference number: 4 (lower is better)
Translates to: VLPGAISGGKRFLPPSTGSLSSR*SRTPQS
Trigger: GGACTGTGGCGTCCTGGAGCATCTGCTGCTCAACGA...CCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGAGAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp AATCCATACCATCCTCCCCCTCGAGTGGCACGTCCCTGTGTTCTCCCTGGGGCCCCAGGTCAGTCCATCTaGAGGCCAAACACCACGTGC +
Preference number: 4 (lower is better)
Translates to: NPYHPPPRVARPCVLPGAPGQSI*RPNTTC
Trigger: GCACGTGGTGTTTGGCCTGCAGATGGACTGACCTGG...GGCCCCAGGGAGAACACAGGGACGTGCCACTCGAGGGGGAGGATGGTATGGATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp GGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTCCGGTCCAGGTCGATaGAGACCGCCTCGCACGGGA +
Preference number: 4 (lower is better)
Translates to: GHLWRQTVPSTLHWDFHLSGPGR*RPPRTG
Trigger: TCCCGTGCGAGGCGGTCTCCATCGACCTGGACCGGA...GAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp GAAAACAAAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCGGCCCTGCAGCGAGCTaGAGGCCACCGCCTCGATGC +
Preference number: 4 (lower is better)
Translates to: ENKGLRCNGLPRQEKWDGGPAAS*RPPPRC
Trigger: GCATCGAGGCGGTGGCCTCCAGCTCGCTGCAGGGCC...GCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTTTGTTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp TGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCAGGACCCCTACCGTCCTaGGAGTCTCCCTGGTCCTGC +
Preference number: 4 (lower is better)
Translates to: WRQTVPSTLHWDFHLCPPGPLPS*ESPWSC
Trigger: GCAGGACCAGGGAGACTCCCAGGACGGTAGGGGTCC...TGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378220.2
CDS-3UTR TCA 90 bp AATCCATACCATCCTCCCCCTCGAGTGGCACGTCCCTGTGTTCTCCCTGGGGCCGTCAGGCTACAGCCCTaGCAGCAACTCAGATGGCAT +
Preference number: 4 (lower is better)
Translates to: NPYHPPPRVARPCVLPGAVRLQP*QQLRWH
Trigger: ATGCCATCTGAGTTGCTGTCAGGGCTGTAGCCTGAC...GGCCCCAGGGAGAACACAGGGACGTGCCACTCGAGGGGGAGGATGGTATGGATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR TCA 90 bp CCATTCCGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAACGTTGCCACCCAGGTTaGGCGTGCGCAGGCGCCGCA +
Preference number: 4 (lower is better)
Translates to: PFRLLSPYHKHTQAQLSKRCHPG*ACAGAA
Trigger: TGCGGCGCCTGCGCACGCTCAACCTGGGTGGCAACG...TTTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCGGAATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp TGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCACTGGACTGGACGTGGTaGGGTTCAGCTCCTCGGGGT +
Preference number: 4 (lower is better)
Translates to: WRQTVPSTLHWDFHLCPPLDWTW*GSAPRG
Trigger: ACCCCGAGGAGCTGAACCTCACCACGTCCAGTCCAG...TGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp TGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCATGGAGAGGAGGCTGCTaGACCTGCTCACGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: WRQTVPSTLHWDFHLCPPWRGGC*TCSRWW
Trigger: CCACCACCGTGAGCAGGTTCAGCAGCCTCCTCTCCA...TGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp TTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCTCTTAACTACTTAAGGCCACCGCCTCGATaGGGCCGCGCTCCAGGTGCG +
Preference number: 4 (lower is better)
Translates to: FGVMGYPARRNGTALNYLRPPPR*GRAPGA
Trigger: CGCACCTGGAGCGCGGCCGCATCGAGGCGGTGGCCT...TAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp CCATTCCGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAACCGAAGGCGCCAGCGTaGACGGCACGGACGCGGTTG +
Preference number: 4 (lower is better)
Translates to: PFRLLSPYHKHTQAQLSKPKAPA*TARTRL
Trigger: CAACCGCGTCCGTGCCGTGCACGCTGGCGCCTTCGG...TTTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCGGAATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp TTCTCTCACGTCCTGCCTACCTTCCTGAATCCTAGTGTTTCCAGGCCCCTGGAGCGCAGCACCACGGGTTaGGGAAGAGGAAGAGGCGGC +
Preference number: 4 (lower is better)
Translates to: FSHVLPTFLNPSVSRPLERSTTG*GRGRGG
Trigger: GCCGCCTCTTCCTCTTCCGCAACCCGTGGTGCTGCG...CTCCAGGGGCCTGGAAACACTAGGATTCAGGAAGGTAGGCAGGACGTGAGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp CGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAACTTTCCAGGAGAAACCAGGGCTaGCGGCCCGCGCCTCCCACC +
Preference number: 4 (lower is better)
Translates to: RLLSPYHKHTQAQLSKLSRRNQG*RPAPPT
Trigger: GGTGGGAGGCGCGGGCCGGCAGCCCTGGTTTCTCCT...GGAAAGTTTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp TTCTCTCACGTCCTGCCTACCTTCCTGAATCCTAGTGTTTCCAGGCCCCTGGAGAGGCCAAACACCACGTaGTGGGCCACGCTGGGCAGG +
Preference number: 4 (lower is better)
Translates to: FSHVLPTFLNPSVSRPLERPNTT*WATLGR
Trigger: CCTGCCCAGCGTGGCCCAGCACGTGGTGTTTGGCCT...CTCCAGGGGCCTGGAAACACTAGGATTCAGGAAGGTAGGCAGGACGTGAGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp GTTCTCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGTGGGATTTTCACCTCTaGCCTCCATTCCGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: VLPGAISGGKRFLPPSTGWDFHL*PPFRLL
Trigger: GAGGAGCCGGAATGGAGGGCAGAGGTGAAAATCCCA...CCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGAGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp ATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCGAGTGGGGTGGCCGCTGGTTCTaGGGACGGGCCTGGACTGGA +
Preference number: 4 (lower is better)
Translates to: MDARVTKAEIHTILPLEWGGRWF*GRAWTG
Trigger: TCCAGTCCAGGCCCGTCCCCAGAACCAGCGGCCACC...CCACTCGAGGGGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp TTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCATTCCGGCTCCTCTCCAAACACCACGTGCTaGGCCACGCTGGGCAGGAGA +
Preference number: 4 (lower is better)
Translates to: FLPPSTGIFTSALHSGSSPNTTC*ATLGRR
Trigger: TCTCCTGCCCAGCGTGGCCCAGCACGTGGTGTTTGG...AGAGGAGCCGGAATGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp TTCTCTCACGTCCTGCCTACCTTCCTGAATCCTAGTGTTTCCAGGCCCCTGGAGTGGAGAGGAGGCTGCTaGACCTGCTCACGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: FSHVLPTFLNPSVSRPLEWRGGC*TCSRWW
Trigger: CCACCACCGTGAGCAGGTTCAGCAGCCTCCTCTCCA...CTCCAGGGGCCTGGAAACACTAGGATTCAGGAAGGTAGGCAGGACGTGAGAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp CCATTCCGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAAGCAAGGACGGCAGCGTaGCGAAGGCTCGCTCGCCCA +
Preference number: 4 (lower is better)
Translates to: PFRLLSPYHKHTQAQLSKARTAA*RRLARP
Trigger: TGGGCGAGCGAGCCTTCGGCACGCTGCCGTCCTTGC...TTTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCGGAATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp TTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCTCTTAACTACTTACGCAGGTCGCCGTTGTaGGCCAGGCGCAGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: FGVMGYPARRNGTALNYLRRSPL*ARRSSA
Trigger: GGCTGAGCTGCGCCTGGCGCACAACGGCGACCTGCG...TAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp GTGGTAGAAAACAAAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGCGGACGCGGTTGGCCTaGAGGCTGAGCGAGCGCAGG +
Preference number: 4 (lower is better)
Translates to: VVENKGLRCNGLPRQEKWRTRLA*RLSERR
Trigger: CCTGCGCTCGCTCAGCCTGCAGGCCAACCGCGTCCG...CCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTTTGTTTTCTACCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp TCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTCGAAGGCGATGCTGTTaGGGTCCAGGTAGAGCAGCT +
Preference number: 4 (lower is better)
Translates to: SLGPSLEANGSFHPPLGFRRRCC*GPGRAA
Trigger: AGCTGCTCTACCTGGACCGCAACAGCATCGCCTTCG...AAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp TCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTCCTCCACGAAGGCGATaGTGTTGCGGTCCAGGTAGA +
Preference number: 4 (lower is better)
Translates to: SLGPSLEANGSFHPPLGFPPRRR*CCGPGR
Trigger: TCTACCTGGACCGCAACAGCATCGCCTTCGTGGAGG...AAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp ATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCGAGTGGCGGTTGCCGTTGAGGTaGAGCGCGAGGAGACCCGAG +
Preference number: 4 (lower is better)
Translates to: MDARVTKAEIHTILPLEWRLPLR*SARRPE
Trigger: CTCGGGTCTCCTCGCGCTGCACCTCAACGGCAACCG...CCACTCGAGGGGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp ATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCGAGTGGAGGCCAAACACCACGTaGTGGGCCACGCTGGGCAGG +
Preference number: 4 (lower is better)
Translates to: MDARVTKAEIHTILPLEWRPNTT*WATLGR
Trigger: CCTGCCCAGCGTGGCCCAGCACGTGGTGTTTGGCCT...CCACTCGAGGGGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp TCCAATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCGAAGGACCACCCAGCCGTaGGACCCCTACCGTCCTGGG +
Preference number: 4 (lower is better)
Translates to: SNGCPCDKSRNPYHPPPRRTTQP*DPYRPG
Trigger: CCCAGGACGGTAGGGGTCCCACGGCTGGGTGGTCCT...TCGAGGGGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCATTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000378220.2
CDS-3UTR TCA 90 bp GTGGTAGAAAACAAAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGCCCAGGAGGGCCCCATaGGAACCCTCCCATGCCTCC +
Preference number: 4 (lower is better)
Translates to: VVENKGLRCNGLPRQEKWPRRAP*EPSHAS
Trigger: GGAGGCATGGGAGGGTTCTCATGGGGCCCTCCTGGG...CCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTTTGTTTTCTACCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR TCA 90 bp ACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCCTTGCAGGCGGCGCTCGGGCACGCTaGAGAGGCGGCAGGCTGCTA +
Preference number: 4 (lower is better)
Translates to: TALNYLANGSLSNSGLAGGARAR*RGGRLL
Trigger: TAGCAGCCTGCCGCCTCTTCAGCGTGCCCGAGCGCC...GCCTGCAAGGCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp TGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCACCAGCAGGTTGTCGTTaGGCAGCAGATGCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: WRQTVPSTLHWDFHLCPPPAGCR*AADAPG
Trigger: TCCTGGAGCATCTGCTGCTCAACGACAACCTGCTGG...TGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp CTCTTTTCCAATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCGCTCCAGGTGCGCGTaGGTCAGGTTGGCCAGGCCG +
Preference number: 4 (lower is better)
Translates to: LFSNGCPCDKSRNPYHPPRSRCA*VRLARP
Trigger: CGGCCTGGCCAACCTGACGCACGCGCACCTGGAGCG...GGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCATTGGAAAAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp CTCTTTTCCAATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCGGACGCGGTTGGCCTaGAGGCTGAGCGAGCGCAGG +
Preference number: 4 (lower is better)
Translates to: LFSNGCPCDKSRNPYHPPRTRLA*RLSERR
Trigger: CCTGCGCTCGCTCAGCCTGCAGGCCAACCGCGTCCG...GGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCATTGGAAAAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp TGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCATCGTTGAGCAGCAGATaGTCCAGGACGCCACAGTCC +
Preference number: 4 (lower is better)
Translates to: WRQTVPSTLHWDFHLCPPSLSSR*SRTPQS
Trigger: GGACTGTGGCGTCCTGGAGCATCTGCTGCTCAACGA...TGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp TCCAATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCGACGCAGCACCACGGGTTaGGGAAGAGGAAGAGGCGGC +
Preference number: 4 (lower is better)
Translates to: SNGCPCDKSRNPYHPPPRRSTTG*GRGRGG
Trigger: GCCGCCTCTTCCTCTTCCGCAACCCGTGGTGCTGCG...TCGAGGGGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCATTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp TGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCACTTTCATCCACCCAGTaGCTTAGGACCACCCAGCCG +
Preference number: 4 (lower is better)
Translates to: WRQTVPSTLHWDFHLCPPLSSTQ*LRTTQP
Trigger: CGGCTGGGTGGTCCTAAGCCACTGGGTGGATGAAAG...TGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp ATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCGAGTGGAAGGACAGGTTGTTGTaGCGCAGCGACAGGCGGCGC +
Preference number: 4 (lower is better)
Translates to: MDARVTKAEIHTILPLEWKDRLL*RSDRRR
Trigger: GCGCCGCCTGTCGCTGCGCCACAACAACCTGTCCTT...CCACTCGAGGGGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp TCCAATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCGAAGGAAGAAGCCGGGCTaGAAGGCGACCCAGGCGAGC +
Preference number: 4 (lower is better)
Translates to: SNGCPCDKSRNPYHPPPRRKKPG*KATQAS
Trigger: GCTCGCCTGGGTCGCCTTCCAGCCCGGCTTCTTCCT...TCGAGGGGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCATTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp CGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAACTTTCCACCTGCTCACGGTGGTaGCCGCTGGTTCTGGGGACG +
Preference number: 4 (lower is better)
Translates to: RLLSPYHKHTQAQLSKLSTCSRW*PLVLGT
Trigger: CGTCCCCAGAACCAGCGGCCACCACCGTGAGCAGGT...GGAAAGTTTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp TCCATTCCGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAACCTGCTCACGGTGGTaGCCGCTGGTTCTGGGGACG +
Preference number: 4 (lower is better)
Translates to: SIPAPLPLPQTHSSPVKQTCSRW*PLVLGT
Trigger: CGTCCCCAGAACCAGCGGCCACCACCGTGAGCAGGT...TTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCGGAATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp CGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAACTTTCCCGTGCTGGGCCACGCTaGGCAGGAGACAAGAGGCGA +
Preference number: 4 (lower is better)
Translates to: RLLSPYHKHTQAQLSKLSRAGPR*AGDKRR
Trigger: TCGCCTCTTGTCTCCTGCCCAGCGTGGCCCAGCACG...GGAAAGTTTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp AGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCGGTTGGCCTGCAGGCTaGGCGAGCGCAGGCGGCGCA +
Preference number: 4 (lower is better)
Translates to: RNGTALNYLANGSLSNSGGWPAG*ASAGGA
Trigger: TGCGCCGCCTGCGCTCGCTCAGCCTGCAGGCCAACC...GCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp CCATTCCGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAAGAGTCTCCCTGGTCCTaGTCCTCTGAGGTCCCCCTC +
Preference number: 4 (lower is better)
Translates to: PFRLLSPYHKHTQAQLSKESPWS*SSEVPL
Trigger: GAGGGGGACCTCAGAGGAGCAGGACCAGGGAGACTC...TTTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCGGAATGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp GTTCTCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATGGTCCTCAAATGTTaGTTACCGTCCTGGGAGTCT +
Preference number: 4 (lower is better)
Translates to: VLPGAISGGKRFLPPSTGMVLKC*LPSWES
Trigger: AGACTCCCAGGACGGTAAGCAACATTTGAGGACCAT...CCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR GCA 90 bp TTCTCTCACGTCCTGCCTACCTTCCTGAATCCTAGTGTTTCCAGGCCCCTGGAGCCGAGGACCACCGCATaGAGAAGCAGGACCAACATC +
Preference number: 4 (lower is better)
Translates to: FSHVLPTFLNPSVSRPLEPRTTA*RSRTNI
Trigger: GATGTTGGTCCTGCTTCTGCATGCGGTGGTCCTCGG...CTCCAGGGGCCTGGAAACACTAGGATTCAGGAAGGTAGGCAGGACGTGAGAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp TTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCTCTTAACTACTTATCCGGTCCAGGTCGATaGAGACCGCCTCGCACGGGA +
Preference number: 4 (lower is better)
Translates to: FGVMGYPARRNGTALNYLSGPGR*RPPRTG
Trigger: TCCCGTGCGAGGCGGTCTCCATCGACCTGGACCGGA...TAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp CGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAACTTTCCAGACCCGAGAGGTTCTaGAAGGCGCCCTCCTCCACG +
Preference number: 4 (lower is better)
Translates to: RLLSPYHKHTQAQLSKLSRPERF*KAPSST
Trigger: CGTGGAGGAGGGCGCCTTCCAGAACCTCTCGGGTCT...GGAAAGTTTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp GTGGTAGAAAACAAAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGAGGAAGAAGCCGGGCTaGAAGGCGACCCAGGCGAGC +
Preference number: 4 (lower is better)
Translates to: VVENKGLRCNGLPRQEKWRKKPG*KATQAS
Trigger: GCTCGCCTGGGTCGCCTTCCAGCCCGGCTTCTTCCT...CCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTTTGTTTTCTACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp GCCAGGAGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATCGCCCGAAGGTCACCTaGCTGAGGTCCAGGCCGGCC +
Preference number: 4 (lower is better)
Translates to: ARRNGTALNYLANGSLSNRPKVT*LRSRPA
Trigger: GGCCGGCCTGGACCTCAGCCAGGTGACCTTCGGGCG...ATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp GTGGTAGAAAACAAAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGCGTGCTGGGCCACGCTaGGCAGGAGACAAGAGGCGA +
Preference number: 4 (lower is better)
Translates to: VVENKGLRCNGLPRQEKWRAGPR*AGDKRR
Trigger: TCGCCTCTTGTCTCCTGCCCAGCGTGGCCCAGCACG...CCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTTTGTTTTCTACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp TTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCATTCCGGCTCCTCTCCTAAAGTTCCTTTGTaGCTAGGGCCAGCCCTGGGA +
Preference number: 4 (lower is better)
Translates to: FLPPSTGIFTSALHSGSSPKVPL*LGPALG
Trigger: TCCCAGGGCTGGCCCTAGCCACAAAGGAACTTTAGG...AGAGGAGCCGGAATGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp AGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCGGCGCTCGGGCACGCTaGAGAGGCGGCAGGCTGCTA +
Preference number: 4 (lower is better)
Translates to: RNGTALNYLANGSLSNSGGARAR*RGGRLL
Trigger: TAGCAGCCTGCCGCCTCTTCAGCGTGCCCGAGCGCC...GCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp AATCCATACCATCCTCCCCCTCGAGTGGCACGTCCCTGTGTTCTCCCTGGGGCCCAATGGATGCCCGTGTaGCAAAAGCAGAAATCCATA +
Preference number: 4 (lower is better)
Translates to: NPYHPPPRVARPCVLPGAQWMPV*QKQKSI
Trigger: TATGGATTTCTGCTTTTGTCACACGGGCATCCATTG...GGCCCCAGGGAGAACACAGGGACGTGCCACTCGAGGGGGAGGATGGTATGGATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp GGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTCCTGCCTACCTTCCTaGATCCTAGTGTTTCCAGGC +
Preference number: 4 (lower is better)
Translates to: GHLWRQTVPSTLHWDFHLSCLPS*ILVFPG
Trigger: GCCTGGAAACACTAGGATTCAGGAAGGTAGGCAGGA...GAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp ACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCCTTGCAGGCGGACAGGTCACCCAGTaGCCAGGAGGGCCCCATGAG +
Preference number: 4 (lower is better)
Translates to: TALNYLANGSLSNSGLAGGQVTQ*PGGPHE
Trigger: CTCATGGGGCCCTCCTGGGCACTGGGTGACCTGTCC...GCCTGCAAGGCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR GCA 90 bp AAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCTCTTAACCGAAGGCGATGCTGTTaGGGTCCAGGTAGAGCAGCT +
Preference number: 4 (lower is better)
Translates to: KDFGVMGYPARRNGTALNRRRCC*GPGRAA
Trigger: AGCTGCTCTACCTGGACCGCAACAGCATCGCCTTCG...GTTAAGAGCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp AGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCCGCCCGAAGGTCACCTaGCTGAGGTCCAGGCCGGCC +
Preference number: 4 (lower is better)
Translates to: RNGTALNYLANGSLSNSGRPKVT*LRSRPA
Trigger: GGCCGGCCTGGACCTCAGCCAGGTGACCTTCGGGCG...GCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp TGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCACTCAGATGGCATCACTaGCAACCCAGCAAGGAAATG +
Preference number: 4 (lower is better)
Translates to: WRQTVPSTLHWDFHLCPPLRWHH*QPSKEM
Trigger: CATTTCCTTGCTGGGTTGTCAGTGATGCCATCTGAG...TGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR TCA 90 bp TGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCACTCCACACTTCTTCCTaGATGCCCTGCCTTTCTTTC +
Preference number: 4 (lower is better)
Translates to: WRQTVPSTLHWDFHLCPPLHTSS*MPCLSF
Trigger: GAAAGAAAGGCAGGGCATTCAGGAAGAAGTGTGGAG...TGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR TCA 90 bp ACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCCTTGCAGGCCGTGGGACCCCTACCTaGGGGGAGAAAGGACAGGTC +
Preference number: 4 (lower is better)
Translates to: TALNYLANGSLSNSGLAGRGTPT*GEKGQV
Trigger: GACCTGTCCTTTCTCCCCTCAGGTAGGGGTCCCACG...GCCTGCAAGGCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR GCA 90 bp CCATTCCGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAACCGAGGACCACCGCATaGAGAAGCAGGACCAACATC +
Preference number: 4 (lower is better)
Translates to: PFRLLSPYHKHTQAQLSKPRTTA*RSRTNI
Trigger: GATGTTGGTCCTGCTTCTGCATGCGGTGGTCCTCGG...TTTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCGGAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp AGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCGCAAGGACGGCAGCGTaGCGAAGGCTCGCTCGCCCA +
Preference number: 4 (lower is better)
Translates to: RNGTALNYLANGSLSNSGARTAA*RRLARP
Trigger: TGGGCGAGCGAGCCTTCGGCACGCTGCCGTCCTTGC...GCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp CTCTTTTCCAATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCAAGGACAGGTTGTTGTaGCGCAGCGACAGGCGGCGC +
Preference number: 4 (lower is better)
Translates to: LFSNGCPCDKSRNPYHPPKDRLL*RSDRRR
Trigger: GCGCCGCCTGTCGCTGCGCCACAACAACCTGTCCTT...GGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCATTGGAAAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp CTCTTTTCCAATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCAGACCCGAGAGGTTCTaGAAGGCGCCCTCCTCCACG +
Preference number: 4 (lower is better)
Translates to: LFSNGCPCDKSRNPYHPPRPERF*KAPSST
Trigger: CGTGGAGGAGGGCGCCTTCCAGAACCTCTCGGGTCT...GGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCATTGGAAAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp CCATTCCGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAAGCAGGCACTGTTGCCTaGAAGATGAGGGGAAGGGGA +
Preference number: 4 (lower is better)
Translates to: PFRLLSPYHKHTQAQLSKAGTVA*KMRGRG
Trigger: TCCCCTTCCCCTCATCTTCCAGGCAACAGTGCCTGC...TTTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCGGAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp TTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCTCTTAACTACTTACCAGCAGGTTGTCGTTaGGCAGCAGATGCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: FGVMGYPARRNGTALNYLPAGCR*AADAPG
Trigger: TCCTGGAGCATCTGCTGCTCAACGACAACCTGCTGG...TAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp CGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAACTTTCCTGGGATTTTCACCTCTaGCCTCCATTCCGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: RLLSPYHKHTQAQLSKLSWDFHL*PPFRLL
Trigger: GAGGAGCCGGAATGGAGGGCAGAGGTGAAAATCCCA...GGAAAGTTTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp TCCATTCCGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAACCTTGCAGGCACTGTTaGCTGGAAGATGAGGGGAAG +
Preference number: 4 (lower is better)
Translates to: SIPAPLPLPQTHSSPVKQPCRHC*LEDEGK
Trigger: CTTCCCCTCATCTTCCAGGCAACAGTGCCTGCAAGG...TTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCGGAATGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp TTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCTCTTAACTACTTATGTTGCTTACCGTCCTaGGAGTCTCCCTGGTCCTGC +
Preference number: 4 (lower is better)
Translates to: FGVMGYPARRNGTALNYLCCLPS*ESPWSC
Trigger: GCAGGACCAGGGAGACTCCCAGGACGGTAAGCAACA...TAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR CCA 90 bp TTCTCTCACGTCCTGCCTACCTTCCTGAATCCTAGTGTTTCCAGGCCCCTGGAGCAGCAAGGAAATGGATaGAGAGGAAACCCCTGCAGA +
Preference number: 4 (lower is better)
Translates to: FSHVLPTFLNPSVSRPLEQQGNG*RGNPCR
Trigger: TCTGCAGGGGTTTCCTCTCCATCCATTTCCTTGCTG...CTCCAGGGGCCTGGAAACACTAGGATTCAGGAAGGTAGGCAGGACGTGAGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR TCA 90 bp AACTGTGGAGTAAATGAACTGGATCTTTGTTTTAAACGCCTCCTAACACATCTCCGAAGGTCACCTGGCTaGGGTCCAGGCCGGCCACGG +
Preference number: 4 (lower is better)
Translates to: NCGVNELDLCFKRLLTHLRRSPG*GPGRPR
Trigger: CCGTGGCCGGCCTGGACCTCAGCCAGGTGACCTTCG...GAGATGTGTTAGGAGGCGTTTAAAACAAAGATCCAGTTCATTTACTCCACAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp CTCTTTTCCAATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCCACGAAGGCGATaGTGTTGCGGTCCAGGTAGA +
Preference number: 4 (lower is better)
Translates to: LFSNGCPCDKSRNPYHPPPPRRR*CCGPGR
Trigger: TCTACCTGGACCGCAACAGCATCGCCTTCGTGGAGG...GGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCATTGGAAAAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp ACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCCTTGCAGGCCCAGGTCAGTCCATCTaGAGGCCAAACACCACGTGC +
Preference number: 4 (lower is better)
Translates to: TALNYLANGSLSNSGLAGPGQSI*RPNTTC
Trigger: GCACGTGGTGTTTGGCCTGCAGATGGACTGACCTGG...GCCTGCAAGGCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp GCCAGGAGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTTCTGGGGACGGGCCTaGACTGGACGTGGTGAGGTT +
Preference number: 4 (lower is better)
Translates to: ARRNGTALNYLANGSLSNFWGRA*TGRGEV
Trigger: AACCTCACCACGTCCAGTCCAGGCCCGTCCCCAGAA...ATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp GGGAATAACTGTGGAGTAAATGAACTGGATCTTTGTTTTAAACGCCTCCTAACACACGGTGGTGGCCGCTaGTTCTGGGGACGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: GNNCGVNELDLCFKRLLTHGGGR*FWGRAW
Trigger: CCAGGCCCGTCCCCAGAACCAGCGGCCACCACCGTG...TGTTAGGAGGCGTTTAAAACAAAGATCCAGTTCATTTACTCCACAGTTATTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp GCCAGGAGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATCCCTGGGGCCATCTCTaGAGGCAAACGGTTCCTTCC +
Preference number: 4 (lower is better)
Translates to: ARRNGTALNYLANGSLSNPWGHL*RQTVPS
Trigger: GGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGG...ATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp CTCTTTTCCAATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTTGCAGGCACTGTTaGCTGGAAGATGAGGGGAAG +
Preference number: 4 (lower is better)
Translates to: LFSNGCPCDKSRNPYHPPPCRHC*LEDEGK
Trigger: CTTCCCCTCATCTTCCAGGCAACAGTGCCTGCAAGG...GGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCATTGGAAAAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp TCCAATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCGAAACCCAGCAAGGAAATaGATGGAGAGGAAACCCCTG +
Preference number: 4 (lower is better)
Translates to: SNGCPCDKSRNPYHPPPRNPARK*MERKPL
Trigger: CAGGGGTTTCCTCTCCATCCATTTCCTTGCTGGGTT...TCGAGGGGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCATTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR CCA 90 bp AGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCATCCTCCCCCTCGAGTaGCACGTCCCTGTGTTCTCC +
Preference number: 4 (lower is better)
Translates to: RNGTALNYLANGSLSNSGILPLE*HVPVFS
Trigger: GGAGAACACAGGGACGTGCCACTCGAGGGGGAGGAT...GCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
3UTR CAA 72 bp TTCCTAGTCTTCCCACCCGAGGGCCCACGTTCATTCTaGCTTCTCTTTTCCAATGGATGCCCGTGTGACAAA +
Preference number: 4 (lower is better)
Translates to: FLVFPPEGPRSF*LLFSNGCPCDK
Trigger: TTTGTCACACGGGCATCCATTGGAAAAGAGAAGCAAGAATGAACGTGGGCCCTCGGGTGGGAAGACTAGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp GGGAATAACTGTGGAGTAAATGAACTGGATCTTTGTTTTAAACGCCTCCTAACACGGTTGCCGTTGAGGTaGAGCGCGAGGAGACCCGAG +
Preference number: 4 (lower is better)
Translates to: GNNCGVNELDLCFKRLLTRLPLR*SARRPE
Trigger: CTCGGGTCTCCTCGCGCTGCACCTCAACGGCAACCG...TGTTAGGAGGCGTTTAAAACAAAGATCCAGTTCATTTACTCCACAGTTATTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp ATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCGAGTGGCTCTTTTCCAATGGATaGCCGTGTGACAAAAGCAGA +
Preference number: 4 (lower is better)
Translates to: MDARVTKAEIHTILPLEWLFSNG*PCDKSR
Trigger: TCTGCTTTTGTCACACGGGCATCCATTGGAAAAGAG...CCACTCGAGGGGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp TTCTCTCACGTCCTGCCTACCTTCCTGAATCCTAGTGTTTCCAGGCCCCTGGAGGCCCACGTTCATTCTTaGTTCTCTTTTCCAATGGAT +
Preference number: 4 (lower is better)
Translates to: FSHVLPTFLNPSVSRPLEAHVHS*FSFPMD
Trigger: ATCCATTGGAAAAGAGAAGCAAGAATGAACGTGGGC...CTCCAGGGGCCTGGAAACACTAGGATTCAGGAAGGTAGGCAGGACGTGAGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp AGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCCTTTCATCCACCCAGTaGCTTAGGACCACCCAGCCG +
Preference number: 4 (lower is better)
Translates to: RNGTALNYLANGSLSNSGLSSTQ*LRTTQP
Trigger: CGGCTGGGTGGTCCTAAGCCACTGGGTGGATGAAAG...GCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp GCCAGGAGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCCTGCCTACCTTCCTaGATCCTAGTGTTTCCAGGC +
Preference number: 4 (lower is better)
Translates to: ARRNGTALNYLANGSLSNSCLPS*ILVFPG
Trigger: GCCTGGAAACACTAGGATTCAGGAAGGTAGGCAGGA...ATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp GGGAATAACTGTGGAGTAAATGAACTGGATCTTTGTTTTAAACGCCTCCTAACAGAGTCTCCCTGGTCCTaGTCCTCTGAGGTCCCCCTC +
Preference number: 4 (lower is better)
Translates to: GNNCGVNELDLCFKRLLTESPWS*SSEVPL
Trigger: GAGGGGGACCTCAGAGGAGCAGGACCAGGGAGACTC...TGTTAGGAGGCGTTTAAAACAAAGATCCAGTTCATTTACTCCACAGTTATTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp AGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCCCTAAAGTTCCTTTGTaGCTAGGGCCAGCCCTGGGA +
Preference number: 4 (lower is better)
Translates to: RNGTALNYLANGSLSNSGPKVPL*LGPALG
Trigger: TCCCAGGGCTGGCCCTAGCCACAAAGGAACTTTAGG...GCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp ACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCCTTGCAGGCGGCAGCCACAGATGCTaGAAATGGTTTGAGAGAGAA +
Preference number: 4 (lower is better)
Translates to: TALNYLANGSLSNSGLAGGSHRC*KWFERE
Trigger: TTCTCTCTCAAACCATTTTCAGCATCTGTGGCTGCC...GCCTGCAAGGCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000378220.2
CDS-3UTR GCA 90 bp CTCTTTTCCAATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCTGGAGAGGAAACCCCTaGAGAGAAGCGTTAGTGAAT +
Preference number: 4 (lower is better)
Translates to: LFSNGCPCDKSRNPYHPPWRGNP*REALVN
Trigger: ATTCACTAACGCTTCTCTGCAGGGGTTTCCTCTCCA...GGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCATTGGAAAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR GCA 90 bp TCCATTCCGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAGCCCACGTTCATTCTTaGTTCTCTTTTCCAATGGAT +
Preference number: 4 (lower is better)
Translates to: SIPAPLPLPQTHSSPVKQAHVHS*FSFPMD
Trigger: ATCCATTGGAAAAGAGAAGCAAGAATGAACGTGGGC...TTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCGGAATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp CTCTTTTCCAATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCAATGGATGCCCGTGTaGCAAAAGCAGAAATCCATA +
Preference number: 4 (lower is better)
Translates to: LFSNGCPCDKSRNPYHPPQWMPV*QKQKSI
Trigger: TATGGATTTCTGCTTTTGTCACACGGGCATCCATTG...GGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCATTGGAAAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CCA 90 bp GGGAATAACTGTGGAGTAAATGAACTGGATCTTTGTTTTAAACGCCTCCTAACAGCAGGCACTGTTGCCTaGAAGATGAGGGGAAGGGGA +
Preference number: 4 (lower is better)
Translates to: GNNCGVNELDLCFKRLLTAGTVA*KMRGRG
Trigger: TCCCCTTCCCCTCATCTTCCAGGCAACAGTGCCTGC...TGTTAGGAGGCGTTTAAAACAAAGATCCAGTTCATTTACTCCACAGTTATTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR GCA 90 bp GCCAGGAGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATCTCTTTTCCAATGGATaGCCGTGTGACAAAAGCAGA +
Preference number: 4 (lower is better)
Translates to: ARRNGTALNYLANGSLSNLFSNG*PCDKSR
Trigger: TCTGCTTTTGTCACACGGGCATCCATTGGAAAAGAG...ATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR TCA 90 bp GGGAATAACTGTGGAGTAAATGAACTGGATCTTTGTTTTAAACGCCTCCTAACAGACGGGAGGAAGGGGTaGAGAGGAATAGTTACTTGT +
Preference number: 4 (lower is better)
Translates to: GNNCGVNELDLCFKRLLTDGRKG*RGIVTC
Trigger: ACAAGTAACTATTCCTCTTCACCCCTTCCTCCCGTC...TGTTAGGAGGCGTTTAAAACAAAGATCCAGTTCATTTACTCCACAGTTATTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378220.2
CDS-3UTR CCA 90 bp GCCAGGAGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATAGAAGCGTTAGTGAATaGTCCTCAAATGTTGCTTAC +
Preference number: 4 (lower is better)
Translates to: ARRNGTALNYLANGSLSNRSVSE*SSNVAY
Trigger: GTAAGCAACATTTGAGGACCATTCACTAACGCTTCT...ATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR TCA 90 bp AACTGTGGAGTAAATGAACTGGATCTTTGTTTTAAACGCCTCCTAACACATCTCATGCTGAAAATGGTTTaGGAGAGAAGTAAAGGTGGG +
Preference number: 4 (lower is better)
Translates to: NCGVNELDLCFKRLLTHLMLKMV*ERSKGG
Trigger: CCCACCTTTACTTCTCTCTCAAACCATTTTCAGCAT...GAGATGTGTTAGGAGGCGTTTAAAACAAAGATCCAGTTCATTTACTCCACAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378220.2
CDS CCA 90 bp AGGCGGCGGGACAAGCGCGGGCGCAGGCCCCCACGGCCCAGGCGCTaGGCAGGCCGAGGACCACCGCTCCGCGGCCTGCTGGCCATGGTG +
Preference number: 5 (lower is better)
Translates to: RRRDKRGRRPPRPRR*AGRGPPLRGLLAMV
Trigger: CACCATGGCCAGCAGGCCGCGGAGCGGTGGTCCTCGGCCTGCCCAGCGCCTGGGCCGTGGGGGCCTGCGCCCGCGCTTGTCCCGCCGCCT
80% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000486842.1
CDS CCA 90 bp AGGCGGCGGGACAAGCGCGGGCGCAGGCCCCCACGGCCCAGGCGCTaGGCAGGCCGAGGACCACCGCATGCAGAAGCAGGACCAACATCC +
Preference number: 5 (lower is better)
Translates to: RRRDKRGRRPPRPRR*AGRGPPHAEAGPTS
Trigger: GGATGTTGGTCCTGCTTCTGCATGCGGTGGTCCTCGGCCTGCCCAGCGCCTGGGCCGTGGGGGCCTGCGCCCGCGCTTGTCCCGCCGCCT
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 90 bp AGGCTCGCTCGCCCAGGAAGCGCAGGCCGTTCCGGTCCAGGTCGATaGAGACCGCCTCGCACGGGAGCTCGGCCGGCACCCGCAGGAGGC +
Preference number: 5 (lower is better)
Translates to: RLARPGSAGRSGPGR*RPPRTGARPAPAGG
Trigger: GCCTCCTGCGGGTGCCGGCCGAGCTCCCGTGCGAGGCGGTCTCCATCGACCTGGACCGGAACGGCCTGCGCTTCCTGGGCGAGCGAGCCT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000342595.2
ENST00000378220.2
ENST00000486842.1
CDS CCA 90 bp TCGGGGTCCACACAGAGGCCATCGGAGGAGCGCCCGAAGGTCACCTaGCTGAGGTCCAGGCCGGCCACGGAGCCCGGGGAGGCGCACGGC +
Preference number: 5 (lower is better)
Translates to: SGSTQRPSEERPKVT*LRSRPATEPGEAHG
Trigger: GCCGTGCGCCTCCCCGGGCTCCGTGGCCGGCCTGGACCTCAGCCAGGTGACCTTCGGGCGCTCCTCCGATGGCCTCTGTGTGGACCCCGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS TCA 90 bp GGTCCAGGCCGGCCACGGAGCCCGGGGAGGCGCACGGCACGTCGGTaGCACGTCCGGAGCCCTCCATCCAGTCCCTCAGCCACTCCAGAC +
Preference number: 5 (lower is better)
Translates to: GPGRPRSPGRRTARR*HVRSPPSSPSATPD
Trigger: GTCTGGAGTGGCTGAGGGACTGGATGGAGGGCTCCGGACGTGTCACCGACGTGCCGTGCGCCTCCCCGGGCTCCGTGGCCGGCCTGGACC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS TCA 90 bp GGTCCACACAGAGGCCATCGGAGGAGCGCCCGAAGGTCACCTGGCTaGGGTCCAGGCCGGCCACGGAGCCCGGGGAGGCGCACGGCACGT +
Preference number: 5 (lower is better)
Translates to: GPHRGHRRSARRSPG*GPGRPRSPGRRTAR
Trigger: ACGTGCCGTGCGCCTCCCCGGGCTCCGTGGCCGGCCTGGACCTCAGCCAGGTGACCTTCGGGCGCTCCTCCGATGGCCTCTGTGTGGACC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS GCA 90 bp TGGGCCACGCTGGGCAGGAGACAAGAGGCGAGGAGAAACCAGGGCTaGCGGCCCGCGCCTCCCACCCCACGGGAGGAGAGGCTGTCGGAC +
Preference number: 5 (lower is better)
Translates to: WATLGRRQEARRNQG*RPAPPTPREERLSD
Trigger: GTCCGACAGCCTCTCCTCCCGTGGGGTGGGAGGCGCGGGCCGGCAGCCCTGGTTTCTCCTCGCCTCTTGTCTCCTGCCCAGCGTGGCCCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS TCA 90 bp GGCCGCGGAAGGCGTCGGCCGGGAGCTCGGCCAGCAGGTTGTCGTTaGGCAGCAGATGCTCCAGGACGCCACAGTCCCCGAAGGCGCCAG +
Preference number: 5 (lower is better)
Translates to: GRGRRRPGARPAGCR*AADAPGRHSPRRRQ
Trigger: CTGGCGCCTTCGGGGACTGTGGCGTCCTGGAGCATCTGCTGCTCAACGACAACCTGCTGGCCGAGCTCCCGGCCGACGCCTTCCGCGGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS TCA 90 bp CCTCCACCGGGACCCTCGGGGCCAGCAGCTTGGAGAGGAGGCTGCTaGACCTGCTCACGGTGGTGGCCGCTGGTTCTGGGGACGGGCCTG +
Preference number: 5 (lower is better)
Translates to: PPPGPSGPAAWRGGC*TCSRWWPLVLGTGL
Trigger: CAGGCCCGTCCCCAGAACCAGCGGCCACCACCGTGAGCAGGTTCAGCAGCCTCCTCTCCAAGCTGCTGGCCCCGAGGGTCCCGGTGGAGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS GCA 90 bp ACAGGTTGTTGTGGCGCAGCGACAGGCGGCGCAAGGACGGCAGCGTaGCGAAGGCTCGCTCGCCCAGGAAGCGCAGGCCGTTCCGGTCCA +
Preference number: 5 (lower is better)
Translates to: TGCCGAATGGARTAA*RRLARPGSAGRSGP
Trigger: TGGACCGGAACGGCCTGCGCTTCCTGGGCGAGCGAGCCTTCGGCACGCTGCCGTCCTTGCGCCGCCTGTCGCTGCGCCACAACAACCTGT
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS TCA 90 bp CGGTGGTGGCCGCTGGTTCTGGGGACGGGCCTGGACTGGACGTGGTaGGGTTCAGCTCCTCGGGGTCCACACAGAGGCCATCGGAGGAGC +
Preference number: 5 (lower is better)
Translates to: RWWPLVLGTGLDWTW*GSAPRGPHRGHRRS
Trigger: GCTCCTCCGATGGCCTCTGTGTGGACCCCGAGGAGCTGAACCTCACCACGTCCAGTCCAGGCCCGTCCCCAGAACCAGCGGCCACCACCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS GCA 90 bp TGGAAGGCGACCCAGGCGAGCACGGTGAGGCGGTTGCCGTTGAGGTaGAGCGCGAGGAGACCCGAGAGGTTCTGGAAGGCGCCCTCCTCC +
Preference number: 5 (lower is better)
Translates to: WKATQASTVRRLPLR*SARRPERFWKAPSS
Trigger: GGAGGAGGGCGCCTTCCAGAACCTCTCGGGTCTCCTCGCGCTGCACCTCAACGGCAACCGCCTCACCGTGCTCGCCTGGGTCGCCTTCCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 90 bp GGCAGGCCCTTGAAGGCGCCGGGCGTGATGAAGGACAGGTTGTTGTaGCGCAGCGACAGGCGGCGCAAGGACGGCAGCGTGCCGAAGGCT +
Preference number: 5 (lower is better)
Translates to: GRPLKAPGVMKDRLL*RSDRRRKDGSVPKA
Trigger: AGCCTTCGGCACGCTGCCGTCCTTGCGCCGCCTGTCGCTGCGCCACAACAACCTGTCCTTCATCACGCCCGGCGCCTTCAAGGGCCTGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 90 bp GGAGAGGAGGCTGCTGAACCTGCTCACGGTGGTGGCCGCTGGTTCTaGGGACGGGCCTGGACTGGACGTGGTGAGGTTCAGCTCCTCGGG +
Preference number: 5 (lower is better)
Translates to: GEEAAEPAHGGGRWF*GRAWTGRGEVQLLG
Trigger: CCCGAGGAGCTGAACCTCACCACGTCCAGTCCAGGCCCGTCCCCAGAACCAGCGGCCACCACCGTGAGCAGGTTCAGCAGCCTCCTCTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 90 bp GCTGAACCTGCTCACGGTGGTGGCCGCTGGTTCTGGGGACGGGCCTaGACTGGACGTGGTGAGGTTCAGCTCCTCGGGGTCCACACAGAG +
Preference number: 5 (lower is better)
Translates to: AEPAHGGGRWFWGRA*TGRGEVQLLGVHTE
Trigger: CTCTGTGTGGACCCCGAGGAGCTGAACCTCACCACGTCCAGTCCAGGCCCGTCCCCAGAACCAGCGGCCACCACCGTGAGCAGGTTCAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 90 bp CAGCTTGGAGAGGAGGCTGCTGAACCTGCTCACGGTGGTGGCCGCTaGTTCTGGGGACGGGCCTGGACTGGACGTGGTGAGGTTCAGCTC +
Preference number: 5 (lower is better)
Translates to: QLGEEAAEPAHGGGR*FWGRAWTGRGEVQL
Trigger: GAGCTGAACCTCACCACGTCCAGTCCAGGCCCGTCCCCAGAACCAGCGGCCACCACCGTGAGCAGGTTCAGCAGCCTCCTCTCCAAGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 90 bp TCCCTCGGCCTTTCATCCACCCAGTGGCTTAGGACCACCCAGCCGTaGGACCCCTACCTGAGGGGAGAAAGGACAGGTCACCCAGTGCCC +
Preference number: 5 (lower is better)
Translates to: SLGLSSTQWLRTTQP*DPYLRGERTGHPVP
Trigger: GGGCACTGGGTGACCTGTCCTTTCTCCCCTCAGGTAGGGGTCCCACGGCTGGGTGGTCCTAAGCCACTGGGTGGATGAAAGGCCGAGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR CAA 90 bp AAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCTCTTAACTGCGCGTGCGTCAGGTaGGCCAGGCCGCGCAGCGCG +
Preference number: 5 (lower is better)
Translates to: KDFGVMGYPARRNGTALNCACVR*ARPRSA
Trigger: CGCGCTGCGCGGCCTGGCCAACCTGACGCACGCGCA...GTTAAGAGCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp TCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTAGCACGGTGAGGCGGTaGCCGTTGAGGTGCAGCGCG +
Preference number: 5 (lower is better)
Translates to: SLGPSLEANGSFHPPLGFSTVRR*PLRCSA
Trigger: CGCGCTGCACCTCAACGGCAACCGCCTCACCGTGCT...AAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS TCA 90 bp CTGAGGGGAGAAAGGACAGGTCACCCAGTGCCCAGGAGGGCCCCATaGGAACCCTCCCATGCCTCCACACTTCTTCCTGAATGCCCTGCC +
Preference number: 5 (lower is better)
Translates to: LRGERTGHPVPRRAP*EPSHASTLLPECPA
Trigger: GGCAGGGCATTCAGGAAGAAGTGTGGAGGCATGGGAGGGTTCTCATGGGGCCCTCCTGGGCACTGGGTGACCTGTCCTTTCTCCCCTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS CCA 90 bp CATGCAGAAGCAGGACCAACATCCCTCGGCCTTTCATCCACCCAGTaGCTTAGGACCACCCAGCCGTGGGACCCCTACCGTCCTGGGAGT +
Preference number: 5 (lower is better)
Translates to: HAEAGPTSLGLSSTQ*LRTTQPWDPYRPGS
Trigger: ACTCCCAGGACGGTAGGGGTCCCACGGCTGGGTGGTCCTAAGCCACTGGGTGGATGAAAGGCCGAGGGATGTTGGTCCTGCTTCTGCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378220.2
CDS-3UTR CAA 90 bp ATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCGAGTGGAGGCGCGGCAGGCCCTaGAAGGCGCCGGGCGTGATG +
Preference number: 5 (lower is better)
Translates to: MDARVTKAEIHTILPLEWRRGRP*KAPGVM
Trigger: CATCACGCCCGGCGCCTTCAAGGGCCTGCCGCGCCT...CCACTCGAGGGGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp GTTCTCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGAGCTCGGCCAGCAGGTaGTCGTTGAGCAGCAGATGC +
Preference number: 5 (lower is better)
Translates to: VLPGAISGGKRFLPPSTGSSASR*SLSSRC
Trigger: GCATCTGCTGCTCAACGACAACCTGCTGGCCGAGCT...CCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGAGAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 90 bp CATGCAGAAGCAGGACCAACATCCCTCGGCCTTTCATCCACCCAGTaGCTTAGGACCACCCAGCCGTGGGACCCCTACCTGAGGGGAGAA +
Preference number: 5 (lower is better)
Translates to: HAEAGPTSLGLSSTQ*LRTTQPWDPYLRGE
Trigger: TTCTCCCCTCAGGTAGGGGTCCCACGGCTGGGTGGTCCTAAGCCACTGGGTGGATGAAAGGCCGAGGGATGTTGGTCCTGCTTCTGCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR CAA 90 bp GTGGTAGAAAACAAAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGAGGCGCGGCAGGCCCTaGAAGGCGCCGGGCGTGATG +
Preference number: 5 (lower is better)
Translates to: VVENKGLRCNGLPRQEKWRRGRP*KAPGVM
Trigger: CATCACGCCCGGCGCCTTCAAGGGCCTGCCGCGCCT...CCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTTTGTTTTCTACCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp AAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCTCTTAACAGCACGGTGAGGCGGTaGCCGTTGAGGTGCAGCGCG +
Preference number: 5 (lower is better)
Translates to: KDFGVMGYPARRNGTALNSTVRR*PLRCSA
Trigger: CGCGCTGCACCTCAACGGCAACCGCCTCACCGTGCT...GTTAAGAGCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp TGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCAGCCAGCAGGTTGTCGTaGAGCAGCAGATGCTCCAGG +
Preference number: 5 (lower is better)
Translates to: WRQTVPSTLHWDFHLCPPASRLS*SSRCSR
Trigger: CCTGGAGCATCTGCTGCTCAACGACAACCTGCTGGC...TGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp CCATTCCGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAAACGCGGTCCAGCGCGTaGCCACCCAGGTTGAGCGTG +
Preference number: 5 (lower is better)
Translates to: PFRLLSPYHKHTQAQLSKTRSSA*PPRLSV
Trigger: CACGCTCAACCTGGGTGGCAACGCGCTGGACCGCGT...TTTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCGGAATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp GAAAACAAAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCGTGAGGCGGTTGCCGTaGAGGTGCAGCGCGAGGAGA +
Preference number: 5 (lower is better)
Translates to: ENKGLRCNGLPRQEKWDGVRRLP*RCSARR
Trigger: TCTCCTCGCGCTGCACCTCAACGGCAACCGCCTCAC...GCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTTTGTTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp ATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCGAGTGGGTGAGGCGGTTGCCGTaGAGGTGCAGCGCGAGGAGA +
Preference number: 5 (lower is better)
Translates to: MDARVTKAEIHTILPLEWVRRLP*RCSARR
Trigger: TCTCCTCGCGCTGCACCTCAACGGCAACCGCCTCAC...CCACTCGAGGGGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp GTTCTCCCTGGGGCCATCTCTGGAGGCAAACGGTTCCTTCCACCCTCCACTGGGTCTCTAATTCAGGCCTaGCAGGCACTGTTGCCTGGA +
Preference number: 5 (lower is better)
Translates to: VLPGAISGGKRFLPPSTGSLIQA*QALLPG
Trigger: TCCAGGCAACAGTGCCTGCAAGGCCTGAATTAGAGA...CCCAGTGGAGGGTGGAAGGAACCGTTTGCCTCCAGAGATGGCCCCAGGGAGAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp TCCAATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCGAACGCGGCGGAACAGGTaGTCGAAGGCGGCGAGTTCG +
Preference number: 5 (lower is better)
Translates to: SNGCPCDKSRNPYHPPPRTRRNR*SKAASS
Trigger: CGAACTCGCCGCCTTCGACAACCTGTTCCGCCGCGT...TCGAGGGGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCATTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp GCCAGGAGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATGCGTTGCCACCCAGGTaGAGCGTGCGCAGGCGCCGC +
Preference number: 5 (lower is better)
Translates to: ARRNGTALNYLANGSLSNALPPR*SVRRRR
Trigger: GCGGCGCCTGCGCACGCTCAACCTGGGTGGCAACGC...ATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp TTCCTTCCACCCTCCACTGGGATTTTCACCTCTGCCCTCCATTCCGGCTCCTCTTGCCCTAAAGTTCCTTaGTGGCTAGGGCCAGCCCTG +
Preference number: 5 (lower is better)
Translates to: FLPPSTGIFTSALHSGSSCPKVP*WLGPAL
Trigger: CAGGGCTGGCCCTAGCCACAAAGGAACTTTAGGGCA...AGAGGAGCCGGAATGGAGGGCAGAGGTGAAAATCCCAGTGGAGGGTGGAAGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp TTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCTCTTAACTACTTAACGCGGCGGAACAGGTaGTCGAAGGCGGCGAGTTCG +
Preference number: 5 (lower is better)
Translates to: FGVMGYPARRNGTALNYLTRRNR*SKAASS
Trigger: CGAACTCGCCGCCTTCGACAACCTGTTCCGCCGCGT...TAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp GAAAACAAAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCGCCAGCAGGTTGTCGTaGAGCAGCAGATGCTCCAGG +
Preference number: 5 (lower is better)
Translates to: ENKGLRCNGLPRQEKWDGASRLS*SSRCSR
Trigger: CCTGGAGCATCTGCTGCTCAACGACAACCTGCTGGC...GCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTTTGTTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp AGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCGCGTTGCCACCCAGGTaGAGCGTGCGCAGGCGCCGC +
Preference number: 5 (lower is better)
Translates to: RNGTALNYLANGSLSNSGALPPR*SVRRRR
Trigger: GCGGCGCCTGCGCACGCTCAACCTGGGTGGCAACGC...GCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp TCCATTCCGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAATGAAGGACAGGTTGTaGTGGCGCAGCGACAGGCGG +
Preference number: 5 (lower is better)
Translates to: SIPAPLPLPQTHSSPVKQMKDRL*WRSDRR
Trigger: CCGCCTGTCGCTGCGCCACAACAACCTGTCCTTCAT...TTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCGGAATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp AAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCTCTTAACTGCCCTAAAGTTCCTTaGTGGCTAGGGCCAGCCCTG +
Preference number: 5 (lower is better)
Translates to: KDFGVMGYPARRNGTALNCPKVP*WLGPAL
Trigger: CAGGGCTGGCCCTAGCCACAAAGGAACTTTAGGGCA...GTTAAGAGCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp TCCATTCCGGCTCCTCTCCCCTTACCACAAACACACTCAAGCCCAGTTAAGCAAGTGATGAAGGACAGGTaGTTGTGGCGCAGCGACAGG +
Preference number: 5 (lower is better)
Translates to: SIPAPLPLPQTHSSPVKQVMKDR*LWRSDR
Trigger: CCTGTCGCTGCGCCACAACAACCTGTCCTTCATCAC...TTGCTTAACTGGGCTTGAGTGTGTTTGTGGTAAGGGGAGAGGAGCCGGAATGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp AACTGTGGAGTAAATGAACTGGATCTTTGTTTTAAACGCCTCCTAACACATCTCTGCGCGTGCGTCAGGTaGGCCAGGCCGCGCAGCGCG +
Preference number: 5 (lower is better)
Translates to: NCGVNELDLCFKRLLTHLCACVR*ARPRSA
Trigger: CGCGCTGCGCGGCCTGGCCAACCTGACGCACGCGCA...GAGATGTGTTAGGAGGCGTTTAAAACAAAGATCCAGTTCATTTACTCCACAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp AGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCACGCGGTCCAGCGCGTaGCCACCCAGGTTGAGCGTG +
Preference number: 5 (lower is better)
Translates to: RNGTALNYLANGSLSNSGTRSSA*PPRLSV
Trigger: CACGCTCAACCTGGGTGGCAACGCGCTGGACCGCGT...GCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp ACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCCTTGCAGGCATGAAGGACAGGTTGTaGTGGCGCAGCGACAGGCGG +
Preference number: 5 (lower is better)
Translates to: TALNYLANGSLSNSGLAGMKDRL*WRSDRR
Trigger: CCGCCTGTCGCTGCGCCACAACAACCTGTCCTTCAT...GCCTGCAAGGCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp GAAAACAAAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGGACGGCTCTCTAATTCAGGCCTaGCAGGCACTGTTGCCTGGA +
Preference number: 5 (lower is better)
Translates to: ENKGLRCNGLPRQEKWDGSLIQA*QALLPG
Trigger: TCCAGGCAACAGTGCCTGCAAGGCCTGAATTAGAGA...GCCGTCCCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTTTGTTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 90 bp AGGAAATGGATGGAGAGGAAACCCCTGCAGAGAAGCGTTAGTGAATaGTCCTCAAATGTTGCTTACCGTCCTGGGAGTCTCCCTGGTCCT +
Preference number: 5 (lower is better)
Translates to: RKWMERKPLQRSVSE*SSNVAYRPGSLPGP
Trigger: AGGACCAGGGAGACTCCCAGGACGGTAAGCAACATTTGAGGACCATTCACTAACGCTTCTCTGCAGGGGTTTCCTCTCCATCCATTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS CCA 90 bp CCTGACAGCAACTCAGATGGCATCACTGACAACCCAGCAAGGAAATaGATGGAGAGGAAACCCCTGCAGAGAAGCGTTAGTGAATGGTCC +
Preference number: 5 (lower is better)
Translates to: PDSNSDGITDNPARK*MERKPLQRSVSEWS
Trigger: GGACCATTCACTAACGCTTCTCTGCAGGGGTTTCCTCTCCATCCATTTCCTTGCTGGGTTGTCAGTGATGCCATCTGAGTTGCTGTCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR CAA 90 bp ATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCGAGTGGGGCCCACGTTCATTCTaGCTTCTCTTTTCCAATGGA +
Preference number: 5 (lower is better)
Translates to: MDARVTKAEIHTILPLEWGPRSF*LLFSNG
Trigger: TCCATTGGAAAAGAGAAGCAAGAATGAACGTGGGCC...CCACTCGAGGGGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 90 bp ACAGCAACTCAGATGGCATCACTGACAACCCAGCAAGGAAATGGATaGAGAGGAAACCCCTGCAGAGAAGCGTTAGTGAATGGTCCTCAA +
Preference number: 5 (lower is better)
Translates to: TATQMASLTTQQGNG*RGNPCREALVNGPQ
Trigger: TTGAGGACCATTCACTAACGCTTCTCTGCAGGGGTTTCCTCTCCATCCATTTCCTTGCTGGGTTGTCAGTGATGCCATCTGAGTTGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR CAA 90 bp GCCAGGAGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATAATGGTCCTCAAATGTaGCTTACCGTCCTGGGAGTC +
Preference number: 5 (lower is better)
Translates to: ARRNGTALNYLANGSLSNNGPQM*LTVLGV
Trigger: GACTCCCAGGACGGTAAGCAACATTTGAGGACCATT...ATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR CAA 90 bp AACTGTGGAGTAAATGAACTGGATCTTTGTTTTAAACGCCTCCTAACACATCTCAGCTCGGCCAGCAGGTaGTCGTTGAGCAGCAGATGC +
Preference number: 5 (lower is better)
Translates to: NCGVNELDLCFKRLLTHLSSASR*SLSSRC
Trigger: GCATCTGCTGCTCAACGACAACCTGCTGGCCGAGCT...GAGATGTGTTAGGAGGCGTTTAAAACAAAGATCCAGTTCATTTACTCCACAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp ACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATTCAGGCCTTGCAGGCGGCCCACGTTCATTCTaGCTTCTCTTTTCCAATGGA +
Preference number: 5 (lower is better)
Translates to: TALNYLANGSLSNSGLAGGPRSF*LLFSNG
Trigger: TCCATTGGAAAAGAGAAGCAAGAATGAACGTGGGCC...GCCTGCAAGGCCTGAATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp ATGGATGCCCGTGTGACAAAAGCAGAAATCCATACCATCCTCCCCCTCGAGTGGACTTTACAAATTTATTaGTCCACAAACACACCCCCT +
Preference number: 5 (lower is better)
Translates to: MDARVTKAEIHTILPLEWTLQIY*STNTPP
Trigger: AGGGGGTGTGTTTGTGGACAAATAAATTTGTAAAGT...CCACTCGAGGGGGAGGATGGTATGGATTTCTGCTTTTGTCACACGGGCATCCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS-3UTR CAA 90 bp GCCAGGAGAAATGGGACGGCTCTTAACTACTTAGCCAATGGAAGTCTCTCTAATCCACAAATGGACAGTTaGGATCTATTAGGAAACCCT +
Preference number: 5 (lower is better)
Translates to: ARRNGTALNYLANGSLSNPQMDS*DLLGNP
Trigger: AGGGTTTCCTAATAGATCCAAACTGTCCATTTGTGG...ATTAGAGAGACTTCCATTGGCTAAGTAGTTAAGAGCCGTCCCATTTCTCCTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS-3UTR CAA 90 bp GTGGTAGAAAACAAAGGACTTCGGTGTAATGGGTTACCCCGCCAGGAGAAATGGACTTTACAAATTTATTaGTCCACAAACACACCCCCT +
Preference number: 5 (lower is better)
Translates to: VVENKGLRCNGLPRQEKWTLQIY*STNTPP
Trigger: AGGGGGTGTGTTTGTGGACAAATAAATTTGTAAAGT...CCATTTCTCCTGGCGGGGTAACCCATTACACCGAAGTCCTTTGTTTTCTACCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS GCA 72 bp GGTCGCAGCGCACCGAGCAGCCGCGCTCCACGGTGCTaGAGGCGCAGGCGGCGGGACAAGCGCGGGCGCAGG +
Preference number: 6 (lower is better)
Translates to: GRSAPSSRAPRC*RRRRRDKRGRR
Trigger: CCTGCGCCCGCGCTTGTCCCGCCGCCTGCGCCTGCAGCACCGTGGAGCGCGGCTGCTCGGTGCGCTGCGACC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000342595.2
ENST00000378220.2
ENST00000486842.1
CDS TCA 72 bp GGCGGCAGGCTGCTAGGTCTAGGCGGCGCAGGCGGCTaGGCGCCGCGAAGGTGCGCGCGTGCAGGTAGCGCA +
Preference number: 6 (lower is better)
Translates to: GGRLLGLGGAGG*APRRCARAGSA
Trigger: TGCGCTACCTGCACGCGCGCACCTTCGCGGCGCTCAGCCGCCTGCGCCGCCTAGACCTAGCAGCCTGCCGCC
75% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS TCA 72 bp AGAGGCCATCGGAGGAGCGCCCGAAGGTCACCTGGCTaGGGTCCAGGCCGGCCACGGAGCCCGGGGAGGCGC +
Preference number: 6 (lower is better)
Translates to: RGHRRSARRSPG*GPGRPRSPGRR
Trigger: GCGCCTCCCCGGGCTCCGTGGCCGGCCTGGACCTCAGCCAGGTGACCTTCGGGCGCTCCTCCGATGGCCTCT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS GCA 72 bp GCAGGCCCTGCAGCGAGCTGGAGGCCACCGCCTCGATaGGGCCGCGCTCCAGGTGCGCGTGCGTCAGGTTGG +
Preference number: 6 (lower is better)
Translates to: AGPAASWRPPPR*GRAPGARASGW
Trigger: CCAACCTGACGCACGCGCACCTGGAGCGCGGCCGCATCGAGGCGGTGGCCTCCAGCTCGCTGCAGGGCCTGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 72 bp GACAAGCGCGGGCGCAGGCCCCCACGGCCCAGGCGCTaGGCAGGCCGAGGACCACCGCATGCAGAAGCAGGA +
Preference number: 6 (lower is better)
Translates to: DKRGRRPPRPRR*AGRGPPHAEAG
Trigger: TCCTGCTTCTGCATGCGGTGGTCCTCGGCCTGCCCAGCGCCTGGGCCGTGGGGGCCTGCGCCCGCGCTTGTC
75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 72 bp CGCCCAGGAAGCGCAGGCCGTTCCGGTCCAGGTCGATaGAGACCGCCTCGCACGGGAGCTCGGCCGGCACCC +
Preference number: 6 (lower is better)
Translates to: RPGSAGRSGPGR*RPPRTGARPAP
Trigger: GGGTGCCGGCCGAGCTCCCGTGCGAGGCGGTCTCCATCGACCTGGACCGGAACGGCCTGCGCTTCCTGGGCG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000342595.2
ENST00000378220.2
ENST00000486842.1
CDS TCA 72 bp GGGCCGGCAGTTCGGCCAGGAGGCGCTCGGGCACGCTaGAGAGGCGGCAGGCTGCTAGGTCTAGGCGGCGCA +
Preference number: 6 (lower is better)
Translates to: GPAVRPGGARAR*RGGRLLGLGGA
Trigger: TGCGCCGCCTAGACCTAGCAGCCTGCCGCCTCTTCAGCGTGCCCGAGCGCCTCCTGGCCGAACTGCCGGCCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS GCA 72 bp TGTGGCGCAGCGACAGGCGGCGCAAGGACGGCAGCGTaGCGAAGGCTCGCTCGCCCAGGAAGCGCAGGCCGT +
Preference number: 6 (lower is better)
Translates to: CGAATGGARTAA*RRLARPGSAGR
Trigger: ACGGCCTGCGCTTCCTGGGCGAGCGAGCCTTCGGCACGCTGCCGTCCTTGCGCCGCCTGTCGCTGCGCCACA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS GCA 72 bp TGCTCCAGGACGCCACAGTCCCCGAAGGCGCCAGCGTaGACGGCACGGACGCGGTTGGCCTGCAGGCTGAGC +
Preference number: 6 (lower is better)
Translates to: CSRTPQSPKAPA*TARTRLACRLS
Trigger: GCTCAGCCTGCAGGCCAACCGCGTCCGTGCCGTGCACGCTGGCGCCTTCGGGGACTGTGGCGTCCTGGAGCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 72 bp ACACAGAGGCCATCGGAGGAGCGCCCGAAGGTCACCTaGCTGAGGTCCAGGCCGGCCACGGAGCCCGGGGAG +
Preference number: 6 (lower is better)
Translates to: TQRPSEERPKVT*LRSRPATEPGE
Trigger: CTCCCCGGGCTCCGTGGCCGGCCTGGACCTCAGCCAGGTGACCTTCGGGCGCTCCTCCGATGGCCTCTGTGT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CAA 90 bp AGGCGCGGCAGGCCCTTGAAGGCGCCGGGCGTGATGAAGGACAGGTaGTTGTGGCGCAGCGACAGGCGGCGCAAGGACGGCAGCGTGCCG +
Preference number: 6 (lower is better)
Translates to: RRGRPLKAPGVMKDR*LWRSDRRRKDGSVP
Trigger: CGGCACGCTGCCGTCCTTGCGCCGCCTGTCGCTGCGCCACAACAACCTGTCCTTCATCACGCCCGGCGCCTTCAAGGGCCTGCCGCGCCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CAA 90 bp CGCCGCAGGCCGCGGAAGGCGTCGGCCGGGAGCTCGGCCAGCAGGTaGTCGTTGAGCAGCAGATGCTCCAGGACGCCACAGTCCCCGAAG +
Preference number: 6 (lower is better)
Translates to: RRRPRKASAGSSASR*SLSSRCSRTPQSPK
Trigger: CTTCGGGGACTGTGGCGTCCTGGAGCATCTGCTGCTCAACGACAACCTGCTGGCCGAGCTCCCGGCCGACGCCTTCCGCGGCCTGCGGCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CAA 72 bp GGCTGGAAGGCGACCCAGGCGAGCACGGTGAGGCGGTaGCCGTTGAGGTGCAGCGCGAGGAGACCCGAGAGG +
Preference number: 6 (lower is better)
Translates to: GWKATQASTVRR*PLRCSARRPER
Trigger: CCTCTCGGGTCTCCTCGCGCTGCACCTCAACGGCAACCGCCTCACCGTGCTCGCCTGGGTCGCCTTCCAGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CAA 90 bp CGCGGCAGGCCCTTGAAGGCGCCGGGCGTGATGAAGGACAGGTTGTaGTGGCGCAGCGACAGGCGGCGCAAGGACGGCAGCGTGCCGAAG +
Preference number: 6 (lower is better)
Translates to: RGRPLKAPGVMKDRL*WRSDRRRKDGSVPK
Trigger: CTTCGGCACGCTGCCGTCCTTGCGCCGCCTGTCGCTGCGCCACAACAACCTGTCCTTCATCACGCCCGGCGCCTTCAAGGGCCTGCCGCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CAA 90 bp AGGCCGCGGAAGGCGTCGGCCGGGAGCTCGGCCAGCAGGTTGTCGTaGAGCAGCAGATGCTCCAGGACGCCACAGTCCCCGAAGGCGCCA +
Preference number: 6 (lower is better)
Translates to: RPRKASAGSSASRLS*SSRCSRTPQSPKAP
Trigger: TGGCGCCTTCGGGGACTGTGGCGTCCTGGAGCATCTGCTGCTCAACGACAACCTGCTGGCCGAGCTCCCGGCCGACGCCTTCCGCGGCCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS TCA 72 bp GGACCCTCGGGGCCAGCAGCTTGGAGAGGAGGCTGCTaGACCTGCTCACGGTGGTGGCCGCTGGTTCTGGGG +
Preference number: 6 (lower is better)
Translates to: GPSGPAAWRGGC*TCSRWWPLVLG
Trigger: CCCCAGAACCAGCGGCCACCACCGTGAGCAGGTTCAGCAGCCTCCTCTCCAAGCTGCTGGCCCCGAGGGTCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 72 bp GCTCACGGTGGTGGCCGCTGGTTCTGGGGACGGGCCTaGACTGGACGTGGTGAGGTTCAGCTCCTCGGGGTC +
Preference number: 6 (lower is better)
Translates to: AHGGGRWFWGRA*TGRGEVQLLGV
Trigger: GACCCCGAGGAGCTGAACCTCACCACGTCCAGTCCAGGCCCGTCCCCAGAACCAGCGGCCACCACCGTGAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CAA 72 bp CCGCGGAAGGCGTCGGCCGGGAGCTCGGCCAGCAGGTaGTCGTTGAGCAGCAGATGCTCCAGGACGCCACAG +
Preference number: 6 (lower is better)
Translates to: PRKASAGSSASR*SLSSRCSRTPQ
Trigger: CTGTGGCGTCCTGGAGCATCTGCTGCTCAACGACAACCTGCTGGCCGAGCTCCCGGCCGACGCCTTCCGCGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS TCA 72 bp AGGCGTCGGCCGGGAGCTCGGCCAGCAGGTTGTCGTTaGGCAGCAGATGCTCCAGGACGCCACAGTCCCCGA +
Preference number: 6 (lower is better)
Translates to: RRRPGARPAGCR*AADAPGRHSPR
Trigger: TCGGGGACTGTGGCGTCCTGGAGCATCTGCTGCTCAACGACAACCTGCTGGCCGAGCTCCCGGCCGACGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS GCA 72 bp ACCCAGGCGAGCACGGTGAGGCGGTTGCCGTTGAGGTaGAGCGCGAGGAGACCCGAGAGGTTCTGGAAGGCG +
Preference number: 6 (lower is better)
Translates to: TQASTVRRLPLR*SARRPERFWKA
Trigger: CGCCTTCCAGAACCTCTCGGGTCTCCTCGCGCTGCACCTCAACGGCAACCGCCTCACCGTGCTCGCCTGGGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 72 bp GAGGAGGCTGCTGAACCTGCTCACGGTGGTGGCCGCTaGTTCTGGGGACGGGCCTGGACTGGACGTGGTGAG +
Preference number: 6 (lower is better)
Translates to: EEAAEPAHGGGR*FWGRAWTGRGE
Trigger: CTCACCACGTCCAGTCCAGGCCCGTCCCCAGAACCAGCGGCCACCACCGTGAGCAGGTTCAGCAGCCTCCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CAA 72 bp CCCTTGAAGGCGCCGGGCGTGATGAAGGACAGGTTGTaGTGGCGCAGCGACAGGCGGCGCAAGGACGGCAGC +
Preference number: 6 (lower is better)
Translates to: PLKAPGVMKDRL*WRSDRRRKDGS
Trigger: GCTGCCGTCCTTGCGCCGCCTGTCGCTGCGCCACAACAACCTGTCCTTCATCACGCCCGGCGCCTTCAAGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CAA 72 bp AGGCCCTTGAAGGCGCCGGGCGTGATGAAGGACAGGTaGTTGTGGCGCAGCGACAGGCGGCGCAAGGACGGC +
Preference number: 6 (lower is better)
Translates to: RPLKAPGVMKDR*LWRSDRRRKDG
Trigger: GCCGTCCTTGCGCCGCCTGTCGCTGCGCCACAACAACCTGTCCTTCATCACGCCCGGCGCCTTCAAGGGCCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CAA 72 bp AAGGCGTCGGCCGGGAGCTCGGCCAGCAGGTTGTCGTaGAGCAGCAGATGCTCCAGGACGCCACAGTCCCCG +
Preference number: 6 (lower is better)
Translates to: KASAGSSASRLS*SSRCSRTPQSP
Trigger: CGGGGACTGTGGCGTCCTGGAGCATCTGCTGCTCAACGACAACCTGCTGGCCGAGCTCCCGGCCGACGCCTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS TCA 72 bp CCGCTGGTTCTGGGGACGGGCCTGGACTGGACGTGGTaGGGTTCAGCTCCTCGGGGTCCACACAGAGGCCAT +
Preference number: 6 (lower is better)
Translates to: PLVLGTGLDWTW*GSAPRGPHRGH
Trigger: ATGGCCTCTGTGTGGACCCCGAGGAGCTGAACCTCACCACGTCCAGTCCAGGCCCGTCCCCAGAACCAGCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 72 bp TTGAAGGCGCCGGGCGTGATGAAGGACAGGTTGTTGTaGCGCAGCGACAGGCGGCGCAAGGACGGCAGCGTG +
Preference number: 6 (lower is better)
Translates to: LKAPGVMKDRLL*RSDRRRKDGSV
Trigger: CACGCTGCCGTCCTTGCGCCGCCTGTCGCTGCGCCACAACAACCTGTCCTTCATCACGCCCGGCGCCTTCAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 72 bp GCTGCTGAACCTGCTCACGGTGGTGGCCGCTGGTTCTaGGGACGGGCCTGGACTGGACGTGGTGAGGTTCAG +
Preference number: 6 (lower is better)
Translates to: AAEPAHGGGRWF*GRAWTGRGEVQ
Trigger: CTGAACCTCACCACGTCCAGTCCAGGCCCGTCCCCAGAACCAGCGGCCACCACCGTGAGCAGGTTCAGCAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CAA 90 bp ATCCAGTCCCTCAGCCACTCCAGACGGCAGTCGCAGCACCACGGGTaGCGGAAGAGGAAGAGGCGGCCCAGGAAGAAGCCGGGCTGGAAG +
Preference number: 6 (lower is better)
Translates to: IQSLSHSRRQSQHHG*RKRKRRPRKKPGWK
Trigger: CTTCCAGCCCGGCTTCTTCCTGGGCCGCCTCTTCCTCTTCCGCAACCCGTGGTGCTGCGACTGCCGTCTGGAGTGGCTGAGGGACTGGAT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342595.2
ENST00000378220.2
CDS CCA 72 bp GCAGGACCAACATCCCTCGGCCTTTCATCCACCCAGTaGCTTAGGACCACCCAGCCGTGGGACCCCTACCGT +
Preference number: 6 (lower is better)
Translates to: AGPTSLGLSSTQ*LRTTQPWDPYR
Trigger: ACGGTAGGGGTCCCACGGCTGGGTGGTCCTAAGCCACTGGGTGGATGAAAGGCCGAGGGATGTTGGTCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378220.2
CDS CCA 72 bp CTTTCATCCACCCAGTGGCTTAGGACCACCCAGCCGTaGGACCCCTACCTGAGGGGAGAAAGGACAGGTCAC +
Preference number: 6 (lower is better)
Translates to: LSSTQWLRTTQP*DPYLRGERTGH
Trigger: GTGACCTGTCCTTTCTCCCCTCAGGTAGGGGTCCCACGGCTGGGTGGTCCTAAGCCACTGGGTGGATGAAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS TCA 72 bp GAAAGGACAGGTCACCCAGTGCCCAGGAGGGCCCCATaGGAACCCTCCCATGCCTCCACACTTCTTCCTGAA +
Preference number: 6 (lower is better)
Translates to: ERTGHPVPRRAP*EPSHASTLLPE
Trigger: TTCAGGAAGAAGTGTGGAGGCATGGGAGGGTTCTCATGGGGCCCTCCTGGGCACTGGGTGACCTGTCCTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS CAA 72 bp CCCTGCAGAGAAGCGTTAGTGAATGGTCCTCAAATGTaGCTTACCGTCCTGGGAGTCTCCCTGGTCCTGCTC +
Preference number: 6 (lower is better)
Translates to: PCREALVNGPQM*LTVLGVSLVLL
Trigger: GAGCAGGACCAGGGAGACTCCCAGGACGGTAAGCAACATTTGAGGACCATTCACTAACGCTTCTCTGCAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS TCA 72 bp GCCCATCCATCTCCCAAGTCAGGCAGCCACAGATGCTaGAAATGGTTTGAGAGAGAAGTAAAGGTGGGGGTG +
Preference number: 6 (lower is better)
Translates to: AHPSPKSGSHRC*KWFEREVKVGV
Trigger: CACCCCCACCTTTACTTCTCTCTCAAACCATTTTCAGCATCTGTGGCTGCCTGACTTGGGAGATGGATGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378220.2
CDS CCA 72 bp ATGGAGAGGAAACCCCTGCAGAGAAGCGTTAGTGAATaGTCCTCAAATGTTGCTTACCGTCCTGGGAGTCTC +
Preference number: 6 (lower is better)
Translates to: MERKPLQRSVSE*SSNVAYRPGSL
Trigger: GAGACTCCCAGGACGGTAAGCAACATTTGAGGACCATTCACTAACGCTTCTCTGCAGGGGTTTCCTCTCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS CCA 72 bp CAGATGGCATCACTGACAACCCAGCAAGGAAATGGATaGAGAGGAAACCCCTGCAGAGAAGCGTTAGTGAAT +
Preference number: 6 (lower is better)
Translates to: QMASLTTQQGNG*RGNPCREALVN
Trigger: ATTCACTAACGCTTCTCTGCAGGGGTTTCCTCTCCATCCATTTCCTTGCTGGGTTGTCAGTGATGCCATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS CCA 72 bp AACTCAGATGGCATCACTGACAACCCAGCAAGGAAATaGATGGAGAGGAAACCCCTGCAGAGAAGCGTTAGT +
Preference number: 6 (lower is better)
Translates to: NSDGITDNPARK*MERKPLQRSVS
Trigger: ACTAACGCTTCTCTGCAGGGGTTTCCTCTCCATCCATTTCCTTGCTGGGTTGTCAGTGATGCCATCTGAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS CAA 90 bp AGAAGCTCCCCACAAATGGACAGTTTGGATCTATTAGGAAACCCTTaGTCAGGCTACAGCCCTGACAGCAACTCAGATGGCATCACTGAC +
Preference number: 6 (lower is better)
Translates to: RSSPQMDSLDLLGNP*SGYSPDSNSDGITD
Trigger: GTCAGTGATGCCATCTGAGTTGCTGTCAGGGCTGTAGCCTGACAAAGGGTTTCCTAATAGATCCAAACTGTCCATTTGTGGGGAGCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342595.2
CDS CAA 72 bp CAACAGAAAATCAGAAGCTCCCCACAAATGGACAGTTaGGATCTATTAGGAAACCCTTTGTCAGGCTACAGC +
Preference number: 6 (lower is better)
Translates to: QQKIRSSPQMDS*DLLGNPLSGYS
Trigger: GCTGTAGCCTGACAAAGGGTTTCCTAATAGATCCAAACTGTCCATTTGTGGGGAGCTTCTGATTTTCTGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000342595.2